{"id":61306,"name":"rGREAT","description":"GREAT Analysis - Functional Enrichment on Genomic Regions","url":"https://github.com/jokergoo/rgreat","last_synced_at":"2025-09-08T12:29:22.589Z","repository":{"id":25033910,"uuid":"28453535","full_name":"jokergoo/rGREAT","owner":"jokergoo","description":"GREAT Analysis - Functional Enrichment on Genomic Regions","archived":false,"fork":false,"pushed_at":"2025-03-13T10:29:50.000Z","size":25641,"stargazers_count":90,"open_issues_count":20,"forks_count":13,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-09-05T19:11:42.968Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://jokergoo.github.io/rGREAT","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jokergoo.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2014-12-24T15:54:59.000Z","updated_at":"2025-08-21T07:02:54.000Z","dependencies_parsed_at":"2023-01-14T02:00:57.726Z","dependency_job_id":"6271763d-b388-4438-8d2d-99950050d4a1","html_url":"https://github.com/jokergoo/rGREAT","commit_stats":{"total_commits":262,"total_committers":18,"mean_commits":"14.555555555555555","dds":"0.37786259541984735","last_synced_commit":"70a34fb23aed6f5534930ab59f1383e01e4057b9"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/jokergoo/rGREAT","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jokergoo","download_url":"https://codeload.github.com/jokergoo/rGREAT/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274184775,"owners_count":25237261,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"jokergoo","name":"Zuguang Gu","uuid":"449218","kind":"user","description":"A bioinformagician","email":"","website":"http://jokergoo.github.io","location":"Heidelberg, Germany","twitter":null,"company":"German Cancer Research Center","icon_url":"https://avatars.githubusercontent.com/u/449218?u=50fdc4f0c14f7ca17e2053a5aa2841a4b91e4700\u0026v=4","repositories_count":28,"last_synced_at":"2023-03-27T21:22:07.393Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/jokergoo","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-04T03:20:30.518Z","updated_at":"2023-03-27T21:22:07.449Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jokergoo","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jokergoo/repositories"},"packages":[{"id":8420499,"name":"rGREAT","ecosystem":"bioconductor","description":"GREAT Analysis - Functional Enrichment on Genomic Regions","homepage":"https://github.com/jokergoo/rGREAT http://great.stanford.edu/public/html/ ","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/jokergoo/rGREAT","keywords_array":["Coverage","GO","GeneSetEnrichment","GenomeAnnotation","Pathways","Sequencing","Software","WholeGenome"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:56:00.070Z","latest_release_published_at":"2025-05-16T12:03:49.320Z","latest_release_number":"2.10.0","last_synced_at":"2025-08-28T21:40:18.208Z","created_at":"2023-10-12T14:55:59.933Z","updated_at":"2025-08-29T04:52:43.115Z","registry_url":"https://bioconductor.org/packages/rGREAT","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/rGREAT/inst/doc/rGREAT.pdf","metadata":{},"repo_metadata":{"id":25033910,"uuid":"28453535","full_name":"jokergoo/rGREAT","owner":"jokergoo","description":"GREAT Analysis - Functional Enrichment on Genomic Regions","archived":false,"fork":false,"pushed_at":"2025-03-13T10:29:50.000Z","size":25641,"stargazers_count":90,"open_issues_count":20,"forks_count":13,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-08-29T01:48:17.652Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://jokergoo.github.io/rGREAT","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jokergoo.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2014-12-24T15:54:59.000Z","updated_at":"2025-08-21T07:02:54.000Z","dependencies_parsed_at":"2023-01-14T02:00:57.726Z","dependency_job_id":"6271763d-b388-4438-8d2d-99950050d4a1","html_url":"https://github.com/jokergoo/rGREAT","commit_stats":{"total_commits":262,"total_committers":18,"mean_commits":"14.555555555555555","dds":"0.37786259541984735","last_synced_commit":"70a34fb23aed6f5534930ab59f1383e01e4057b9"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/jokergoo/rGREAT","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jokergoo","download_url":"https://codeload.github.com/jokergoo/rGREAT/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272630967,"owners_count":24967104,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-29T02:00:10.610Z","response_time":87,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"jokergoo","name":"Zuguang Gu","uuid":"449218","kind":"user","description":"A bioinformagician","email":"","website":"http://jokergoo.github.io","location":"Heidelberg, Germany","twitter":null,"company":"German Cancer Research Center","icon_url":"https://avatars.githubusercontent.com/u/449218?u=50fdc4f0c14f7ca17e2053a5aa2841a4b91e4700\u0026v=4","repositories_count":28,"last_synced_at":"2023-03-27T21:22:07.393Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/jokergoo","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-04T03:20:30.518Z","updated_at":"2023-03-27T21:22:07.449Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jokergoo","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jokergoo/repositories"},"tags":[{"name":"1.1.0","sha":"e2cdeffb185183cb8d09ee9d2adf75f296b755c0","kind":"commit","published_at":"2015-04-17T04:42:01.000Z","download_url":"https://codeload.github.com/jokergoo/rGREAT/tar.gz/1.1.0","html_url":"https://github.com/jokergoo/rGREAT/releases/tag/1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/jokergoo/rGREAT@1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/tags/1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/tags/1.1.0/manifests"}]},"repo_metadata_updated_at":"2025-08-29T04:52:43.115Z","dependent_packages_count":3,"downloads":65966,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":17.24340175953079,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.747800586510263},"purl":"pkg:bioconductor/rGREAT","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/rGREAT","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/rGREAT","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/rGREAT/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-28T21:49:40.028Z","issues_count":56,"pull_requests_count":2,"avg_time_to_close_issue":6038003.52631579,"avg_time_to_close_pull_request":9276115.5,"issues_closed_count":38,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":42,"avg_comments_per_issue":2.5535714285714284,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":17705489.