{"id":61370,"name":"glmSparseNet","description":"An R :package: for network-based and  sparse generalized linear models (GLM)","url":"https://github.com/sysbiomed/glmsparsenet","last_synced_at":"2025-09-08T12:29:36.816Z","repository":{"id":55534497,"uuid":"139873278","full_name":"sysbiomed/glmSparseNet","owner":"sysbiomed","description":"An R :package: for network-based and  sparse generalized linear models (GLM)","archived":false,"fork":false,"pushed_at":"2024-02-14T12:34:47.000Z","size":17749,"stargazers_count":6,"open_issues_count":1,"forks_count":3,"subscribers_count":4,"default_branch":"devel","last_synced_at":"2025-09-01T01:39:33.870Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://www.sound-biomed.eu","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sysbiomed.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-07-05T16:11:03.000Z","updated_at":"2024-10-30T06:07:06.000Z","dependencies_parsed_at":"2022-08-15T02:40:52.337Z","dependency_job_id":null,"html_url":"https://github.com/sysbiomed/glmSparseNet","commit_stats":null,"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/sysbiomed/glmSparseNet","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sysbiomed","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274184962,"owners_count":25237289,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"sysbiomed","name":"SysBioMed - INESC-ID, IT, IST, ULisboa","uuid":"40800865","kind":"organization","description":"","email":"susanavinga@tecnico.ulisboa.pt","website":"https://sels.tecnico.ulisboa.pt/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/40800865?v=4","repositories_count":2,"last_synced_at":"2023-10-19T18:04:42.317Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sysbiomed","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-10-19T18:04:42.329Z","updated_at":"2023-10-19T18:04:42.329Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sysbiomed","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sysbiomed/repositories"},"packages":[{"id":8419545,"name":"glmSparseNet","ecosystem":"bioconductor","description":"Network Centrality Metrics for Elastic-Net Regularized Models","homepage":"https://www.github.com/sysbiomed/glmSparseNet ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/sysbiomed/glmSparseNet","keywords_array":["Classification","DimensionReduction","GraphAndNetwork","Network","Regression","Software","StatisticalMethod","Survival"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T14:36:58.341Z","latest_release_published_at":"2025-04-28T04:32:14.013Z","latest_release_number":"1.26.0","last_synced_at":"2025-09-01T01:50:07.630Z","created_at":"2023-10-12T14:36:58.150Z","updated_at":"2025-09-01T01:50:07.630Z","registry_url":"https://bioconductor.org/packages/glmSparseNet","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/glmSparseNet/inst/doc/glmSparseNet.pdf","metadata":{},"repo_metadata":{"uuid":"139873278","full_name":"sysbiomed/glmSparseNet","owner":"sysbiomed","description":"An R :package: for network-based and  sparse generalized linear models (GLM)","archived":false,"fork":false,"pushed_at":"2022-05-25T08:18:01.000Z","size":16171,"stargazers_count":3,"open_issues_count":1,"forks_count":2,"subscribers_count":5,"default_branch":"master","last_synced_at":"2023-10-19T10:50:04.168Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://www.sound-biomed.eu","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sysbiomed.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-07-05T16:11:03.000Z","updated_at":"2021-10-14T09:52:58.000Z","dependencies_parsed_at":"2022-08-15T02:40:52.337Z","dependency_job_id":null,"html_url":"https://github.com/sysbiomed/glmSparseNet","commit_stats":null,"previous_names":[],"tags_count":6,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sysbiomed","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":172188354,"owners_count":9793173,"icon_url":"https://github.com/github.png","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"sysbiomed","name":"SysBioMed - INESC-ID, IT, IST, ULisboa","uuid":"40800865","kind":"organization","description":"","email":"susanavinga@tecnico.ulisboa.pt","website":"https://sels.tecnico.ulisboa.pt/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/40800865?v=4","repositories_count":2,"last_synced_at":"2023-10-19T18:04:42.317Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sysbiomed","created_at":"2023-10-19T18:04:42.329Z","updated_at":"2023-10-19T18:04:42.329Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sysbiomed","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sysbiomed/repositories"},"tags":[{"name":"v0.99.32","sha":"72a3d951a7a2b014cdff5ba03ad471032d48d5e8","kind":"commit","published_at":"2018-10-10T16:12:45.000Z","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/v0.99.32","html_url":"https://github.com/sysbiomed/glmSparseNet/releases/tag/v0.99.32","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.99.32","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.99.32/manifests"},{"name":"v0.99.16","sha":"61506e29f054abab819b169e1d6a55965018bd87","kind":"commit","published_at":"2018-09-30T02:59:59.000Z","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/v0.99.16","html_url":"https://github.com/sysbiomed/glmSparseNet/releases/tag/v0.99.16","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.99.16","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.99.16/manifests"},{"name":"v0.99.14","sha":"c632792261f66634840e3e3e68b87661dbce0c40","kind":"commit","published_at":"2018-09-29T03:44:22.000Z","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/v0.99.14","html_url":"https://github.com/sysbiomed/glmSparseNet/releases/tag/v0.99.14","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.99.14","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.99.14/manifests"},{"name":"v0.1.8","sha":"9217e3b214d9c5af9ec78c972abca080a79c6bce","kind":"commit","published_at":"2018-08-24T18:07:00.000Z","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/v0.1.8","html_url":"https://github.com/sysbiomed/glmSparseNet/releases/tag/v0.1.8","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.1.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.1.8/manifests"},{"name":"v0.1.7","sha":"66c7a899c005922cedab2477aecd35ad992bdccb","kind":"commit","published_at":"2018-08-22T16:31:35.000Z","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/v0.1.7","html_url":"https://github.com/sysbiomed/glmSparseNet/releases/tag/v0.1.7","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.1.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.1.7/manifests"},{"name":"v0.1.5","sha":"9a2e3c2515f3b0c21c08c60fdbb9ed10b075c825","kind":"commit","published_at":"2018-07-09T09:42:22.000Z","download_url":"https://codeload.github.com/sysbiomed/glmSparseNet/tar.gz/v0.1.5","html_url":"https://github.com/sysbiomed/glmSparseNet/releases/tag/v0.