{"id":58261,"name":"genome-annotation","description":null,"url":"https://github.com/timrozday-mgnify/genome-annotation","last_synced_at":"2025-09-05T15:07:26.633Z","repository":{"id":306898742,"uuid":"1027596940","full_name":"timrozday-mgnify/genome-annotation","owner":"timrozday-mgnify","description":null,"archived":false,"fork":false,"pushed_at":"2025-07-28T10:29:08.000Z","size":245,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-07-28T10:31:40.765Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/timrozday-mgnify.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-07-28T08:48:57.000Z","updated_at":"2025-07-28T10:29:11.000Z","dependencies_parsed_at":"2025-07-28T10:41:49.932Z","dependency_job_id":null,"html_url":"https://github.com/timrozday-mgnify/genome-annotation","commit_stats":null,"previous_names":["timrozday-mgnify/genome-annotation"],"tags_count":null,"template":false,"template_full_name":null,"purl":"pkg:github/timrozday-mgnify/genome-annotation","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timrozday-mgnify%2Fgenome-annotation","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timrozday-mgnify%2Fgenome-annotation/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timrozday-mgnify%2Fgenome-annotation/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timrozday-mgnify%2Fgenome-annotation/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/timrozday-mgnify","download_url":"https://codeload.github.com/timrozday-mgnify/genome-annotation/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timrozday-mgnify%2Fgenome-annotation/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273774871,"owners_count":25165740,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"timrozday-mgnify","name":"Tim Rozday","uuid":"196912094","kind":"user","description":"Senior MGnify Bioinformatician","email":"","website":null,"location":null,"twitter":null,"company":"EMBL-EBI","icon_url":"https://avatars.githubusercontent.com/u/196912094?v=4","repositories_count":1,"last_synced_at":"2025-02-21T21:25:57.425Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/timrozday-mgnify","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2025-02-21T21:25:57.447Z","updated_at":"2025-02-21T21:25:57.447Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/timrozday-mgnify","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/timrozday-mgnify/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"timrozday-mgnify/genome-annotation","html_url":"https://github.com/timrozday-mgnify/genome-annotation","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T15:06:41.927Z","updated_at":"2025-09-05T15:06:41.927Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/timrozday-mgnify%2Fgenome-annotation","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/timrozday-mgnify%2Fgenome-annotation/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10102346,"issues_count":31523475,"pull_requests_count":97727319,"authors_count":10703653,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"PushEvent":8,"CreateEvent":2},"last_year":{"PushEvent":8,"CreateEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/actions/get-shards/action.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:45.369Z","updated_at":"2025-07-28T10:41:45.369Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/actions/get-shards/action.yml","dependencies":[{"id":24378472306,"package_name":"nf-core/setup-nf-test","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/actions/nf-test/action.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:45.486Z","updated_at":"2025-07-28T10:41:45.486Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/actions/nf-test/action.yml","dependencies":[{"id":24378473595,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":24378473610,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"a26af69be951a213d495a4c3e4e4022e16d87065","direct":true,"kind":"composite","optional":false},{"id":24378473611,"package_name":"nf-core/setup-nf-test","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":24378473612,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":24378473665,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"505e6394dae86d6a5c7fbb6e3fb8938e3e863830","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:45.658Z","updated_at":"2025-07-28T10:41:45.658Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/awsfulltest.yml","dependencies":[{"id":24378473979,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":24378474099,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"ea165f8d65b6e75b540449e92b4886f43607fa02","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:45.834Z","updated_at":"2025-07-28T10:41:45.834Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/awstest.yml","dependencies":[{"id":24378474153,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":24378474156,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"ea165f8d65b6e75b540449e92b4886f43607fa02","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:46.103Z","updated_at":"2025-07-28T10:41:46.103Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/branch.yml","dependencies":[{"id":24378474382,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:46.589Z","updated_at":"2025-07-28T10:41:46.589Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":24378474551,"package_name":"actions/stale","ecosystem":"actions","requirements":"5bef64f19d7facfb25b37b414482c7164d639639","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:46.643Z","updated_at":"2025-07-28T10:41:46.643Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/download_pipeline.yml","dependencies":[{"id":24378474603,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":24378474604,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":24378474605,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"a26af69be951a213d495a4c3e4e4022e16d87065","direct":true,"kind":"composite","optional":false},{"id":24378474606,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"4bb22c52d4f63406c49e94c804632975787312b3","direct":true,"kind":"composite","optional":false},{"id":24378474607,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"ea165f8d65b6e75b540449e92b4886f43607fa02","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix_linting.