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":2.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/issues","maintainers":[{"login":"jokergoo","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jokergoo"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rGREAT/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rGREAT/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rGREAT/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rGREAT/related_packages","maintainers":[{"uuid":"z.gu@dkfz.de","login":null,"name":"Zuguang Gu","email":"z.gu@dkfz.de","url":null,"packages_count":11,"html_url":null,"role":null,"created_at":"2023-11-25T13:20:39.763Z","updated_at":"2023-11-25T13:20:39.763Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/z.gu@dkfz.de/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403112,"full_name":"jokergoo/rGREAT","default_branch":"master","committers":[{"name":"Zuguang Gu","email":"jokergoo@gmail.com","login":"jokergoo","count":167},{"name":"Zuguang Gu","email":"z.gu@dkfz.de","login":"cola-recount2","count":32},{"name":"z.gu","email":"z.gu@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":17},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":9},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":"dtenenba","count":8},{"name":"Nick Semenkovich","email":"nick@semenkovich.com","login":"semenko","count":4},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":4},{"name":"andvon","email":"vonhandorfa@gmail.com","login":"andvon","count":3},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":3},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"d.tenenbaum","email":"d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":2},{"name":"Bioconductor Git-SVN Bridge","email":"bioc-sync@bioconductor.org","login":null,"count":2},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":"LiNk-NY","count":1},{"name":"s.arora","email":"s.arora@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1},{"name":"Sonali Arora","email":"sarora@fhcrc.org","login":"sonali-bioc","count":1}],"total_commits":272,"total_committers":17,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":16.0,"dds":0.38602941176470584,"past_year_committers":[{"name":"Zuguang Gu","email":"jokergoo@gmail.com","login":"jokergoo","count":4},{"name":"andvon","email":"vonhandorfa@gmail.com","login":"andvon","count":3},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":1}],"past_year_total_commits":8,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.6666666666666665,"past_year_dds":0.5,"last_synced_at":"2025-05-17T23:26:19.790Z","last_synced_commit":"176d0354f65773ec645eadbc47ac796af6fdd36b","created_at":"2023-10-25T13:05:24.456Z","updated_at":"2025-05-17T23:26:19.876Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"jokergoo/rGREAT","html_url":"https://github.com/jokergoo/rGREAT","last_synced_at":"2025-08-28T21:49:40.028Z","status":"error","issues_count":56,"pull_requests_count":2,"avg_time_to_close_issue":6038003.52631579,"avg_time_to_close_pull_request":9276115.5,"issues_closed_count":38,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":42,"avg_comments_per_issue":2.5535714285714284,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":17705489.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":2.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2024-05-01T20:01:50.178Z","updated_at":"2025-09-02T11:47:16.781Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jokergoo%2FrGREAT/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":45,"OWNER":6,"CONTRIBUTOR":4},"pull_request_author_associations_count":{"CONTRIBUTOR":2,"NONE":1},"issue_authors":{"jokergoo":6,"peranti":4,"semenko":4,"wbvguo":2,"dktanwar":2,"Pickledzebra":2,"ilibarra":1,"jiayiliujiayi":1,"dougbarrows":1,"Dragonlongzhilin":1,"dgodovich":1,"coolleen516":1,"zqzneptune":1,"ashishjain1988":1,"skpeterson":1,"yzhang12":1,"malonzm1":1,"andreaT87":1,"rjoana1":1,"jeremymsimon":1,"adamxmiranda":1,"imk1":1,"aseetharam":1,"asgeissler":1,"MafGal":1,"apblair":1,"NagaComBio":1,"acv21":1,"GGboy-Zzz":1,"alkurowska":1,"TerezaClarence":1,"emanuelavilla":1,"jk86754":1,"mooratov":1,"crazyhottommy":1,"biobug16":1,"dlukacso":1,"Z-H-Zhang":1,"CocoConstant":1,"andvon":1,"Brawni":1},"pull_request_authors":{"andvon":2,"semenko":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10094553,"issues_count":31373669,"pull_requests_count":97058592,"authors_count":10699554,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":3},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"dgodovich":1,"GGboy-Zzz":1,"skpeterson":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"jokergoo","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jokergoo"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":3,"WatchEvent":4,"IssueCommentEvent":2},"last_year":{"IssuesEvent":3,"WatchEvent":4,"IssueCommentEvent":2}},"keywords":[],"dependencies":null,"score":18.63064908206555,"created_at":"2025-09-08T10:44:25.156Z","updated_at":"2025-10-07T08:24:01.782Z","avatar_url":"https://github.com/jokergoo.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/bioinformatics/btac745"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-packages","bioconductor","proteomics","looking-for-maintainer","bioinformatics","mass-spectrometry","ncbi-geo","metabolomics","genomics","fluorescence"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61306","html_url":"https://science.ecosyste.ms/projects/61306"}