{"id":60241,"name":"plasmodiumdrugres","description":null,"url":"https://github.com/plasmogenepi/plasmodiumdrugres","last_synced_at":"2025-09-05T15:49:12.987Z","repository":{"id":272990690,"uuid":"918366701","full_name":"PlasmoGenEpi/plasmodiumdrugres","owner":"PlasmoGenEpi","description":null,"archived":false,"fork":false,"pushed_at":"2025-08-29T00:34:10.000Z","size":2821,"stargazers_count":1,"open_issues_count":4,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-08-29T01:37:00.373Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PlasmoGenEpi.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-01-17T19:30:44.000Z","updated_at":"2025-05-28T20:28:33.000Z","dependencies_parsed_at":"2025-08-21T20:13:29.557Z","dependency_job_id":"bd600ac5-1a28-44e6-a1e8-2ab66ceb7a3c","html_url":"https://github.com/PlasmoGenEpi/plasmodiumdrugres","commit_stats":null,"previous_names":["plasmogenepi/plasmodiumdrugres"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/PlasmoGenEpi/plasmodiumdrugres","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PlasmoGenEpi%2Fplasmodiumdrugres","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PlasmoGenEpi%2Fplasmodiumdrugres/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PlasmoGenEpi%2Fplasmodiumdrugres/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PlasmoGenEpi%2Fplasmodiumdrugres/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PlasmoGenEpi","download_url":"https://codeload.github.com/PlasmoGenEpi/plasmodiumdrugres/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PlasmoGenEpi%2Fplasmodiumdrugres/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273781109,"owners_count":25167123,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"PlasmoGenEpi","name":"PlasmoGenEpi","uuid":"140542976","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/140542976?v=4","repositories_count":1,"last_synced_at":"2023-08-02T18:45:28.723Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/PlasmoGenEpi","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-08-02T18:45:28.727Z","updated_at":"2023-08-02T18:45:28.727Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PlasmoGenEpi","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PlasmoGenEpi/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"PlasmoGenEpi/plasmodiumdrugres","html_url":"https://github.com/PlasmoGenEpi/plasmodiumdrugres","last_synced_at":"2025-08-31T11:56:10.535Z","status":null,"issues_count":3,"pull_requests_count":35,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":107589.56666666667,"issues_closed_count":0,"pull_requests_closed_count":30,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.02857142857142857,"merged_pull_requests_count":23,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":35,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":107589.56666666667,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":30,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.02857142857142857,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":23,"created_at":"2025-08-29T13:00:05.354Z","updated_at":"2025-08-31T11:56:10.536Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/PlasmoGenEpi%2Fplasmodiumdrugres","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/PlasmoGenEpi%2Fplasmodiumdrugres/issues","issue_labels_count":{"enhancement":2,"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"CONTRIBUTOR":2,"NONE":1},"pull_request_author_associations_count":{"CONTRIBUTOR":16,"MEMBER":12,"NONE":6},"issue_authors":{"kathryn1995":2,"a-hubbard":1},"pull_request_authors":{"kathryn1995":16,"nickjhathaway":12,"a-hubbard":6},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10103717,"issues_count":31516646,"pull_requests_count":97722052,"authors_count":10703692,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":2,"bug":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"CONTRIBUTOR":2,"NONE":1},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":16,"MEMBER":12,"NONE":6},"past_year_issue_authors":{"kathryn1995":2,"a-hubbard":1},"past_year_pull_request_authors":{"kathryn1995":16,"nickjhathaway":12,"a-hubbard":6},"maintainers":[{"login":"nickjhathaway","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nickjhathaway"}],"active_maintainers":[{"login":"nickjhathaway","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nickjhathaway"}]},"events":{"total":{"IssuesEvent":4,"DeleteEvent":24,"IssueCommentEvent":4,"PushEvent":154,"PullRequestReviewCommentEvent":1,"PullRequestReviewEvent":31,"PullRequestEvent":70,"CreateEvent":33},"last_year":{"IssuesEvent":4,"DeleteEvent":24,"IssueCommentEvent":4,"PushEvent":154,"PullRequestReviewCommentEvent":1,"PullRequestReviewEvent":31,"PullRequestEvent":70,"CreateEvent":33}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:28.045Z","updated_at":"2025-01-17T22:35:28.045Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/awsfulltest.yml","dependencies":[{"id":21515928463,"package_name":"octokit/request-action","ecosystem":"actions","requirements":"v2.x","direct":true,"kind":"composite","optional":false},{"id":21515928601,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21515928660,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:30.319Z","updated_at":"2025-01-17T22:35:30.319Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/awstest.yml","dependencies":[{"id":21515928708,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21515928709,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:30.608Z","updated_at":"2025-01-17T22:35:30.608Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/branch.yml","dependencies":[{"id":21515928710,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:31.617Z","updated_at":"2025-01-17T22:35:31.617Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/ci.yml","dependencies":[{"id":21515928766,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21515928767,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21515929072,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":21515929084,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"a4260408e20b96e80095f42ff7f1a15b27dd94ca","direct":true,"kind":"composite","optional":false},{"id":21515929127,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:34.738Z","updated_at":"2025-01-17T22:35:34.738Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":21515929218,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:35.498Z","updated_at":"2025-01-17T22:35:35.498Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":21515929267,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21515929268,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":21515929269,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":21515929270,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"4bb22c52d4f63406c49e94c804632975787312b3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:35.857Z","updated_at":"2025-01-17T22:35:35.857Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":21515929349,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21515929351,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":21515929477,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:37.698Z","updated_at":"2025-01-17T22:35:37.698Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/linting.yml","dependencies":[{"id":21515929791,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21515929792,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":21515929793,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21515929794,"package_name":"pietrobolcato/action-read-yaml","ecosystem":"actions","requirements":"1.1.0","direct":true,"kind":"composite","optional":false},{"id":21515929861,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:38.704Z","updated_at":"2025-01-17T22:35:38.704Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":21515929971,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"bf251b5aa9c2f7eeb574a96ee720e24f801b7c11","direct":true,"kind":"composite","optional":false},{"id":21515929972,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:40.599Z","updated_at":"2025-01-17T22:35:40.599Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/release-announcements.yml","dependencies":[{"id":21515930187,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":21515930383,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":21515930384,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/template_version_comment.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:43.136Z","updated_at":"2025-01-17T22:35:43.136Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/.github/workflows/template_version_comment.yml","dependencies":[{"id":21515930642,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21515930643,"package_name":"nichmor/minimal-read-yaml","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false},{"id":21515930927,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:48.400Z","updated_at":"2025-01-17T22:35:48.400Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:49.334Z","updated_at":"2025-01-17T22:35:49.334Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:50.067Z","updated_at":"2025-01-17T22:35:50.067Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:50.814Z","updated_at":"2025-01-17T22:35:50.814Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T22:35:51.343Z","updated_at":"2025-01-17T22:35:51.343Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-08-21T20:13:26.599Z","updated_at":"2025-08-21T20:13:26.599Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-08-21T20:13:26.659Z","updated_at":"2025-08-21T20:13:26.659Z","repository_link":"https://github.com/PlasmoGenEpi/plasmodiumdrugres/blob/main/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:37.003Z","updated_at":"2025-10-07T08:23:39.671Z","avatar_url":"https://github.com/PlasmoGenEpi.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/60241","html_url":"https://science.ecosyste.ms/projects/60241","bibtex_url":"https://science.ecosyste.ms/projects/60241/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/60241/export.apalike"}