{"id":61289,"name":"QDNAseq","description":"QDNAseq package for Bioconductor","url":"https://github.com/ccagc/qdnaseq","last_synced_at":"2025-09-08T12:28:16.143Z","repository":{"id":14867713,"uuid":"17591170","full_name":"ccagc/QDNAseq","owner":"ccagc","description":"QDNAseq package for Bioconductor","archived":false,"fork":false,"pushed_at":"2024-07-27T22:01:44.000Z","size":13875,"stargazers_count":50,"open_issues_count":38,"forks_count":30,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-08-29T01:42:41.378Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ccagc.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-03-10T11:57:22.000Z","updated_at":"2025-04-16T14:27:51.000Z","dependencies_parsed_at":"2023-01-16T20:02:03.335Z","dependency_job_id":"6a45035f-430d-459f-ac3c-d9c910d31861","html_url":"https://github.com/ccagc/QDNAseq","commit_stats":{"total_commits":233,"total_committers":14,"mean_commits":"16.642857142857142","dds":"0.36909871244635195","last_synced_commit":"19b53dd5c4851f0a8a0e21f34ed1a3793058cb66"},"previous_names":[],"tags_count":28,"template":false,"template_full_name":null,"purl":"pkg:github/ccagc/QDNAseq","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ccagc","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274184741,"owners_count":25237250,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ccagc","name":"Tumor Genome Analysis Core","uuid":"6906613","kind":"organization","description":"","email":null,"website":"http://www.tgac.nl","location":"Amsterdam, Netherlands","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6906613?v=4","repositories_count":1,"last_synced_at":"2023-08-18T06:30:28.540Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ccagc","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T14:46:15.415Z","updated_at":"2023-08-18T06:30:28.564Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ccagc","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ccagc/repositories"},"packages":[{"id":8420386,"name":"QDNAseq","ecosystem":"bioconductor","description":"Quantitative DNA Sequencing for Chromosomal Aberrations","homepage":"https://github.com/ccagc/QDNAseq ","licenses":"GPL","normalized_licenses":["GPL-2.0+"],"repository_url":"https://github.com/ccagc/QDNAseq","keywords_array":["CopyNumberVariation","DNASeq","Genetics","GenomeAnnotation","Preprocessing","QualityControl","Sequencing","Software"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:53:33.744Z","latest_release_published_at":"2025-04-28T16:02:50.336Z","latest_release_number":"1.44.0","last_synced_at":"2025-08-28T21:20:19.615Z","created_at":"2023-10-12T14:53:33.552Z","updated_at":"2025-08-29T04:52:29.557Z","registry_url":"https://bioconductor.org/packages/QDNAseq","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/QDNAseq/inst/doc/QDNAseq.pdf","metadata":{},"repo_metadata":{"id":14867713,"uuid":"17591170","full_name":"ccagc/QDNAseq","owner":"ccagc","description":"QDNAseq package for Bioconductor","archived":false,"fork":false,"pushed_at":"2024-07-27T22:01:44.000Z","size":13875,"stargazers_count":50,"open_issues_count":39,"forks_count":29,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-07-28T19:36:39.269Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ccagc.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-03-10T11:57:22.000Z","updated_at":"2025-04-16T14:27:51.000Z","dependencies_parsed_at":"2023-01-16T20:02:03.335Z","dependency_job_id":"6a45035f-430d-459f-ac3c-d9c910d31861","html_url":"https://github.com/ccagc/QDNAseq","commit_stats":{"total_commits":233,"total_committers":14,"mean_commits":"16.642857142857142","dds":"0.36909871244635195","last_synced_commit":"19b53dd5c4851f0a8a0e21f34ed1a3793058cb66"},"previous_names":[],"tags_count":28,"template":false,"template_full_name":null,"purl":"pkg:github/ccagc/QDNAseq","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ccagc","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272559317,"owners_count":24955339,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-28T02:00:10.768Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"ccagc","name":"Tumor Genome Analysis Core","uuid":"6906613","kind":"organization","description":"","email":null,"website":"http://www.tgac.nl","location":"Amsterdam, Netherlands","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6906613?v=4","repositories_count":1,"last_synced_at":"2023-08-18T06:30:28.540Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ccagc","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T14:46:15.415Z","updated_at":"2023-08-18T06:30:28.564Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ccagc","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ccagc/repositories"},"tags":[{"name":"1.41.3","sha":"c07ae776d5b73a9cf0b2950c41490fe6b76274e5","kind":"commit","published_at":"2024-07-27T21:59:50.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.41.3","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.41.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.41.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.41.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.41.3/manifests"},{"name":"1.41.2","sha":"a60496655884c5389d5f0a2989a5c40eab822b40","kind":"commit","published_at":"2024-07-23T13:25:40.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.41.2","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.41.