{"id":61307,"name":"TCGAbiolinks","description":"TCGAbiolinks","url":"https://github.com/bioinformaticsfmrp/tcgabiolinks","last_synced_at":"2025-09-08T12:29:25.262Z","repository":{"id":28049369,"uuid":"31545433","full_name":"BioinformaticsFMRP/TCGAbiolinks","owner":"BioinformaticsFMRP","description":"TCGAbiolinks","archived":false,"fork":false,"pushed_at":"2025-08-29T14:02:48.000Z","size":366423,"stargazers_count":331,"open_issues_count":268,"forks_count":120,"subscribers_count":23,"default_branch":"master","last_synced_at":"2025-09-08T11:28:39.717Z","etag":null,"topics":["bioc","bioconductor","gdc","integrative-analysis","r","tcga","tcga-data","tcgabiolinks"],"latest_commit_sha":null,"homepage":"http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioinformaticsFMRP.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-03-02T14:56:03.000Z","updated_at":"2025-08-29T14:02:53.000Z","dependencies_parsed_at":"2024-10-13T12:31:14.192Z","dependency_job_id":"f9a8a4bf-d4fd-474d-9614-7c33309c0d1b","html_url":"https://github.com/BioinformaticsFMRP/TCGAbiolinks","commit_stats":{"total_commits":26650,"total_committers":38,"mean_commits":701.3157894736842,"dds":"0.34341463414634144","last_synced_commit":"a4c3804dff8fc520436d49a440f9e22eebaa9735"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/BioinformaticsFMRP/TCGAbiolinks","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioinformaticsFMRP","download_url":"https://codeload.github.com/BioinformaticsFMRP/TCGAbiolinks/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274184854,"owners_count":25237267,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"BioinformaticsFMRP","name":"OMICs Bioinformatics Tools","uuid":"5509855","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/5509855?v=4","repositories_count":12,"last_synced_at":"2023-09-16T06:14:56.692Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BioinformaticsFMRP","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T05:07:01.511Z","updated_at":"2023-09-16T06:14:58.860Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioinformaticsFMRP","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioinformaticsFMRP/repositories"},"packages":[{"id":8420870,"name":"TCGAbiolinks","ecosystem":"bioconductor","description":"TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data","homepage":"https://github.com/BioinformaticsFMRP/TCGAbiolinks ","licenses":"GPL (\u003e= 3)","normalized_licenses":["CNRI-Python-GPL-Compatible"],"repository_url":"https://github.com/BioinformaticsFMRP/TCGAbiolinks","keywords_array":["DNAMethylation","DifferentialExpression","DifferentialMethylation","GeneExpression","GeneRegulation","MethylationArray","Network","Pathways","Sequencing","Software","Survival"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-12T15:05:09.895Z","latest_release_published_at":"2025-05-14T12:19:16.543Z","latest_release_number":"2.36.0","last_synced_at":"2025-09-08T11:46:13.561Z","created_at":"2023-10-12T15:05:09.396Z","updated_at":"2025-09-08T11:46:13.561Z","registry_url":"https://bioconductor.org/packages/TCGAbiolinks","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/TCGAbiolinks.pdf","metadata":{},"repo_metadata":{"id":28049369,"uuid":"31545433","full_name":"BioinformaticsFMRP/TCGAbiolinks","owner":"BioinformaticsFMRP","description":"TCGAbiolinks","archived":false,"fork":false,"pushed_at":"2025-06-20T13:26:51.000Z","size":366336,"stargazers_count":331,"open_issues_count":269,"forks_count":121,"subscribers_count":23,"default_branch":"master","last_synced_at":"2025-08-29T01:48:21.925Z","etag":null,"topics":["bioc","bioconductor","gdc","integrative-analysis","r","tcga","tcga-data","tcgabiolinks"],"latest_commit_sha":null,"homepage":"http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioinformaticsFMRP.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-03-02T14:56:03.000Z","updated_at":"2025-08-25T14:59:30.000Z","dependencies_parsed_at":"2024-10-13T12:31:14.192Z","dependency_job_id":"f9a8a4bf-d4fd-474d-9614-7c33309c0d1b","html_url":"https://github.com/BioinformaticsFMRP/TCGAbiolinks","commit_stats":{"total_commits":26650,"total_committers":38,"mean_commits":701.3157894736842,"dds":"0.34341463414634144","last_synced_commit":"a4c3804dff8fc520436d49a440f9e22eebaa9735"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/BioinformaticsFMRP/TCGAbiolinks","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioinformaticsFMRP","download_url":"https://codeload.github.com/BioinformaticsFMRP/TCGAbiolinks/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272630967,"owners_count":24967104,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-29T02:00:10.610Z","response_time":87,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"BioinformaticsFMRP","name":"OMICs Bioinformatics Tools","uuid":"5509855","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/5509855?v=4","repositories_count":12,"last_synced_at":"2023-09-16T06:14:56.692Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BioinformaticsFMRP","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T05:07:01.511Z","updated_at":"2023-09-16T06:14:58.860Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioinformaticsFMRP","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioinformaticsFMRP/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-29T04:52:43.592Z","dependent_packages_count":7,"downloads":489148,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":5.067264573991031,"dependent_repos_count":0.0,"dependent_packages_count":7.937219730941704,"stargazers_count":0.49327354260089684,"forks_count":0.13452914798206278,"docker_downloads_count":null,"average":2.726457399103139},"purl":"pkg:bioconductor/TCGAbiolinks","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/TCGAbiolinks","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/TCGAbiolinks","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/TCGAbiolinks/dependencies","status":null,"funding_links":[],"critical":false,"issue_metadata":{"last_synced_at":"2025-08-28T21:49:41.969Z","issues_count":186,"pull_requests_count":5,"avg_time_to_close_issue":9665655.676056338,"avg_time_to_close_pull_request":5391.0,"issues_closed_count":142,"pull_requests_closed_count":5,"pull_request_authors_count":3,"issue_authors_count":84,"avg_comments_per_issue":3.8763440860215055,"avg_comments_per_pull_request":1.6,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":11,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":10,"past_year_avg_comments_per_issue":3.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TCGAbiolinks/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TCGAbiolinks/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TCGAbiolinks/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TCGAbiolinks/related_packages","maintainers":[{"uuid":"tiagochst@gmail.com","login":null,"name":"Tiago Chedraoui Silva","email":"tiagochst@gmail.com","url":null,"packages_count":3,"html_url":null,"role":null,"created_at":"2023-10-12T15:16:25.607Z","updated_at":"2023-10-12T15:16:25.607Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/tiagochst@gmail.com/packages"},{"uuid":"axc1833@med.miami.edu","login":null,"name":"Antonio Colaprico","email":"axc1833@med.miami.edu","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-05T23:21:23.165Z","updated_at":"2023-11-05T23:21:23.165Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/axc1833@med.miami.edu/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403519,"full_name":"BioinformaticsFMRP/TCGAbiolinks","default_branch":"master","committers":[{"name":"tiagochst","email":"tiagochst@gmail.com","login":"tiagochst","count":19427},{"name":"Tiago Chedraoui Silva","email":"tiagochst[at]gmail.com","login":null,"count":3350},{"name":"torongs82","email":"antonio.colaprico@gmail.com","login":"torongs82","count":2721},{"name":"Simo Mounir","email":"mounir.mohamed92@gmail.com","login":"simomounir","count":222},{"name":"torongs82","email":"antoniocolaprico@Antonios-MacBook-Pro.local","login":null,"count":70},{"name":"torongs82","email":"antoniocolaprico@antonios-mbp.home","login":null,"count":70},{"name":"torongs82","email":"antoniocolaprico@antonios-mbp.cancer.dk","login":null,"count":70},{"name":"colsen","email":"colsen@ulb.ac.be","login":"colsen","count":64},{"name":"Melkiades","email":"dgarolini@gmail.com","login":"Melkiades","count":62},{"name":"Mohamed Mounir","email":"simomounir@Mohameds-MacBook-Pro.local","login":null,"count":54},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":54},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":54},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":48},{"name":"a.colaprico","email":"a.colaprico@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":44},{"name":"Tiago