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:46.698Z","updated_at":"2025-07-28T10:41:46.698Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/fix_linting.yml","dependencies":[{"id":24378474627,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":24378474628,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":24378474629,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"a26af69be951a213d495a4c3e4e4022e16d87065","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:46.807Z","updated_at":"2025-07-28T10:41:46.807Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/linting.yml","dependencies":[{"id":24378474650,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":24378474651,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"a26af69be951a213d495a4c3e4e4022e16d87065","direct":true,"kind":"composite","optional":false},{"id":24378474652,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":24378474653,"package_name":"pietrobolcato/action-read-yaml","ecosystem":"actions","requirements":"9f13718d61111b69f30ab4ac683e67a56d254e1d","direct":true,"kind":"composite","optional":false},{"id":24378474654,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"ea165f8d65b6e75b540449e92b4886f43607fa02","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:46.872Z","updated_at":"2025-07-28T10:41:46.872Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":24378474876,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"ac66b43f0e6a346234dd65d4d0c8fbb31cb316e5","direct":true,"kind":"composite","optional":false},{"id":24378474877,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"52423e01640425a022ef5fd42c6fb5f633a02728","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/nf-test.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:47.358Z","updated_at":"2025-07-28T10:41:47.358Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/nf-test.yml","dependencies":[{"id":24378474902,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":24378474903,"package_name":"./.github/actions/get-shards","ecosystem":"actions","requirements":"*","direct":true,"kind":"composite","optional":false},{"id":24378474904,"package_name":"./.github/actions/nf-test","ecosystem":"actions","requirements":"*","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:47.455Z","updated_at":"2025-07-28T10:41:47.455Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/release-announcements.yml","dependencies":[{"id":24378474947,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":24378474974,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"6461056ea355ea43b977e149f7bf76aaa572e5e8","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/template-version-comment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:47.667Z","updated_at":"2025-07-28T10:41:47.667Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/.github/workflows/template-version-comment.yml","dependencies":[{"id":24378475023,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":24378475024,"package_name":"nichmor/minimal-read-yaml","ecosystem":"actions","requirements":"1f7205277e25e156e1f63815781db80a6d490b8f","direct":true,"kind":"composite","optional":false},{"id":24378475071,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/local/chunkfastx/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.400Z","updated_at":"2025-07-28T10:41:48.400Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/local/chunkfastx/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/local/concatenate/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.443Z","updated_at":"2025-07-28T10:41:48.443Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/local/concatenate/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/local/fetchunzip/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.486Z","updated_at":"2025-07-28T10:41:48.486Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/local/fetchunzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.529Z","updated_at":"2025-07-28T10:41:48.529Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hmmer/hmmsearch/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.572Z","updated_at":"2025-07-28T10:41:48.572Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/hmmer/hmmsearch/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.615Z","updated_at":"2025-07-28T10:41:48.615Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/pyrodigal/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.658Z","updated_at":"2025-07-28T10:41:48.658Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/pyrodigal/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/local/fetchdb/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.701Z","updated_at":"2025-07-28T10:41:48.701Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/subworkflows/local/fetchdb/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.744Z","updated_at":"2025-07-28T10:41:48.744Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.787Z","updated_at":"2025-07-28T10:41:48.787Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.829Z","updated_at":"2025-07-28T10:41:48.829Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/chunkfastx/environment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.873Z","updated_at":"2025-07-28T10:41:48.873Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/local/chunkfastx/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/concatenate/environment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:48.917Z","updated_at":"2025-07-28T10:41:48.917Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/local/concatenate/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/fetchunzip/environment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:49.172Z","updated_at":"2025-07-28T10:41:49.172Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/local/fetchunzip/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:49.215Z","updated_at":"2025-07-28T10:41:49.215Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/hmmer/hmmsearch/environment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:49.258Z","updated_at":"2025-07-28T10:41:49.258Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/hmmer/hmmsearch/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:49.301Z","updated_at":"2025-07-28T10:41:49.301Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/multiqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/pyrodigal/environment.yml","sha":null,"kind":"manifest","created_at":"2025-07-28T10:41:49.344Z","updated_at":"2025-07-28T10:41:49.344Z","repository_link":"https://github.com/timrozday-mgnify/genome-annotation/blob/master/modules/nf-core/pyrodigal/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:34.764Z","updated_at":"2025-10-07T08:22:56.353Z","avatar_url":"https://github.com/timrozday-mgnify.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/58261","html_url":"https://science.ecosyste.ms/projects/58261","bibtex_url":"https://science.ecosyste.ms/projects/58261/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/58261/export.apalike"}