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.41.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.41.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.41.2/manifests"},{"name":"1.41.1","sha":"ca72274cf7b23734b048371d00135324b2208c8c","kind":"tag","published_at":"2024-07-20T21:39:11.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.41.1","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.41.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.41.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.41.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.41.1/manifests"},{"name":"1.35.0","sha":"743de98f48e84f34ed8c0d97de09f719dd5c6fb5","kind":"commit","published_at":"2022-11-01T15:09:22.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.35.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.35.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.35.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.35.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.35.0/manifests"},{"name":"1.34.0","sha":"727c1cbc46614f94743390a2bfa04b6c9e059718","kind":"commit","published_at":"2022-11-01T15:09:22.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.34.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.34.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.34.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.34.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.34.0/manifests"},{"name":"1.33.1","sha":"41d4da2458593272964ce2121dc8df1b38f78bc6","kind":"tag","published_at":"2022-04-27T20:08:48.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.33.1","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.33.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.33.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.33.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.33.1/manifests"},{"name":"1.33.0","sha":"ef2452440277cc07f9e13b96ce134f575b5d7213","kind":"commit","published_at":"2022-04-26T21:04:50.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.33.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.33.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.33.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.33.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.33.0/manifests"},{"name":"1.32.0","sha":"f85188feab60b9d2f7dfaf76e0d2bde0a884c9ec","kind":"commit","published_at":"2022-04-26T21:03:45.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.32.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.32.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.32.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.32.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.32.0/manifests"},{"name":"1.31.0","sha":"b77cbd78fef33c4695b990bc76298936d9fcebf4","kind":"commit","published_at":"2021-10-27T20:35:41.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.31.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.31.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.31.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.31.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.31.0/manifests"},{"name":"1.30.0","sha":"cd4ceaae945eab2a170b68b0e90f9388dcbf87f6","kind":"commit","published_at":"2021-10-27T20:34:47.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.30.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.30.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.30.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.30.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.30.0/manifests"},{"name":"1.29.6","sha":"461220ff4abf82fa38919a11f739847f57bade96","kind":"tag","published_at":"2021-10-23T20:22:12.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.29.6","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.29.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.29.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.6/manifests"},{"name":"1.29.5","sha":"a32bf44181d83810690e3bd13f76d7c994ce0b97","kind":"tag","published_at":"2021-10-20T17:07:59.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.29.5","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.29.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.29.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.5/manifests"},{"name":"1.29.4","sha":"cc25f411379cfe4697c7bf2e64e72aed139f374c","kind":"tag","published_at":"2021-10-16T16:57:27.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.29.4","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.29.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.29.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.4/manifests"},{"name":"1.29.3","sha":"c55fc3ba9f56dc45a51ecd8c8d786526268ae616","kind":"tag","published_at":"2021-10-04T22:08:55.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.29.3","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.29.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.29.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.3/manifests"},{"name":"1.29.2","sha":"38d2d292f53160e984b235ae2190b6cb0973723b","kind":"tag","published_at":"2021-09-22T14:05:43.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.29.2","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.29.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.29.