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/tags/v0.1.5/manifests"}]},"repo_metadata_updated_at":"2023-11-20T10:01:50.424Z","dependent_packages_count":0,"downloads":104996,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":65.09433962264151,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":21.69811320754717},"purl":"pkg:bioconductor/glmSparseNet","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/glmSparseNet","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/glmSparseNet","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/glmSparseNet/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/glmSparseNet/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/glmSparseNet/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/glmSparseNet/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/glmSparseNet/related_packages","maintainers":[{"uuid":"andre.verissimo@tecnico.ulisboa.pt","login":null,"name":"André Veríssimo","email":"andre.verissimo@tecnico.ulisboa.pt","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-20T10:03:57.497Z","updated_at":"2023-11-20T10:03:57.497Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/andre.verissimo@tecnico.ulisboa.pt/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402945,"full_name":"sysbiomed/glmSparseNet","default_branch":"master","committers":[{"name":"André Veríssimo","email":"afsverissimo@gmail.com","login":null,"count":303},{"name":"eunicecarrasquinha","email":"eunicecarrasquinha@gmail.com","login":null,"count":20},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":14},{"name":"Eunice Trigueirao","email":"eunice.trigueirao@tecnico.ulisboa.pt","login":null,"count":11},{"name":"Susana Vinga","email":"susanavinga@gmail.com","login":null,"count":6},{"name":"Susana Vinga","email":"susanavinga@tecnico.ulisboa.pt","login":null,"count":3},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":null,"count":1},{"name":"Marta Lopes","email":"marta.lopes@tecnico.ulisboa.pt","login":null,"count":1}],"total_commits":361,"total_committers":9,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":40.111111111111114,"dds":0.16066481994459836,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:04:14.373Z","last_synced_commit":"31484284074de11040724843db9852986ce1b60d","created_at":"2023-10-25T13:04:10.478Z","updated_at":"2023-10-25T13:04:14.374Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483146,"commits_count":854228848,"contributors_count":31137076,"owners_count":908396,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"sysbiomed/glmSparseNet","html_url":"https://github.com/sysbiomed/glmSparseNet","last_synced_at":"2025-09-01T01:26:09.237Z","status":"error","issues_count":5,"pull_requests_count":1,"avg_time_to_close_issue":8454891.5,"avg_time_to_close_pull_request":54645.0,"issues_closed_count":4,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":5,"avg_comments_per_issue":1.2,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-04-09T14:37:45.975Z","updated_at":"2025-09-01T01:26:09.238Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sysbiomed%2FglmSparseNet/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":4,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":1},"issue_authors":{"LiNk-NY":1,"ggautreau":1,"Kayla-Morrell":1,"liufuyan2016":1,"KingJuliusss":1},"pull_request_authors":{"LiNk-NY":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10165784,"issues_count":31999265,"pull_requests_count":100269215,"authors_count":10729006,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-15T02:40:51.903Z","updated_at":"2022-08-15T02:40:51.903Z","repository_link":"https://github.com/sysbiomed/glmSparseNet/blob/devel/DESCRIPTION","dependencies":[{"id":1730933113,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.1","direct":true,"kind":"depends","optional":false},{"id":1730933114,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1730933115,"package_name":"MultiAssayExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1730933116,"package_name":"glmnet","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":1730933117,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933118,"package_name":"biomaRt","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933119,"package_name":"futile.logger","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933120,"package_name":"futile.options","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933121,"package_name":"forcats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933122,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933123,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933124,"package_name":"glue","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933125,"package_name":"readr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933126,"package_name":"digest","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933127,"package_name":"httr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933128,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933129,"package_name":"survminer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933130,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933131,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933132,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933133,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1730933134,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933135,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933136,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933137,"package_name":"survival","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933138,"package_name":"survcomp","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933139,"package_name":"pROC","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933140,"package_name":"VennDiagram","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933141,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933142,"package_name":"curatedTCGAData","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1730933143,"package_name":"TCGAutils","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":15.70482178369445,"created_at":"2025-09-08T10:44:39.599Z","updated_at":"2025-10-07T08:24:03.026Z","avatar_url":"https://github.com/sysbiomed.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1101/403402","https://doi.org/10.1186/s12859-016-1310-4"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","gene","hitchip-atlas","hitchip","rpackage","data-access","rna-seq","outlier-detection","mendelian-genetics","expression-analysis"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61370","html_url":"https://science.ecosyste.ms/projects/61370"}