{"id":61368,"name":"rhdf5filters","description":"Distributing additional HDF5 compression filters as an R package.  Intended to be used with rhdf5, however the compiled filters can also be used with external applications.","url":"https://github.com/huber-group-embl/rhdf5filters","last_synced_at":"2025-09-08T12:29:34.008Z","repository":{"id":41059803,"uuid":"119556978","full_name":"Huber-group-EMBL/rhdf5filters","owner":"Huber-group-EMBL","description":"Distributing additional HDF5 compression filters as an R package.  Intended to be used with rhdf5, however the compiled filters can also be used with external applications.","archived":false,"fork":false,"pushed_at":"2025-03-24T15:11:23.000Z","size":7252,"stargazers_count":5,"open_issues_count":2,"forks_count":6,"subscribers_count":0,"default_branch":"devel","last_synced_at":"2025-08-24T06:07:01.751Z","etag":null,"topics":["compression","filter-plugin","hdf5","rpackage"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/rhdf5filters/","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Huber-group-EMBL.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-01-30T15:43:06.000Z","updated_at":"2025-03-24T15:11:27.000Z","dependencies_parsed_at":"2022-08-28T23:31:39.755Z","dependency_job_id":"215181ee-671a-4f26-a81d-c8776047afc2","html_url":"https://github.com/Huber-group-EMBL/rhdf5filters","commit_stats":{"total_commits":269,"total_committers":4,"mean_commits":67.25,"dds":"0.059479553903345694","last_synced_commit":"4e5b59360c2bf33201dfba1a6f75fb6e39c29627"},"previous_names":["huber-group-embl/rhdf5filters","grimbough/rhdf5filters"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/Huber-group-EMBL/rhdf5filters","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Huber-group-EMBL","download_url":"https://codeload.github.com/Huber-group-EMBL/rhdf5filters/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274184962,"owners_count":25237289,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Huber-group-EMBL","name":"EMBL Huber Group","uuid":"57364287","kind":"organization","description":"Repository for joint projects by members and ex-members of the Huber group at EMBL. Please see also individuals' pages for further repositories.","email":null,"website":"www.huber.embl.de","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/57364287?v=4","repositories_count":4,"last_synced_at":"2023-03-06T20:11:42.969Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Huber-group-EMBL","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T21:00:15.854Z","updated_at":"2023-03-06T20:11:42.998Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Huber-group-EMBL","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Huber-group-EMBL/repositories"},"packages":[{"id":8420504,"name":"rhdf5filters","ecosystem":"bioconductor","description":"HDF5 Compression Filters","homepage":"https://github.com/Huber-group-EMBL/rhdf5filters ","licenses":"BSD_2_clause + file LICENSE","normalized_licenses":["BSD-1-Clause"],"repository_url":"https://github.com/Huber-group-EMBL/rhdf5filters","keywords_array":["DataImport","Infrastructure","Software"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-12T14:56:04.979Z","latest_release_published_at":"2025-05-02T10:46:49.770Z","latest_release_number":"1.20.0","last_synced_at":"2025-08-24T00:46:11.143Z","created_at":"2023-10-12T14:56:04.729Z","updated_at":"2025-08-24T12:57:39.162Z","registry_url":"https://bioconductor.org/packages/rhdf5filters","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/rhdf5filters/inst/doc/rhdf5filters.pdf","metadata":{},"repo_metadata":{"id":41059803,"uuid":"119556978","full_name":"Huber-group-EMBL/rhdf5filters","owner":"Huber-group-EMBL","description":"Distributing additional HDF5 compression filters as an R package.  Intended to be used with rhdf5, however the compiled filters can also be used with external applications.","archived":false,"fork":false,"pushed_at":"2025-03-24T15:11:23.000Z","size":7252,"stargazers_count":5,"open_issues_count":2,"forks_count":6,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-07-03T10:41:11.573Z","etag":null,"topics":["compression","filter-plugin","hdf5","rpackage"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/rhdf5filters/","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Huber-group-EMBL.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-01-30T15:43:06.000Z","updated_at":"2025-03-24T15:11:27.000Z","dependencies_parsed_at":"2022-08-28T23:31:39.755Z","dependency_job_id":"215181ee-671a-4f26-a81d-c8776047afc2","html_url":"https://github.com/Huber-group-EMBL/rhdf5filters","commit_stats":{"total_commits":269,"total_committers":4,"mean_commits":67.25,"dds":"0.059479553903345694","last_synced_commit":"4e5b59360c2bf33201dfba1a6f75fb6e39c29627"},"previous_names":["huber-group-embl/rhdf5filters","grimbough/rhdf5filters"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/Huber-group-EMBL/rhdf5filters","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Huber-group-EMBL","download_url":"https://codeload.github.com/Huber-group-EMBL/rhdf5filters/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271778343,"owners_count":24819273,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-23T02:00:09.327Z","response_time":69,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"Huber-group-EMBL","name":"EMBL Huber Group","uuid":"57364287","kind":"organization","description":"Repository for joint projects by members and ex-members of the Huber group at EMBL. Please see also individuals' pages for further repositories.","email":null,"website":"www.huber.embl.de","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/57364287?v=4","repositories_count":4,"last_synced_at":"2023-03-06T20:11:42.969Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Huber-group-EMBL","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T21:00:15.854Z","updated_at":"2023-03-06T20:11:42.998Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Huber-group-EMBL","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Huber-group-EMBL/repositories"},"tags":[{"name":"v1.14.1","sha":"5ddd4842d511af423241e508995c2a95dab1d592","kind":"commit","published_at":"2023-11-06T09:04:15.000Z","download_url":"https://codeload.github.com/Huber-group-EMBL/rhdf5filters/tar.gz/v1.14.1","html_url":"https://github.com/Huber-group-EMBL/rhdf5filters/releases/tag/v1.14.