{"id":60905,"name":"singlecellseq","description":"Batch effects and the effective design of single-cell gene expression studies","url":"https://github.com/jdblischak/singlecellseq","last_synced_at":"2025-09-08T12:23:49.259Z","repository":{"id":27848115,"uuid":"31338373","full_name":"jdblischak/singleCellSeq","owner":"jdblischak","description":"Batch effects and the effective design of single-cell gene expression studies","archived":false,"fork":false,"pushed_at":"2019-07-23T15:25:12.000Z","size":1393239,"stargazers_count":101,"open_issues_count":2,"forks_count":68,"subscribers_count":11,"default_branch":"master","last_synced_at":"2025-05-31T15:29:33.741Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://jdblischak.github.io/singleCellSeq/analysis","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jdblischak.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION","codeowners":null,"security":null,"support":null}},"created_at":"2015-02-25T22:08:39.000Z","updated_at":"2025-04-03T07:47:56.000Z","dependencies_parsed_at":"2022-09-03T15:01:53.323Z","dependency_job_id":null,"html_url":"https://github.com/jdblischak/singleCellSeq","commit_stats":null,"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/jdblischak/singleCellSeq","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2FsingleCellSeq","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2FsingleCellSeq/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2FsingleCellSeq/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2FsingleCellSeq/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jdblischak","download_url":"https://codeload.github.com/jdblischak/singleCellSeq/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2FsingleCellSeq/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274182908,"owners_count":25236843,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"jdblischak","name":"John Blischak","uuid":"1608317","kind":"user","description":"Freelance Scientific Software Developer","email":"","website":"https://jdblischak.com/","location":"Ohio, USA","twitter":"jdblischak","company":null,"icon_url":"https://avatars.githubusercontent.com/u/1608317?u=cf65e154dab68a715ed0372547b407c40a9729ed\u0026v=4","repositories_count":39,"last_synced_at":"2023-03-23T03:35:58.300Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/jdblischak","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T16:20:21.771Z","updated_at":"2023-03-23T03:35:58.708Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jdblischak","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jdblischak/repositories"},"packages":[],"commits":{"id":1418059,"full_name":"jdblischak/singleCellSeq","default_branch":"master","committers":[{"name":"John Blischak","email":"jdblischak@gmail.com","login":null,"count":552},{"name":"Po Yuan Tung","email":"ptung@uchicago.edu","login":null,"count":312},{"name":"jhsiao999","email":"joyce.hsiao1@gmail.com","login":null,"count":280},{"name":"PYTiMac","email":"ptung@nsit-dhcp-205-208-032-090.uchicago.edu","login":null,"count":3},{"name":"David Knowles","email":"davidknowles@DN0a23017c.SUNet","login":null,"count":2},{"name":"David Knowles","email":"davidknowles@DN0a2309e6.SUNet","login":null,"count":2},{"name":"David Knowles","email":"knowles84@gmail.com","login":null,"count":2},{"name":"David Knowles","email":"davidknowles@IBIIS-MacBook-Pro.local","login":null,"count":1},{"name":"PYTiMac","email":"ptung@nsit-dhcp-205-208-032-043.uchicago.edu","login":null,"count":1},{"name":"jhsiao999","email":"joyce.hsiao1@domail.com","login":null,"count":1}],"total_commits":1156,"total_committers":10,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":115.6,"dds":0.5224913494809689,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2024-11-14T22:14:55.535Z","last_synced_commit":"4c917b1e1087d292a4cddfb7a6a4548f1ca16431","created_at":"2023-10-25T21:43:33.868Z","updated_at":"2024-11-14T22:14:55.536Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2FsingleCellSeq/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5482748,"commits_count":854068090,"contributors_count":31125167,"owners_count":908074,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"jdblischak/singlecellseq","html_url":"https://github.com/jdblischak/singlecellseq","last_synced_at":"2025-05-31T04:41:03.791Z","status":null,"issues_count":5,"pull_requests_count":54,"avg_time_to_close_issue":8433402.0,"avg_time_to_close_pull_request":64159.166666666664,"issues_closed_count":3,"pull_requests_closed_count":54,"pull_request_authors_count":3,"issue_authors_count":4,"avg_comments_per_issue":3.4,"avg_comments_per_pull_request":0.48148148148148145,"merged_pull_requests_count":53,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-10-14T23:55:23.225Z","updated_at":"2025-05-31T04:41:03.792Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2Fsinglecellseq","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jdblischak%2Fsinglecellseq/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":4,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":41,"OWNER":13},"issue_authors":{"WT215":2,"ateissan":1,"jhsiao999":1,"mbuttner":1},"pull_request_authors":{"jhsiao999":39,"jdblischak":13,"davidaknowles":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-22T00:00:16.838Z","repositories_count":8477485,"issues_count":15901687,"pull_requests_count":37901090,"authors_count":5664582,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"jdblischak","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jdblischak"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":6,"ForkEvent":1},"last_year":{"WatchEvent":6,"ForkEvent":1}},"keywords":[],"dependencies":[],"score":6.937314081223682,"created_at":"2025-09-04T15:51:37.776Z","updated_at":"2025-10-07T08:23:53.762Z","avatar_url":"https://github.com/jdblischak.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/60905","html_url":"https://science.ecosyste.ms/projects/60905"}