Silva","email":"tiagosilva@Tiagos-MacBook-Pro-2.local","login":null,"count":42},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":"dtenenba","count":36},{"name":"lucgar","email":"lucianogarofano88@gmail.com","login":"lucgar","count":36},{"name":"Yohann","email":"yohann.nedelec@gmail.com","login":"Melkaz","count":27},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":"LiNk-NY","count":27},{"name":"Xu Ren","email":"xu.ren@stonybrook.edu","login":null,"count":27},{"name":"Antonio Colaprico","email":"antonio.colaprico@ulb.ac.be","login":null,"count":26},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":24},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":24},{"name":"Dario Romagnoli","email":"dario.romagnoli87@gmail.com","login":"romagnolid","count":22},{"name":"Tiago Silva","email":"tiagosilva@Tiagos-MBP-2.hsd1.fl.comcast.net","login":null,"count":13},{"name":"Gioele Ciaparrone","email":"Juggernaut93","login":"Juggernaut93","count":12},{"name":"t.silva","email":"t.silva@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":11},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":10},{"name":"Tiago Silva","email":"tiago.silva@endpointhealth.com","login":null,"count":8},{"name":"Tiago Maié","email":"tiagomaie@hotmail.com","login":"tiagomaie","count":8},{"name":"tiagochst","email":"tiagochst@localhost.localdomain","login":null,"count":6},{"name":"Paranoia","email":"culopelo@hotmail.it","login":null,"count":6},{"name":"Tiago Silva","email":"tiagosilva@Tiagos-MBP-2.centurylink.net","login":null,"count":5},{"name":"yuejiang","email":"rivehill@gmail.com","login":"Yue-Jiang","count":4},{"name":"j.hester","email":"j.hester@bc3139a8-67e5-0310-9ffc-ced21a209358","login":"jimhester","count":3},{"name":"James Hester","email":"jhester@fredhutch.org","login":null,"count":2},{"name":"Fabian Janosch Krüger","email":"101988719+fabianjkrueger","login":"fabianjkrueger","count":1}],"total_commits":26690,"total_committers":37,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":721.3513513513514,"dds":0.272124391157737,"past_year_committers":[{"name":"Chedraoui Silva","email":"tiagochst@gmail.com","login":"tiagochst","count":9},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":2}],"past_year_total_commits":11,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":5.5,"past_year_dds":0.18181818181818177,"last_synced_at":"2025-05-28T13:46:25.156Z","last_synced_commit":"0d92403bfe71e264f17add77600b696f1046580a","created_at":"2023-10-25T13:16:14.927Z","updated_at":"2025-05-28T13:46:25.167Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"BioinformaticsFMRP/TCGAbiolinks","html_url":"https://github.com/BioinformaticsFMRP/TCGAbiolinks","last_synced_at":"2025-08-31T08:10:31.161Z","status":null,"issues_count":112,"pull_requests_count":5,"avg_time_to_close_issue":8557643.759036144,"avg_time_to_close_pull_request":6748858.2,"issues_closed_count":83,"pull_requests_closed_count":5,"pull_request_authors_count":5,"issue_authors_count":86,"avg_comments_per_issue":3.357142857142857,"avg_comments_per_pull_request":1.2,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":12,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":58117.0,"past_year_avg_time_to_close_pull_request":330962.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":12,"past_year_avg_comments_per_issue":0.08333333333333333,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2025-01-24T05:12:02.538Z","updated_at":"2025-09-03T06:00:27.722Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAbiolinks/issues","issue_labels_count":{"bug":14,"help