{"id":58507,"name":"cutandtag","description":null,"url":"https://github.com/typekey/cutandtag","last_synced_at":"2025-09-05T15:11:52.837Z","repository":{"id":262908128,"uuid":"828316922","full_name":"typekey/cutandtag","owner":"typekey","description":null,"archived":false,"fork":false,"pushed_at":"2024-11-14T23:45:16.000Z","size":3697,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-11-15T00:28:59.704Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/typekey.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-07-13T19:01:08.000Z","updated_at":"2024-11-14T23:40:49.000Z","dependencies_parsed_at":"2024-11-15T00:39:10.376Z","dependency_job_id":null,"html_url":"https://github.com/typekey/cutandtag","commit_stats":null,"previous_names":["typekey/cutandtag"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/typekey/cutandtag","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/typekey%2Fcutandtag","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/typekey%2Fcutandtag/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/typekey%2Fcutandtag/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/typekey%2Fcutandtag/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/typekey","download_url":"https://codeload.github.com/typekey/cutandtag/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/typekey%2Fcutandtag/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273775031,"owners_count":25165741,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"typekey","name":"Lei Zheng","uuid":"34068158","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/34068158?u=e986cd4323cbfe71874b5d16ae48ca844fc853cf\u0026v=4","repositories_count":1,"last_synced_at":"2023-09-17T01:30:28.588Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/typekey","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-06-10T01:04:52.334Z","updated_at":"2023-09-17T01:30:28.717Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/typekey","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/typekey/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"typekey/cutandtag","html_url":"https://github.com/typekey/cutandtag","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T15:11:21.118Z","updated_at":"2025-09-05T15:11:21.118Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/typekey%2Fcutandtag","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/typekey%2Fcutandtag/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10102346,"issues_count":31523475,"pull_requests_count":97727319,"authors_count":10703653,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"PublicEvent":1,"PushEvent":2,"CreateEvent":1},"last_year":{"WatchEvent":1,"PublicEvent":1,"PushEvent":2,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cpan","filepath":"modules/local/for_patch/bedtools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.181Z","updated_at":"2024-11-15T00:39:08.181Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/local/for_patch/bedtools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/local/for_patch/samtools/view/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.225Z","updated_at":"2024-11-15T00:39:08.225Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/local/for_patch/samtools/view/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/bamtobed/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.485Z","updated_at":"2024-11-15T00:39:08.485Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/bedtools/bamtobed/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/complement/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.541Z","updated_at":"2024-11-15T00:39:08.541Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/bedtools/complement/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/genomecov/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.587Z","updated_at":"2024-11-15T00:39:08.587Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/bedtools/genomecov/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/intersect/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.629Z","updated_at":"2024-11-15T00:39:08.629Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/bedtools/intersect/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.675Z","updated_at":"2024-11-15T00:39:08.675Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/bedtools/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bowtie2/align/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.722Z","updated_at":"2024-11-15T00:39:08.722Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/bowtie2/align/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bowtie2/build/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.766Z","updated_at":"2024-11-15T00:39:08.766Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/bowtie2/build/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/cat/fastq/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.813Z","updated_at":"2024-11-15T00:39:08.813Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/cat/fastq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/getchromsizes/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.856Z","updated_at":"2024-11-15T00:39:08.856Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/custom/getchromsizes/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeptools/computematrix/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.900Z","updated_at":"2024-11-15T00:39:08.900Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/deeptools/computematrix/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeptools/multibamsummary/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.947Z","updated_at":"2024-11-15T00:39:08.947Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/deeptools/multibamsummary/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeptools/plotcorrelation/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:08.995Z","updated_at":"2024-11-15T00:39:08.995Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/deeptools/plotcorrelation/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeptools/plotfingerprint/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.043Z","updated_at":"2024-11-15T00:39:09.043Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/deeptools/plotfingerprint/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeptools/plotheatmap/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.093Z","updated_at":"2024-11-15T00:39:09.093Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/deeptools/plotheatmap/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeptools/plotpca/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.173Z","updated_at":"2024-11-15T00:39:09.173Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/deeptools/plotpca/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.218Z","updated_at":"2024-11-15T00:39:09.218Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gunzip/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.261Z","updated_at":"2024-11-15T00:39:09.261Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/gunzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/macs2/callpeak/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.302Z","updated_at":"2024-11-15T00:39:09.302Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/macs2/callpeak/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/picard/markduplicates/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.348Z","updated_at":"2024-11-15T00:39:09.348Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/picard/markduplicates/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/preseq/lcextrap/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.395Z","updated_at":"2024-11-15T00:39:09.395Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/preseq/lcextrap/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/faidx/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.438Z","updated_at":"2024-11-15T00:39:09.438Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/samtools/faidx/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/flagstat/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.481Z","updated_at":"2024-11-15T00:39:09.481Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/samtools/flagstat/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/idxstats/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.525Z","updated_at":"2024-11-15T00:39:09.525Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/samtools/idxstats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.569Z","updated_at":"2024-11-15T00:39:09.569Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/samtools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.616Z","updated_at":"2024-11-15T00:39:09.616Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/samtools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/stats/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.665Z","updated_at":"2024-11-15T00:39:09.665Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/samtools/stats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/view/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.713Z","updated_at":"2024-11-15T00:39:09.713Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/samtools/view/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/seacr/callpeak/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.758Z","updated_at":"2024-11-15T00:39:09.758Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/seacr/callpeak/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/bgziptabix/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.805Z","updated_at":"2024-11-15T00:39:09.805Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/tabix/bgziptabix/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/ucsc/bedclip/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.849Z","updated_at":"2024-11-15T00:39:09.849Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/ucsc/bedclip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/ucsc/bedgraphtobigwig/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.892Z","updated_at":"2024-11-15T00:39:09.892Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/ucsc/bedgraphtobigwig/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/untar/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.935Z","updated_at":"2024-11-15T00:39:09.935Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/modules/nf-core/untar/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/bam_sort_stats_samtools/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:09.978Z","updated_at":"2024-11-15T00:39:09.978Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/subworkflows/nf-core/bam_sort_stats_samtools/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/bam_stats_samtools/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:10.022Z","updated_at":"2024-11-15T00:39:10.022Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/subworkflows/nf-core/bam_stats_samtools/meta.yml","dependencies":[]},{"ecosystem":"docker","filepath":"dev/docker/master_local_module_image/Dockerfile","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:10.068Z","updated_at":"2024-11-15T00:39:10.068Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/dev/docker/master_local_module_image/Dockerfile","dependencies":[{"id":20736900089,"package_name":"nfcore/base","ecosystem":"docker","requirements":"2.1","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"dev/docker/master_local_module_image/environment.yml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:10.211Z","updated_at":"2024-11-15T00:39:10.211Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/dev/docker/master_local_module_image/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-11-15T00:39:10.256Z","updated_at":"2024-11-15T00:39:10.256Z","repository_link":"https://github.com/typekey/cutandtag/blob/main/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:35.035Z","updated_at":"2025-10-07T08:23:01.965Z","avatar_url":"https://github.com/typekey.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/58507","html_url":"https://science.ecosyste.ms/projects/58507"}