{"id":61347,"name":"msqrob2","description":"Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure","url":"https://github.com/statomics/msqrob2","last_synced_at":"2025-09-08T12:29:25.867Z","repository":{"id":47031602,"uuid":"227475103","full_name":"statOmics/msqrob2","owner":"statOmics","description":"Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure","archived":false,"fork":false,"pushed_at":"2025-06-30T15:43:02.000Z","size":183617,"stargazers_count":12,"open_issues_count":26,"forks_count":12,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-06-30T16:27:39.525Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/statOmics.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-12-11T22:50:01.000Z","updated_at":"2025-06-30T15:43:06.000Z","dependencies_parsed_at":"2024-12-20T14:42:15.827Z","dependency_job_id":"3407ea2f-bfbf-4c49-9d99-362057f0b50b","html_url":"https://github.com/statOmics/msqrob2","commit_stats":{"total_commits":144,"total_committers":11,"mean_commits":"13.090909090909092","dds":0.5416666666666667,"last_synced_commit":"308c1fd21c2634abbb685a05a126e64f667734c8"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/statOmics/msqrob2","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statOmics","download_url":"https://codeload.github.com/statOmics/msqrob2/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274184908,"owners_count":25237278,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"statOmics","name":"statOmics","uuid":"24431387","kind":"organization","description":"","email":null,"website":"https://statomics.github.io","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/24431387?v=4","repositories_count":33,"last_synced_at":"2023-03-05T17:57:23.860Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/statOmics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T20:23:11.124Z","updated_at":"2023-03-05T17:57:23.911Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statOmics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statOmics/repositories"},"packages":[{"id":8420016,"name":"msqrob2","ecosystem":"bioconductor","description":"Robust statistical inference for quantitative LC-MS proteomics","homepage":"https://github.com/statOmics/msqrob2 ","licenses":"Artistic-2.0","normalized_licenses":["Artistic-2.0"],"repository_url":"https://github.com/statOmics/msqrob2","keywords_array":["DifferentialExpression","ExperimentalDesign","ImmunoOncology","MassSpectrometry","MultipleComparison","Normalization","Preprocessing","Proteomics","Regression","Software","TimeCourse"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T14:47:21.099Z","latest_release_published_at":"2025-04-27T02:19:28.230Z","latest_release_number":"1.16.0","last_synced_at":"2025-08-01T09:47:29.180Z","created_at":"2023-10-12T14:47:20.940Z","updated_at":"2025-08-01T09:47:29.181Z","registry_url":"https://bioconductor.org/packages/msqrob2","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/msqrob2/inst/doc/msqrob2.pdf","metadata":{},"repo_metadata":{"id":47031602,"uuid":"227475103","full_name":"statOmics/msqrob2","owner":"statOmics","description":"Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure","archived":false,"fork":false,"pushed_at":"2024-05-13T09:18:58.000Z","size":183604,"stargazers_count":7,"open_issues_count":21,"forks_count":9,"subscribers_count":5,"default_branch":"master","last_synced_at":"2024-08-18T00:20:01.403Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/statOmics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-12-11T22:50:01.000Z","updated_at":"2024-07-09T02:16:15.000Z","dependencies_parsed_at":"2024-05-13T10:48:54.329Z","dependency_job_id":null,"html_url":"https://github.com/statOmics/msqrob2","commit_stats":{"total_commits":144,"total_committers":11,"mean_commits":"13.090909090909092","dds":0.5416666666666667,"last_synced_commit":"308c1fd21c2634abbb685a05a126e64f667734c8"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statOmics","download_url":"https://codeload.github.com/statOmics/msqrob2/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":219761806,"owners_count":16539314,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"statOmics","name":"statOmics","uuid":"24431387","kind":"organization","description":"","email":null,"website":"https://statomics.github.io","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/24431387?v=4","repositories_count":33,"last_synced_at":"2023-03-05T17:57:23.860Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/statOmics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T20:23:11.124Z","updated_at":"2023-03-05T17:57:23.911Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statOmics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statOmics/repositories"},"tags":[]},"repo_metadata_updated_at":"2024-09-18T03:49:05.248Z","dependent_packages_count":0,"downloads":11052,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":77.90697674418605,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":21.755725190839694,"forks_count":6.8215892053973,"docker_downloads_count":null,"average":21.29685822808461},"purl":"pkg:bioconductor/msqrob2","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/msqrob2","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/msqrob2","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/msqrob2/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2024-08-18T00:19:59.452Z","issues_count":36,"pull_requests_count":26,"avg_time_to_close_issue":1931867.4705882352,"avg_time_to_close_pull_request":2808895.875,"issues_closed_count":17,"pull_requests_closed_count":24,"pull_request_authors_count":5,"issue_authors_count":18,"avg_comments_per_issue":2.4166666666666665,"avg_comments_per_pull_request":0.6923076923076923,"merged_pull_requests_count":22,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":5,"past_year_pull_requests_count":6,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":21016.