wanted":14,"question":10,"enhancement":6},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":127,"CONTRIBUTOR":4},"pull_request_author_associations_count":{"NONE":5,"CONTRIBUTOR":2},"issue_authors":{"cloudred20":3,"bigwiz83":3,"xiatingp":3,"DarioS":3,"needleworm":3,"AndreVidas":3,"cstubben":3,"chen1111111":3,"Melkiades":2,"SonicHedgehogSHH":2,"hongenxu":2,"mattiasaine":2,"RunDevilRun":2,"IvanEllson":2,"kvougas":2,"martalovino":2,"Jasonmbg":2,"sigven":2,"isglobal-brge":2,"xiexiaowei":2,"rg-code":1,"AndriesDeKoker":1,"ramyapurkanti":1,"simomounir":1,"DijkJel":1,"fw1121":1,"raygozag":1,"yesitsjess":1,"dario-gaston":1,"Ci-TJ":1,"BioinfoMug":1,"ustcahwry":1,"nitishkumarmishra":1,"breddy17":1,"hnsc-a11y":1,"AswathyPaul":1,"y1zhou":1,"lixinjunhe":1,"Mincana-Huang":1,"LULUCHIU":1,"ayueme":1,"sahilseth":1,"YEBADI":1,"dBenedek":1,"haripazhayath":1,"ZHANGQiaosheng":1,"SabarinathChandrasekharan":1,"xiaofengyyy":1,"Benfeitas":1,"mbk0asis":1,"ReginaRyan":1,"gaiusjaugustus":1,"Vanhesling":1,"EdMroz":1,"mdozmorov":1,"hberkayc":1,"ikramu":1,"BarryWang0905":1,"maronem":1,"ptranvan":1,"YangZX88":1,"jw156605":1,"TilmanVoss":1,"huwenhuo":1,"tiagochst":1,"xiaojuhu":1,"CN-Geminghui":1,"DanielJMullen":1,"rolfhaut":1,"rmvr25":1,"kkleinoros":1,"hibarikyouya":1,"igordot":1,"wgmao":1,"zayni":1,"paridhichoudhary":1,"dasiav7":1,"4479917":1,"rbentham":1,"MarcinKosinski":1,"mr-c":1,"hdf87ery":1,"Falancios":1,"jonathanronen":1,"mjslifker":1,"pamelarussell":1,"PanSX-Dr":1,"ghost":1,"meicaljohnjones":1,"shaniAmare":1,"danielgerlach":1,"JessieLIII":1,"olgabogi":1,"akauko":1,"JRLi":1,"Wanvdphelys":1,"jiajiayb":1,"wenching":1,"Dr-Priyanka-Jain":1,"sjroth":1,"komalsrathi":1,"JuliusDeynet":1,"zhihuawang2015":1},"pull_request_authors":{"Juggernaut93":1,"NolanBentley":1,"Melkiades":1,"warbol":1,"MarcinKosinski":1,"Lancelof2019":1,"fabianjkrueger":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10070570,"issues_count":31249392,"pull_requests_count":95413405,"authors_count":10689192,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":15},"past_year_pull_request_author_associations_count":{"NONE":1},"past_year_issue_authors":{"Ci-TJ":1,"cstubben":1,"DanielJMullen":1,"Dr-Priyanka-Jain":1,"hberkayc":1,"hnsc-a11y":1,"mr-c":1,"PanSX-Dr":1,"ptranvan":1,"ramyapurkanti":1,"raygozag":1,"rmvr25":1,"shaniAmare":1,"sigven":1,"xiaofengyyy":1},"past_year_pull_request_authors":{"NolanBentley":1},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":14,"WatchEvent":29,"IssueCommentEvent":51,"PushEvent":10,"PullRequestEvent":3,"ForkEvent":10},"last_year":{"IssuesEvent":14,"WatchEvent":29,"IssueCommentEvent":51,"PushEvent":10,"PullRequestEvent":3,"ForkEvent":10}},"keywords":["bioc","bioconductor","gdc","integrative-analysis","r","tcga","tcga-data","tcgabiolinks"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2024-10-13T12:31:08.605Z","updated_at":"2024-10-13T12:31:08.605Z","repository_link":"https://github.com/BioinformaticsFMRP/TCGAbiolinks/blob/master/DESCRIPTION","dependencies":[{"id":20209934155,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0","direct":true,"kind":"depends","optional":false},{"id":20209934156,"package_name":"downloader","ecosystem":"cran","requirements":"\u003e= 0.4","direct":true,"kind":"imports","optional":false},{"id":20209934157,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934158,"package_name":"biomaRt","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934159,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934160,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934161,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934162,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934163,"package_name":"XML","ecosystem":"cran","requirements":"\u003e= 3.98.0","direct":true,"kind":"imports","optional":false},{"id":20209934164,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934165,"package_name":"jsonlite","ecosystem":"cran","requirements":"\u003e= 1.0.0","direct":true,"kind":"imports","optional":false},{"id":20209934166,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934167,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934168,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934169,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934170,"package_name":"stringr","ecosystem":"cran","requirements":"\u003e= 1.0.0","direct":true,"kind":"imports","optional":false},{"id":20209934171,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934172,"package_name":"rvest","ecosystem":"cran","requirements":"\u003e= 0.3.0","direct":true,"kind":"imports","optional":false},{"id":20209934173,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934174,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934175,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934176,"package_name":"R.