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Huber-group-EMBL/rhdf5filters@v1.14.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/tags/v1.14.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/tags/v1.14.1/manifests"},{"name":"v1.15.1","sha":"74900758ed7b4f47065cc8caf0ee1a1766120c83","kind":"commit","published_at":"2023-11-06T09:01:18.000Z","download_url":"https://codeload.github.com/Huber-group-EMBL/rhdf5filters/tar.gz/v1.15.1","html_url":"https://github.com/Huber-group-EMBL/rhdf5filters/releases/tag/v1.15.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Huber-group-EMBL/rhdf5filters@v1.15.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/tags/v1.15.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/tags/v1.15.1/manifests"}]},"repo_metadata_updated_at":"2025-08-24T12:57:39.161Z","dependent_packages_count":2,"downloads":1592781,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":2.479338842975207,"dependent_repos_count":0.0,"dependent_packages_count":14.354066985645932,"stargazers_count":20.05219660722053,"forks_count":9.569377990430622,"docker_downloads_count":null,"average":9.29099608525446},"purl":"pkg:bioconductor/rhdf5filters","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/rhdf5filters","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/rhdf5filters","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/rhdf5filters/dependencies","status":null,"funding_links":[],"critical":false,"issue_metadata":{"last_synced_at":"2025-08-24T02:27:17.790Z","issues_count":16,"pull_requests_count":8,"avg_time_to_close_issue":9633489.2,"avg_time_to_close_pull_request":1404245.857142857,"issues_closed_count":15,"pull_requests_closed_count":7,"pull_request_authors_count":5,"issue_authors_count":16,"avg_comments_per_issue":5.5,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":163817.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":7.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/issues","maintainers":[{"login":"grimbough","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/grimbough"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rhdf5filters/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rhdf5filters/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rhdf5filters/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/rhdf5filters/related_packages","maintainers":[{"uuid":"grimbough@gmail.com","login":null,"name":"Mike Smith","email":"grimbough@gmail.com","url":null,"packages_count":7,"html_url":null,"role":null,"created_at":"2023-10-31T06:46:20.233Z","updated_at":"2023-10-31T06:46:20.233Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/grimbough@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":9754026,"full_name":"Huber-group-EMBL/rhdf5filters","default_branch":"devel","committers":[{"name":"Mike Smith","email":"grimbough@gmail.com","login":"grimbough","count":292},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":10},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":10}],"total_commits":312,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":104.0,"dds":0.0641025641025641,"past_year_committers":[{"name":"Mike Smith","email":"grimbough@gmail.com","login":"grimbough","count":19},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":4}],"past_year_total_commits":23,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":11.5,"past_year_dds":0.17391304347826086,"last_synced_at":"2025-04-23T15:54:37.578Z","last_synced_commit":"9bda651eea27ecdd0d5e63da02bd62fea1cb2be0","created_at":"2025-04-22T13:08:31.071Z","updated_at":"2025-04-23T15:54:37.745Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Huber-group-EMBL/rhdf5filters","html_url":"https://github.com/Huber-group-EMBL/rhdf5filters","last_synced_at":"2025-08-24T02:27:17.790Z","status":"error","issues_count":16,"pull_requests_count":8,"avg_time_to_close_issue":9633489.2,"avg_time_to_close_pull_request":1404245.857142857,"issues_closed_count":15,"pull_requests_closed_count":7,"pull_request_authors_count":5,"issue_authors_count":16,"avg_comments_per_issue":5.5,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":163817.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":7.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-23T20:17:07.733Z","updated_at":"2025-08-24T02:27:17.791Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Huber-group-EMBL%2Frhdf5filters/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":14},"pull_request_author_associations_count":{"NONE":3,"COLLABORATOR":3},"issue_authors":{"mr-c":1,"QSong-github":1,"kasperdanielhansen":1,"mfrisoli126":1,"3N4N":1,"tom-snir":1,"b524198065":1,"blackhill86":1,"js2264":1,"khughitt":1,"vjcitn":1,"aljabadi":1,"lucygarner":1,"colinbrislawn":1},"pull_request_authors":{"grimbough":3,"mr-c":1,"vjcitn":1,"sanromd":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10157396,"issues_count":32042646,"pull_requests_count":100177781,"authors_count":10725202,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"grimbough","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/grimbough"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["compression","filter-plugin","hdf5","rpackage"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-28T23:31:39.662Z","updated_at":"2022-08-28T23:31:39.662Z","repository_link":"https://github.com/Huber-group-EMBL/rhdf5filters/blob/devel/DESCRIPTION","dependencies":[{"id":3072728496,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3072728497,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3072728498,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3072728499,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 2.1.0","direct":true,"kind":"suggests","optional":false},{"id":3072728500,"package_name":"rhdf5","ecosystem":"cran","requirements":"\u003e= 2.34.0","direct":true,"kind":"suggests","optional":false}]}],"score":17.325516424201677,"created_at":"2025-09-08T10:44:39.587Z","updated_at":"2025-10-07T08:24:02.983Z","avatar_url":"https://github.com/Huber-group-EMBL.png","language":"C","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","gene","ontology","bioconductor","rhdf5","bioinformatics","image-analysis","core-services","u24ca289073","core-package"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61368","html_url":"https://science.ecosyste.ms/projects/61368"}