{"id":58551,"name":"nf-core-kmerseek","description":null,"url":"https://github.com/seanome/nf-core-kmerseek","last_synced_at":"2025-09-05T15:12:51.021Z","repository":{"id":239379670,"uuid":"799365738","full_name":"seanome/nf-core-kmerseek","owner":"seanome","description":null,"archived":false,"fork":false,"pushed_at":"2025-03-05T23:42:30.000Z","size":475,"stargazers_count":4,"open_issues_count":5,"forks_count":1,"subscribers_count":1,"default_branch":"dev","last_synced_at":"2025-03-06T00:27:19.524Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/seanome.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-05-11T23:13:28.000Z","updated_at":"2025-03-05T23:42:36.000Z","dependencies_parsed_at":"2024-05-18T01:24:24.085Z","dependency_job_id":"ef9a03a2-824a-4d05-9009-5cbc9d099652","html_url":"https://github.com/seanome/nf-core-kmerseek","commit_stats":null,"previous_names":["olgabot/nf-core-kmerseek","seanome/nf-core-kmerseek"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/seanome/nf-core-kmerseek","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seanome%2Fnf-core-kmerseek","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seanome%2Fnf-core-kmerseek/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seanome%2Fnf-core-kmerseek/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seanome%2Fnf-core-kmerseek/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seanome","download_url":"https://codeload.github.com/seanome/nf-core-kmerseek/tar.gz/refs/heads/dev","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seanome%2Fnf-core-kmerseek/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273775031,"owners_count":25165741,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"seanome","name":"Seanome","uuid":"182711386","kind":"organization","description":"","email":"info@seanome.org","website":null,"location":"United States of America","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/182711386?v=4","repositories_count":1,"last_synced_at":"2024-10-20T08:34:17.264Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/seanome","funding_links":[],"total_stars":0,"followers":1,"following":0,"created_at":"2024-10-20T08:34:17.277Z","updated_at":"2024-10-20T08:34:17.277Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seanome","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seanome/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"seanome/nf-core-kmerseek","html_url":"https://github.com/seanome/nf-core-kmerseek","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-30T19:03:58.210Z","updated_at":"2025-09-03T01:23:57.708Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/seanome%2Fnf-core-kmerseek","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/seanome%2Fnf-core-kmerseek/issues","issue_labels_count":{"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1,"COLLABORATOR":1},"pull_request_author_associations_count":{"COLLABORATOR":3},"issue_authors":{"olgabot":1,"codefair-io[bot]":1},"pull_request_authors":{"olgabot":3},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10102346,"issues_count":31523475,"pull_requests_count":97727319,"authors_count":10703653,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"COLLABORATOR":1,"NONE":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":3},"past_year_issue_authors":{"codefair-io[bot]":1,"olgabot":1},"past_year_pull_request_authors":{"olgabot":3},"maintainers":[{"login":"olgabot","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/olgabot"}],"active_maintainers":[{"login":"olgabot","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/olgabot"}]},"events":{"total":{"IssuesEvent":4,"WatchEvent":5,"IssueCommentEvent":3,"PushEvent":14,"PullRequestReviewEvent":1,"PullRequestEvent":5,"ForkEvent":1,"CreateEvent":1},"last_year":{"IssuesEvent":4,"WatchEvent":5,"IssueCommentEvent":3,"PushEvent":14,"PullRequestReviewEvent":1,"PullRequestEvent":5,"ForkEvent":1,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:25.428Z","updated_at":"2024-05-12T00:38:25.428Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/awsfulltest.yml","dependencies":[{"id":18035703863,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18035703864,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:25.832Z","updated_at":"2024-05-12T00:38:25.832Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/awstest.yml","dependencies":[{"id":18035704201,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18035704206,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:25.887Z","updated_at":"2024-05-12T00:38:25.887Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/branch.yml","dependencies":[{"id":18035704467,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:25.898Z","updated_at":"2024-05-12T00:38:25.898Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/ci.yml","dependencies":[{"id":18035704608,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18035704613,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18035705129,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:25.980Z","updated_at":"2024-05-12T00:38:25.980Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/clean-up.yml","dependencies":[{"id":18035705130,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:25.989Z","updated_at":"2024-05-12T00:38:25.989Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/download_pipeline.yml","dependencies":[{"id":18035705131,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18035705132,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":18035705133,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18035705134,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.008Z","updated_at":"2024-05-12T00:38:26.008Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/fix-linting.yml","dependencies":[{"id":18035705135,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18035705136,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":18035705137,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.016Z","updated_at":"2024-05-12T00:38:26.016Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/linting.yml","dependencies":[{"id":18035705138,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18035705139,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18035705140,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18035705141,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.024Z","updated_at":"2024-05-12T00:38:26.024Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/linting_comment.yml","dependencies":[{"id":18035705142,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"09f2f74827fd3a8607589e5ad7f9398816f540fe","direct":true,"kind":"composite","optional":false},{"id":18035705143,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.030Z","updated_at":"2024-05-12T00:38:26.030Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/.github/workflows/release-announcements.yml","dependencies":[{"id":18035705144,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":18035705145,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18035705146,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.333Z","updated_at":"2024-05-12T00:38:26.333Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.340Z","updated_at":"2024-05-12T00:38:26.340Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/sourmash/sketch/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.349Z","updated_at":"2024-05-12T00:38:26.349Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/modules/nf-core/sourmash/sketch/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.354Z","updated_at":"2024-05-12T00:38:26.354Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.362Z","updated_at":"2024-05-12T00:38:26.362Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-12T00:38:26.366Z","updated_at":"2024-05-12T00:38:26.366Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]},{"ecosystem":"conda","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-05-18T01:24:23.191Z","updated_at":"2024-05-18T01:24:23.191Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/modules/nf-core/fastqc/environment.yml","dependencies":[{"id":18138686304,"package_name":"fastqc","ecosystem":"conda","requirements":"0.12.1.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"conda","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-05-18T01:24:23.237Z","updated_at":"2024-05-18T01:24:23.237Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/modules/nf-core/multiqc/environment.yml","dependencies":[{"id":18138686327,"package_name":"multiqc","ecosystem":"conda","requirements":"1.21.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"conda","filepath":"modules/nf-core/sourmash/sketch/environment.yml","sha":null,"kind":"manifest","created_at":"2024-05-18T01:24:23.387Z","updated_at":"2024-05-18T01:24:23.387Z","repository_link":"https://github.com/seanome/nf-core-kmerseek/blob/dev/modules/nf-core/sourmash/sketch/environment.yml","dependencies":[{"id":18138686345,"package_name":"sourmash","ecosystem":"conda","requirements":"4.8.4.*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:35.087Z","updated_at":"2025-10-07T08:23:02.944Z","avatar_url":"https://github.com/seanome.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/58551","html_url":"https://science.ecosyste.ms/projects/58551","bibtex_url":"https://science.ecosyste.ms/projects/58551/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/58551/export.apalike"}