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934177,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"\u003e= 1.4.0","direct":true,"kind":"imports","optional":false},{"id":20209934178,"package_name":"TCGAbiolinksGUI.data","ecosystem":"cran","requirements":" ","direct":true,"kind":"imports","optional":false},{"id":20209934179,"package_name":"readr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934180,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934181,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934182,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934183,"package_name":"xml2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":20209934184,"package_name":"httr","ecosystem":"cran","requirements":"\u003e= 1.2.1","direct":true,"kind":"imports","optional":false},{"id":20209934185,"package_name":"jpeg","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934186,"package_name":"png","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934187,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934188,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934189,"package_name":"devtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934190,"package_name":"maftools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934191,"package_name":"parmigene","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934192,"package_name":"c3net","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934193,"package_name":"minet","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934194,"package_name":"dnet","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934195,"package_name":"Biobase","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934196,"package_name":"affy","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934197,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934198,"package_name":"sesame","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934199,"package_name":"AnnotationHub","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934200,"package_name":"ExperimentHub","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934201,"package_name":"pathview","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934202,"package_name":"clusterProfiler","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934203,"package_name":"Seurat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934204,"package_name":"ComplexHeatmap","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934205,"package_name":"circlize","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934206,"package_name":"ConsensusClusterPlus","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934207,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934208,"package_name":"supraHex","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934209,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934210,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934211,"package_name":"sva","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934212,"package_name":"EDASeq","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934213,"package_name":"survminer","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934214,"package_name":"genefilter","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934215,"package_name":"gridExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934216,"package_name":"survival","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934217,"package_name":"doParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934218,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934219,"package_name":"ggrepel","ecosystem":"cran","requirements":"\u003e= 0.6.3","direct":true,"kind":"suggests","optional":false},{"id":20209934220,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934221,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":20209934222,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":23.106618291081542,"created_at":"2025-09-08T10:44:25.158Z","updated_at":"2025-10-07T08:24:01.808Z","avatar_url":"https://github.com/BioinformaticsFMRP.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.12688/f1000research.8923.2","http://dx.doi.org/10.1093/nar/gkv1507","https://doi.org/10.1093/bioinformatics/bty902"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","fluorescence","microscopy","particles","tracking","gene","tumor-purity","pathway-analysis","genomics","mirror"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61307","html_url":"https://science.ecosyste.ms/projects/61307"}