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.2/manifests"},{"name":"1.29.1","sha":"edf9be4049d53cbd0a75d5f73bfd18a1e0b28e9e","kind":"tag","published_at":"2021-08-26T10:57:24.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.29.1","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.29.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.29.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.29.1/manifests"},{"name":"1.26.0","sha":"1d27a957e33d354ac6759b726e6d9df60d31a023","kind":"tag","published_at":"2021-02-15T03:13:22.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.26.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.26.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.26.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.26.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.26.0/manifests"},{"name":"1.25.0","sha":"924ede64c0c04133f7ba7f10061d2a43570ede99","kind":"commit","published_at":"2020-04-27T18:39:11.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.25.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.25.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.25.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.25.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.25.0/manifests"},{"name":"1.24.0","sha":"e3278994fbd2ec46e2914f359100ae181f1bd4bd","kind":"commit","published_at":"2020-04-27T18:39:11.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.24.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.24.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.24.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.24.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.24.0/manifests"},{"name":"1.23.0","sha":"d0d6442358d312a8f34bc2a77e49d0d6d7e87370","kind":"commit","published_at":"2019-10-29T17:37:19.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.23.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.23.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.23.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.23.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.23.0/manifests"},{"name":"1.22.0","sha":"679f3886aafec81252ae6fda256d4726b6ee0b3c","kind":"commit","published_at":"2019-10-29T17:08:53.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.22.0","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.22.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.22.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.22.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.22.0/manifests"},{"name":"1.21.6","sha":"490d335430afb6c2c50e3b8b70def4d4533b872d","kind":"tag","published_at":"2019-09-25T15:12:25.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.21.6","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.21.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.21.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.6/manifests"},{"name":"1.21.5","sha":"daa3cd7de00e65b211facde0006904024162661b","kind":"tag","published_at":"2019-09-10T00:23:39.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.21.5","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.21.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.21.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.5/manifests"},{"name":"1.21.4","sha":"d579013d911c58b604170e4b785f14e294f21967","kind":"tag","published_at":"2019-09-06T19:55:18.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.21.4","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.21.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.21.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.4/manifests"},{"name":"1.21.3","sha":"94f8729a12aae22940dac0ba77294dfda6b42980","kind":"tag","published_at":"2019-09-06T19:12:17.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.21.3","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.21.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.21.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.3/manifests"},{"name":"1.21.2","sha":"b4c63ff15214f052acca52da6366be5167d7b011","kind":"tag","published_at":"2019-09-04T21:02:47.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.21.2","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.21.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.21.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.2/manifests"},{"name":"1.21.1","sha":"ba72a2108dddf55e43c9491118c0e7cf27c433b7","kind":"tag","published_at":"2019-09-03T14:51:55.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/1.21.1","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/1.21.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@1.21.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/1.21.1/manifests"},{"name":"v1.9.2-HMF.1","sha":"2f99f0292d3ba08dd3f80ae27916edab5f4c71bf","kind":"commit","published_at":"2016-10-18T11:05:01.000Z","download_url":"https://codeload.github.com/ccagc/QDNAseq/tar.gz/v1.9.2-HMF.1","html_url":"https://github.com/ccagc/QDNAseq/releases/tag/v1.9.2-HMF.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/ccagc/QDNAseq@v1.9.2-HMF.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/v1.9.2-HMF.