{"id":60698,"name":"champlain","description":null,"url":"https://github.com/ramirobarrantes/champlain","last_synced_at":"2025-09-08T12:17:36.660Z","repository":{"id":246548775,"uuid":"821426893","full_name":"ramirobarrantes/champlain","owner":"ramirobarrantes","description":null,"archived":false,"fork":false,"pushed_at":"2024-11-19T17:02:27.000Z","size":354,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"TEMPLATE","last_synced_at":"2024-11-19T17:33:35.349Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ramirobarrantes.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-06-28T14:09:26.000Z","updated_at":"2024-11-19T17:02:32.000Z","dependencies_parsed_at":"2024-10-28T11:54:58.068Z","dependency_job_id":null,"html_url":"https://github.com/ramirobarrantes/champlain","commit_stats":null,"previous_names":["ramirobarrantes/champlain"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ramirobarrantes/champlain","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fchamplain","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fchamplain/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fchamplain/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fchamplain/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ramirobarrantes","download_url":"https://codeload.github.com/ramirobarrantes/champlain/tar.gz/refs/heads/TEMPLATE","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fchamplain/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274182039,"owners_count":25236617,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ramirobarrantes","name":"Ramiro","uuid":"15050055","kind":"user","description":"Statistician/bioinformatician working for academia and industry. A data scientist of genomes!","email":"","website":null,"location":null,"twitter":null,"company":"University of Vermont","icon_url":"https://avatars.githubusercontent.com/u/15050055?u=c14ec96aff05d8929aaac8eee5ef59eb5ea55ad1\u0026v=4","repositories_count":1,"last_synced_at":"2024-06-14T21:29:29.642Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ramirobarrantes","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-06-14T21:29:30.377Z","updated_at":"2024-06-14T21:29:30.377Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ramirobarrantes","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ramirobarrantes/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"ramirobarrantes/champlain","html_url":"https://github.com/ramirobarrantes/champlain","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-02T03:10:12.397Z","updated_at":"2025-09-02T21:01:00.710Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fchamplain","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fchamplain/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"OWNER":36},"issue_authors":{},"pull_request_authors":{"ramirobarrantes":36},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10165784,"issues_count":31999265,"pull_requests_count":100269215,"authors_count":10729006,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"OWNER":17},"past_year_issue_authors":{},"past_year_pull_request_authors":{"ramirobarrantes":17},"maintainers":[{"login":"ramirobarrantes","count":36,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ramirobarrantes"}],"active_maintainers":[{"login":"ramirobarrantes","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ramirobarrantes"}]},"events":{"total":{"PushEvent":25,"PullRequestEvent":18},"last_year":{"PushEvent":25,"PullRequestEvent":18}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:58.223Z","updated_at":"2024-06-28T16:38:58.223Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/awsfulltest.yml","dependencies":[{"id":18880403010,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18880403011,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:58.498Z","updated_at":"2024-06-28T16:38:58.498Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/awstest.yml","dependencies":[{"id":18880403032,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18880403033,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:58.698Z","updated_at":"2024-06-28T16:38:58.698Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/branch.yml","dependencies":[{"id":18880404005,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:58.974Z","updated_at":"2024-06-28T16:38:58.974Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/ci.yml","dependencies":[{"id":18880404020,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18880404021,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18880404022,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:59.043Z","updated_at":"2024-06-28T16:38:59.043Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/clean-up.yml","dependencies":[{"id":18880404042,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:59.101Z","updated_at":"2024-06-28T16:38:59.101Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/download_pipeline.yml","dependencies":[{"id":18880404079,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18880404080,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":18880404081,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18880404082,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:59.281Z","updated_at":"2024-06-28T16:38:59.281Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/fix-linting.yml","dependencies":[{"id":18880404086,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18880404087,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":18880404088,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:59.350Z","updated_at":"2024-06-28T16:38:59.350Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/linting.yml","dependencies":[{"id":18880404090,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18880404091,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18880404092,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18880404093,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:59.459Z","updated_at":"2024-06-28T16:38:59.459Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/linting_comment.yml","dependencies":[{"id":18880404111,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"09f2f74827fd3a8607589e5ad7f9398816f540fe","direct":true,"kind":"composite","optional":false},{"id":18880404112,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:38:59.877Z","updated_at":"2024-06-28T16:38:59.877Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/.github/workflows/release-announcements.yml","dependencies":[{"id":18880404126,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":18880404127,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18880404128,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:39:00.646Z","updated_at":"2024-06-28T16:39:00.646Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:39:00.819Z","updated_at":"2024-06-28T16:39:00.819Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:39:00.927Z","updated_at":"2024-06-28T16:39:00.927Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:39:01.041Z","updated_at":"2024-06-28T16:39:01.041Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-28T16:39:01.147Z","updated_at":"2024-06-28T16:39:01.147Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-10-28T11:54:57.325Z","updated_at":"2024-10-28T11:54:57.325Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-10-28T11:54:57.332Z","updated_at":"2024-10-28T11:54:57.332Z","repository_link":"https://github.com/ramirobarrantes/champlain/blob/TEMPLATE/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:37.556Z","updated_at":"2025-10-07T08:23:49.429Z","avatar_url":"https://github.com/ramirobarrantes.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/60698","html_url":"https://science.ecosyste.ms/projects/60698","bibtex_url":"https://science.ecosyste.ms/projects/60698/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/60698/export.apalike"}