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":4,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.2,"past_year_avg_comments_per_pull_request":0.5,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":4,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/issues","maintainers":[{"login":"ococrook","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ococrook"},{"login":"StijnVandenbulcke","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/StijnVandenbulcke"},{"login":"lgatto","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lgatto"},{"login":"statOmics","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/statOmics"}],"active_maintainers":[{"login":"StijnVandenbulcke","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/StijnVandenbulcke"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/msqrob2/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/msqrob2/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/msqrob2/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/msqrob2/related_packages","maintainers":[{"uuid":"lieven.clement@ugent.be","login":null,"name":"Lieven Clement","email":"lieven.clement@ugent.be","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-25T13:22:14.673Z","updated_at":"2023-11-25T13:22:14.673Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/lieven.clement@ugent.be/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403308,"full_name":"statOmics/msqrob2","default_branch":"master","committers":[{"name":"statOmics","email":"lieven.clement@ugent.be","login":null,"count":66},{"name":"Milan Malfait","email":"milan.malfait94@gmail.com","login":null,"count":20},{"name":"Oliver M. Crook","email":"ococrook@gmail.com","login":null,"count":19},{"name":"StijnVandenbulcke","email":"vandenbulcke.stijn@gmail.com","login":null,"count":15},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":6},{"name":"Lieven Clement","email":"lieven.clement@gmail.com","login":null,"count":5},{"name":"Laurent Gatto","email":"laurent.gatto@uclouvain.be","login":null,"count":5},{"name":"StijnVandenbulcke","email":"57996469+StijnVandenbulcke","login":"StijnVandenbulcke","count":4},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"cvanderaa","email":"43441105+cvanderaa","login":"cvanderaa","count":1},{"name":"Laurent Gatto","email":"laurent.gatto@gmail.com","login":null,"count":1}],"total_commits":144,"total_committers":11,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":13.090909090909092,"dds":0.5416666666666667,"past_year_committers":[{"name":"StijnVandenbulcke","email":"vandenbulcke.stijn@gmail.com","login":null,"count":10},{"name":"StijnVandenbulcke","email":"57996469+StijnVandenbulcke","login":"StijnVandenbulcke","count":3},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"past_year_total_commits":15,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":5.0,"past_year_dds":0.33333333333333337,"last_synced_at":"2023-10-25T13:17:15.490Z","last_synced_commit":"308c1fd21c2634abbb685a05a126e64f667734c8","created_at":"2023-10-25T13:16:01.048Z","updated_at":"2023-10-25T13:17:15.490Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"statOmics/msqrob2","html_url":"https://github.com/statOmics/msqrob2","last_synced_at":"2024-09-18T03:49:05.546Z","status":null,"issues_count":37,"pull_requests_count":27,"avg_time_to_close_issue":1931867.4705882352,"avg_time_to_close_pull_request":2724477.24,"issues_closed_count":17,"pull_requests_closed_count":25,"pull_request_authors_count":6,"issue_authors_count":19,"avg_comments_per_issue":2.4054054054054053,"avg_comments_per_pull_request":0.8148148148148148,"merged_pull_requests_count":23,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":5,"past_year_pull_requests_count":7,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":156498.8,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":5,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.6,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":5,"created_at":"2024-08-17T00:12:22.001Z","updated_at":"2025-09-03T04:58:16.726Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/statOmics%2Fmsqrob2/issues","issue_labels_count":{"duplicate":1,"documentation":1,"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":18,"COLLABORATOR":17,"CONTRIBUTOR":3},"pull_request_author_associations_count":{"COLLABORATOR":23,"CONTRIBUTOR":8,"NONE":2},"issue_authors":{"ococrook":8,"statOmics":5,"lgatto":4,"PB-Shinde":2,"cvanderaa":2,"EmilieCarneiro":2,"JobbeG":2,"Aintzane99":1,"Douerww":1,"Mengbo-Li":1,"milanmlft":1,"mbonhomme":1,"DrSAUD":1,"Apirog9":1,"yafeng":1,"cdlawless":1,"leopoldguyot":1,"abadgerw":1,"patruong":1,"mchiapello":1},"pull_request_authors":{"StijnVandenbulcke":14,"ococrook":8,"milanmlft":5,"cvanderaa":3,"leopoldguyot":2,"lgatto":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10165784,"issues_count":31999265,"pull_requests_count":100269215,"authors_count":10729006,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":1},"past_year_issue_authors":{"abadgerw":1},"past_year_pull_request_authors":{"StijnVandenbulcke":1},"maintainers":[{"login":"ococrook","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ococrook"},{"login":"StijnVandenbulcke","count":14,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/StijnVandenbulcke"},{"login":"statOmics","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/statOmics"},{"login":"lgatto","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lgatto"}],"active_maintainers":[{"login":"StijnVandenbulcke","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/StijnVandenbulcke"}]},"events":{"total":{"IssuesEvent":1,"WatchEvent":3,"IssueCommentEvent":5,"PushEvent":8,"PullRequestReviewEvent":8,"PullRequestReviewCommentEvent":4,"PullRequestEvent":3,"ForkEvent":2,"CreateEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":3,"IssueCommentEvent":5,"PushEvent":8,"PullRequestReviewEvent":8,"PullRequestReviewCommentEvent":4,"PullRequestEvent":3,"ForkEvent":2,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-26T10:50:55.037Z","updated_at":"2022-08-26T10:50:55.037Z","repository_link":"https://github.com/statOmics/msqrob2/blob/master/DESCRIPTION","dependencies":[{"id":2811522814,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.1","direct":true,"kind":"depends","optional":false},{"id":2811522815,"package_name":"QFeatures","ecosystem":"cran","requirements":"\u003e= 1.1.2","direct":true,"kind":"depends","optional":false},{"id":2811522816,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522817,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522818,"package_name":"lme4","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522819,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522820,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522821,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522822,"package_name":"MASS","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522823,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522824,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522825,"package_name":"codetools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":2811522826,"package_name":"multcomp","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522827,"package_name":"gridExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522828,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522829,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522830,"package_name":"RefManageR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522831,"package_name":"sessioninfo","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522832,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522833,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522834,"package_name":"tidyverse","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522835,"package_name":"plotly","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522836,"package_name":"msdata","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522837,"package_name":"MSnbase","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522838,"package_name":"matrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2811522839,"package_name":"MsCoreUtils","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/check-bioc.yml","sha":null,"kind":"manifest","created_at":"2023-01-20T10:03:46.279Z","updated_at":"2023-01-20T10:03:46.279Z","repository_link":"https://github.com/statOmics/msqrob2/blob/master/.github/workflows/check-bioc.yml","dependencies":[{"id":7059504332,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7059504333,"package_name":"grimbough/bioc-actions/setup-bioc","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7059504334,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7059504335,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7059504336,"package_name":"grimbough/bioc-actions/build-install-check","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7059504337,"package_name":"grimbough/bioc-actions/run-BiocCheck","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7059504338,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-coverage.yaml","sha":null,"kind":"manifest","created_at":"2023-01-20T10:03:46.313Z","updated_at":"2023-01-20T10:03:46.313Z","repository_link":"https://github.com/statOmics/msqrob2/blob/master/.github/workflows/test-coverage.yaml","dependencies":[{"id":7059504351,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7059504352,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7059504353,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":15.345938595835712,"created_at":"2025-09-08T10:44:39.498Z","updated_at":"2025-10-07T08:24:02.541Z","avatar_url":"https://github.com/statOmics.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor","bioconductor-package","software","single-cell","proteomics","mass-spectrometry","proteomexchange","ontology","metabolomics","gene"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61347","html_url":"https://science.ecosyste.ms/projects/61347"}