{"id":61344,"name":"SEraster","description":"Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis","url":"https://github.com/jefworks-lab/seraster","last_synced_at":"2025-09-08T12:29:20.337Z","repository":{"id":218110545,"uuid":"682123112","full_name":"JEFworks-Lab/SEraster","owner":"JEFworks-Lab","description":"Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis","archived":false,"fork":false,"pushed_at":"2025-04-23T01:53:26.000Z","size":45978,"stargazers_count":18,"open_issues_count":1,"forks_count":5,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-08-31T18:57:13.775Z","etag":null,"topics":["rstats","spatial-analysis","spatial-data-analysis","spatial-omics","spatial-transcriptomics"],"latest_commit_sha":null,"homepage":"https://jef.works/SEraster/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JEFworks-Lab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-08-23T13:45:37.000Z","updated_at":"2025-08-05T22:53:53.000Z","dependencies_parsed_at":"2024-02-20T20:45:22.490Z","dependency_job_id":"f7c70099-9e3a-49cf-ace9-1d8692f213d4","html_url":"https://github.com/JEFworks-Lab/SEraster","commit_stats":{"total_commits":50,"total_committers":4,"mean_commits":12.5,"dds":0.28,"last_synced_commit":"676af113625a441d9f0dc524faed0a474ea193b7"},"previous_names":["jefworks-lab/seraster"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/JEFworks-Lab/SEraster","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JEFworks-Lab","download_url":"https://codeload.github.com/JEFworks-Lab/SEraster/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274184900,"owners_count":25237276,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"JEFworks-Lab","name":"JEFworks Lab","uuid":"68028140","kind":"organization","description":"JEFworks Lab at Johns Hopkins University","email":null,"website":"http://jef.works/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/68028140?v=4","repositories_count":9,"last_synced_at":"2023-02-28T21:35:22.531Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JEFworks-Lab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-11T22:34:36.976Z","updated_at":"2023-02-28T21:35:22.536Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JEFworks-Lab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JEFworks-Lab/repositories"},"packages":[{"id":11559199,"name":"SEraster","ecosystem":"bioconductor","description":"Rasterization Preprocessing Framework for Scalable Spatial Omics Data Analysis","homepage":"https://github.com/JEFworks-Lab/SEraster ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/JEFworks-Lab/SEraster","keywords_array":["GeneExpression","Preprocessing","SingleCell","Software","Spatial","Transcriptomics"],"namespace":null,"versions_count":1,"first_release_published_at":"2025-04-17T10:34:59.784Z","latest_release_published_at":"2025-04-17T10:34:59.784Z","latest_release_number":"1.0.0","last_synced_at":"2025-08-31T18:03:06.247Z","created_at":"2025-04-17T10:34:58.467Z","updated_at":"2025-08-31T19:45:20.062Z","registry_url":"https://bioconductor.org/packages/SEraster","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/SEraster/inst/doc/SEraster.pdf","metadata":{},"repo_metadata":{"id":218110545,"uuid":"682123112","full_name":"JEFworks-Lab/SEraster","owner":"JEFworks-Lab","description":"Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis","archived":false,"fork":false,"pushed_at":"2025-04-23T01:53:26.000Z","size":45978,"stargazers_count":18,"open_issues_count":1,"forks_count":5,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-07-28T19:06:05.626Z","etag":null,"topics":["rstats","spatial-analysis","spatial-data-analysis","spatial-omics","spatial-transcriptomics"],"latest_commit_sha":null,"homepage":"https://jef.works/SEraster/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JEFworks-Lab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-08-23T13:45:37.000Z","updated_at":"2025-07-02T17:46:45.000Z","dependencies_parsed_at":"2024-02-20T20:45:22.490Z","dependency_job_id":"f7c70099-9e3a-49cf-ace9-1d8692f213d4","html_url":"https://github.com/JEFworks-Lab/SEraster","commit_stats":{"total_commits":50,"total_committers":4,"mean_commits":12.5,"dds":0.28,"last_synced_commit":"676af113625a441d9f0dc524faed0a474ea193b7"},"previous_names":["jefworks-lab/seraster"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/JEFworks-Lab/SEraster","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JEFworks-Lab","download_url":"https://codeload.github.com/JEFworks-Lab/SEraster/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JEFworks-Lab%2FSEraster/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273025803,"owners_count":25032838,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-31T02:00:09.071Z","response_time":79,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"JEFworks-Lab","name":"JEFworks Lab","uuid":"68028140","kind":"organization","description":"JEFworks Lab at Johns Hopkins University","email":null,"website":"http://jef.works/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/68028140?v=4","repositories_count":9,"last_synced_at":"2023-02-28T21:35:22.531Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JEFworks-Lab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-11T22:34:36.976Z","updated_at":"2023-02-28T21:35:22.536Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JEFworks-Lab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JEFworks-Lab/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-31T19:45:20.062Z","dependent_packages_count":0,"downloads":1407,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":93.65269461077844,"dependent_repos_count":0.0,"dependent_packages_count":30.29940119760479,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":41.31736526946108},"purl":"pkg:bioconductor/SEraster","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/SEraster","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/SEraster","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/SEraster/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T11:09:37.622Z","issues_count":1,"pull_requests_count":12,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":25775.416666666668,"issues_closed_count":0,"pull_requests_closed_count":12,"pull_request_authors_count":3,"issue_authors_count":1,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":12,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":307.