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/tags/v1.9.2-HMF.1/manifests"}]},"repo_metadata_updated_at":"2025-08-29T04:52:29.557Z","dependent_packages_count":4,"downloads":62136,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":16.112852664576803,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.370950888192268},"purl":"pkg:bioconductor/QDNAseq","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/QDNAseq","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/QDNAseq","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/QDNAseq/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-28T21:40:40.219Z","issues_count":99,"pull_requests_count":11,"avg_time_to_close_issue":17033574.4375,"avg_time_to_close_pull_request":18286593.444444444,"issues_closed_count":64,"pull_requests_closed_count":9,"pull_request_authors_count":7,"issue_authors_count":51,"avg_comments_per_issue":2.686868686868687,"avg_comments_per_pull_request":2.909090909090909,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":7,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":6940691.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":0.42857142857142855,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/issues","maintainers":[{"login":"HenrikBengtsson","count":34,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/HenrikBengtsson"},{"login":"ilarischeinin","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ilarischeinin"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QDNAseq/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QDNAseq/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QDNAseq/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QDNAseq/related_packages","maintainers":[{"uuid":"d.sie@vumc.nl","login":null,"name":"Daoud Sie","email":"d.sie@vumc.nl","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-25T13:20:30.756Z","updated_at":"2023-11-25T13:20:30.756Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/d.sie@vumc.nl/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403089,"full_name":"ccagc/QDNAseq","default_branch":"master","committers":[{"name":"Henrik Bengtsson","email":"hb@aroma-project.org","login":null,"count":147},{"name":"Daoud Sie","email":"d.sie@vumc.nl","login":null,"count":25},{"name":"Ilari Scheinin","email":"ilari.scheinin@gmail.com","login":null,"count":21},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":14},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":null,"count":10},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":4},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"Dijk","email":"e.dijk1@CZC722753Q.vumc.nl","login":null,"count":1},{"name":"Marc Carlson","email":"mcarlson@fhcrc.org","login":null,"count":1},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1},{"name":"Roel Kluin","email":"roel.kluin@gmail.com","login":null,"count":1}],"total_commits":233,"total_committers":14,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":16.642857142857142,"dds":0.36909871244635195,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2024-06-04T12:28:37.572Z","last_synced_commit":"19b53dd5c4851f0a8a0e21f34ed1a3793058cb66","created_at":"2023-10-25T13:05:17.281Z","updated_at":"2024-06-04T12:28:37.573Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"ccagc/QDNAseq","html_url":"https://github.com/ccagc/QDNAseq","last_synced_at":"2025-08-31T16:34:06.560Z","status":null,"issues_count":99,"pull_requests_count":11,"avg_time_to_close_issue":17033574.4375,"avg_time_to_close_pull_request":18286593.444444444,"issues_closed_count":64,"pull_requests_closed_count":9,"pull_request_authors_count":7,"issue_authors_count":52,"avg_comments_per_issue":2.6666666666666665,"avg_comments_per_pull_request":2.909090909090909,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":6,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":13629612.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":0.16666666666666666,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-04-09T14:37:46.206Z","updated_at":"2025-09-02T06:07:01.078Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ccagc%2FQDNAseq/issues","issue_labels_count":{"question":8,"bug":8,"help wanted":4,"enhancement":4,"invalid":3,"CGHcall package":2,"wontfix":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":62,"COLLABORATOR":31,"MEMBER":4,"CONTRIBUTOR":2},"pull_request_author_associations_count":{"NONE":4,"CONTRIBUTOR":3,"COLLABORATOR":3,"MEMBER":1},"issue_authors":{"HenrikBengtsson":31,"jiading":6,"ilarischeinin":4,"helaersr":3,"sxv":3,"RodrigoGM":2,"lbeltrame":2,"alexvasilikop":2,"kojimak324":2,"hannesbecher":2,"griffinfarrow":1,"dakl":1,"mmterpstra":1,"vlshesketh":1,"J-NYS":1,"jpoell":1,"nikleotide":1,"tashaann":1,"johali":1,"HJeffery":1,"liuyangzzu":1,"argymeg":1,"mahmadza":1,"minw2828":1,"cjw85":1,"ralanany":1,"Riverzrw":1,"rgranit":1,"biocyberman":1,"shashwatsahay":1,"Urja25":1,"zetamui":1,"bibbers93":1,"briverog":1,"ctrnsntx":1,"LanyingWei":1,"henryone0910":1,"jihen-lau":1,"JocelynSP":1,"lightowlers":1,"RMParkes":1,"hd00ljy":1,"srinew":1,"palakpatel09":1,"funnell":1,"dthung":1,"jppmatos":1,"SebastianHollizeck":1,"u0054600":1,"matthdsm":1,"asaki1986":1,"ghost":1},"pull_request_authors":{"HenrikBengtsson":3,"RodrigoGM":2,"sambrightman":2,"marcjwilliams1":1,"ilarischeinin":1,"edk360":1,"RoelKluin":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10062770,"issues_count":31096038,"pull_requests_count":94471412,"authors_count":10686459,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":6},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"alexvasilikop":1,"griffinfarrow":1,"jihen-lau":1,"jppmatos":1,"minw2828":1,"ralanany":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"HenrikBengtsson","count":34,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/HenrikBengtsson"},{"login":"ilarischeinin","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ilarischeinin"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":7,"WatchEvent":3,"IssueCommentEvent":5,"ForkEvent":3},"last_year":{"IssuesEvent":7,"WatchEvent":3,"IssueCommentEvent":5,"ForkEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-19T19:10:10.935Z","updated_at":"2022-08-19T19:10:10.935Z","repository_link":"https://github.com/ccagc/QDNAseq/blob/master/DESCRIPTION","dependencies":[{"id":2075769450,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.1.0","direct":true,"kind":"depends","optional":false},{"id":2075769451,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2075769452,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2075769453,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2075769454,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2075769455,"package_name":"Biobase","ecosystem":"cran","requirements":"\u003e= 2.18.0","direct":true,"kind":"imports","optional":false},{"id":2075769456,"package_name":"CGHbase","ecosystem":"cran","requirements":"\u003e= 1.18.0","direct":true,"kind":"imports","optional":false},{"id":2075769457,"package_name":"CGHcall","ecosystem":"cran","requirements":"\u003e= 2.18.0","direct":true,"kind":"imports","optional":false},{"id":2075769458,"package_name":"DNAcopy","ecosystem":"cran","requirements":"\u003e= 1.32.0","direct":true,"kind":"imports","optional":false},{"id":2075769459,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"\u003e= 1.20","direct":true,"kind":"imports","optional":false},{"id":2075769460,"package_name":"IRanges","ecosystem":"cran","requirements":"\u003e= 2.2","direct":true,"kind":"imports","optional":false},{"id":2075769461,"package_name":"matrixStats","ecosystem":"cran","requirements":"\u003e= 0.60.0","direct":true,"kind":"imports","optional":false},{"id":2075769462,"package_name":"R.utils","ecosystem":"cran","requirements":"\u003e= 2.9.0","direct":true,"kind":"imports","optional":false},{"id":2075769463,"package_name":"Rsamtools","ecosystem":"cran","requirements":"\u003e= 1.20","direct":true,"kind":"imports","optional":false},{"id":2075769464,"package_name":"future.apply","ecosystem":"cran","requirements":"\u003e= 1.8.1","direct":true,"kind":"imports","optional":false},{"id":2075769465,"package_name":"BiocStyle","ecosystem":"cran","requirements":"\u003e= 1.8.0","direct":true,"kind":"suggests","optional":false},{"id":2075769466,"package_name":"BSgenome","ecosystem":"cran","requirements":"\u003e= 1.38.0","direct":true,"kind":"suggests","optional":false},{"id":2075769467,"package_name":"digest","ecosystem":"cran","requirements":"\u003e= 0.6.20","direct":true,"kind":"suggests","optional":false},{"id":2075769468,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"\u003e= 1.6.0","direct":true,"kind":"suggests","optional":false},{"id":2075769469,"package_name":"future","ecosystem":"cran","requirements":"\u003e= 1.22.1","direct":true,"kind":"suggests","optional":false},{"id":2075769470,"package_name":"parallelly","ecosystem":"cran","requirements":"\u003e= 1.28.1","direct":true,"kind":"suggests","optional":false},{"id":2075769471,"package_name":"R.cache","ecosystem":"cran","requirements":"\u003e= 0.13.0","direct":true,"kind":"suggests","optional":false},{"id":2075769472,"package_name":"QDNAseq.hg19","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2075769474,"package_name":"QDNAseq.mm10","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2023-01-11T18:55:23.942Z","updated_at":"2023-01-11T18:55:23.942Z","repository_link":"https://github.com/ccagc/QDNAseq/blob/master/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":6870234135,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6870234136,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":6870234137,"package_name":"r-lib/actions/setup-tinytex","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":6870234138,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":6870234139,"package_name":"actions/cache","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":6870234140,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/covr.yaml","sha":null,"kind":"manifest","created_at":"2023-01-11T18:55:23.990Z","updated_at":"2023-01-11T18:55:23.990Z","repository_link":"https://github.com/ccagc/QDNAseq/blob/master/.github/workflows/covr.yaml","dependencies":[{"id":6870234141,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6870234142,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":6870234143,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":6870234144,"package_name":"actions/cache","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":18.153555419604935,"created_at":"2025-09-08T10:44:25.129Z","updated_at":"2025-10-07T08:24:01.449Z","avatar_url":"https://github.com/ccagc.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","bioconductor","gene","peptides","digest","cleavage","bioc","annotation-agnostic","peak-detection","mass-spectrometry"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61289","html_url":"https://science.ecosyste.ms/projects/61289"}