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jefworks-lab%2Fseraster/issues","maintainers":[{"login":"GohtaAihara","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/GohtaAihara"},{"login":"mayling54","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mayling54"}],"active_maintainers":[{"login":"GohtaAihara","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/GohtaAihara"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SEraster/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SEraster/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SEraster/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SEraster/related_packages","maintainers":[{"uuid":"gohta.aihara@gmail.com","login":null,"name":"Gohta Aihara","email":"gohta.aihara@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2025-04-17T10:35:47.013Z","updated_at":"2025-04-17T10:35:47.013Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/gohta.aihara@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1468705,"full_name":"jefworks-lab/seraster","default_branch":"main","committers":[{"name":"Gohta Aihara","email":"gohta.aihara@gmail.com","login":null,"count":36},{"name":"JEFworks","email":"jeanfan@jhu.edu","login":null,"count":8},{"name":"GohtaAihara","email":"32276077+GohtaAihara","login":"GohtaAihara","count":4},{"name":"LylaAtta123","email":"lylaatta@Lylas-MacBook-Pro-2.local","login":null,"count":2}],"total_commits":50,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":12.5,"dds":0.28,"past_year_committers":[{"name":"Gohta Aihara","email":"gohta.aihara@gmail.com","login":null,"count":36},{"name":"JEFworks","email":"jeanfan@jhu.edu","login":null,"count":8},{"name":"GohtaAihara","email":"32276077+GohtaAihara","login":"GohtaAihara","count":4},{"name":"LylaAtta123","email":"lylaatta@Lylas-MacBook-Pro-2.local","login":null,"count":2}],"past_year_total_commits":50,"past_year_total_committers":4,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":12.5,"past_year_dds":0.28,"last_synced_at":"2024-01-28T00:16:12.457Z","last_synced_commit":"676af113625a441d9f0dc524faed0a474ea193b7","created_at":"2024-01-28T00:15:45.250Z","updated_at":"2024-01-28T00:16:12.458Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/jefworks-lab%2Fseraster/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"jefworks-lab/seraster","html_url":"https://github.com/jefworks-lab/seraster","last_synced_at":"2025-08-31T11:09:37.622Z","status":null,"issues_count":1,"pull_requests_count":12,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":25775.416666666668,"issues_closed_count":0,"pull_requests_closed_count":12,"pull_request_authors_count":3,"issue_authors_count":1,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":12,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":307.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"created_at":"2024-01-28T00:15:45.770Z","updated_at":"2025-09-01T17:32:39.775Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jefworks-lab%2Fseraster","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jefworks-lab%2Fseraster/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{"COLLABORATOR":18,"NONE":3},"issue_authors":{"lambdamoses":1},"pull_request_authors":{"GohtaAihara":16,"LylaAtta123":3,"mayling54":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10165784,"issues_count":31999265,"pull_requests_count":100269215,"authors_count":10729006,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"COLLABORATOR":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"GohtaAihara":1},"maintainers":[{"login":"GohtaAihara","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/GohtaAihara"},{"login":"mayling54","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mayling54"}],"active_maintainers":[{"login":"GohtaAihara","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/GohtaAihara"}]},"events":{"total":{"WatchEvent":2,"PushEvent":8,"PullRequestEvent":2,"ForkEvent":1},"last_year":{"WatchEvent":2,"PushEvent":8,"PullRequestEvent":2,"ForkEvent":1}},"keywords":["rstats","spatial-analysis","spatial-data-analysis","spatial-omics","spatial-transcriptomics"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2024-01-22T22:53:43.380Z","updated_at":"2024-01-22T22:53:43.380Z","repository_link":"https://github.com/JEFworks-Lab/SEraster/blob/main/DESCRIPTION","dependencies":[{"id":15767049318,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 2.10","direct":true,"kind":"depends","optional":false},{"id":15767049319,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false}]}],"score":11.580658877004318,"created_at":"2025-09-08T10:44:39.488Z","updated_at":"2025-10-07T08:24:02.481Z","avatar_url":"https://github.com/JEFworks-Lab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/bioinformatics/btae412"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/61344","html_url":"https://science.ecosyste.ms/projects/61344"}