{"id":61386,"name":"smoothclust","description":"Method for segmentation of spatial domains with smooth boundaries and clustering in spatial transcriptomics","url":"https://github.com/lmweber/smoothclust","last_synced_at":"2025-09-08T12:29:42.372Z","repository":{"id":214424463,"uuid":"736495966","full_name":"lmweber/smoothclust","owner":"lmweber","description":"Method for segmentation of spatial domains with smooth boundaries and clustering in spatial transcriptomics","archived":false,"fork":false,"pushed_at":"2025-05-20T01:39:39.000Z","size":105,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2025-08-12T21:33:29.351Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lmweber.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-12-28T04:17:31.000Z","updated_at":"2025-05-20T01:39:42.000Z","dependencies_parsed_at":null,"dependency_job_id":"4c637a67-c03d-4a32-a384-e5a3b53bd59d","html_url":"https://github.com/lmweber/smoothclust","commit_stats":null,"previous_names":["lmweber/smoothclust"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/lmweber/smoothclust","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","download_url":"https://codeload.github.com/lmweber/smoothclust/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185053,"owners_count":25237303,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"lmweber","name":"Lukas Weber","uuid":"8062417","kind":"user","description":"Assistant Professor, Department of Biostatistics, Boston University","email":"","website":"https://lmweber.org/","location":"Boston, MA","twitter":null,"company":"Boston University","icon_url":"https://avatars.githubusercontent.com/u/8062417?u=7d110b41c67835d59e47c7885564233bc1228625\u0026v=4","repositories_count":75,"last_synced_at":"2024-03-17T20:20:25.422Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/lmweber","funding_links":[],"total_stars":190,"followers":null,"following":null,"created_at":"2022-11-08T23:21:12.673Z","updated_at":"2024-03-17T20:20:25.878Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber/repositories"},"packages":[{"id":9847353,"name":"smoothclust","ecosystem":"bioconductor","description":"smoothclust","homepage":"https://github.com/lmweber/smoothclust ","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/lmweber/smoothclust","keywords_array":["Clustering","GeneExpression","SingleCell","Software","Spatial","Transcriptomics"],"namespace":null,"versions_count":5,"first_release_published_at":"2024-05-02T04:00:48.558Z","latest_release_published_at":"2025-05-12T21:06:12.675Z","latest_release_number":"1.4.0","last_synced_at":"2025-08-12T21:12:47.419Z","created_at":"2024-05-02T04:00:46.798Z","updated_at":"2025-08-13T05:14:45.662Z","registry_url":"https://bioconductor.org/packages/smoothclust","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/smoothclust/inst/doc/smoothclust.pdf","metadata":{},"repo_metadata":{"id":214424463,"uuid":"736495966","full_name":"lmweber/smoothclust","owner":"lmweber","description":"Method for segmentation of spatial domains with smooth boundaries and clustering in spatial transcriptomics","archived":false,"fork":false,"pushed_at":"2025-05-20T01:39:39.000Z","size":105,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2025-07-19T01:34:24.987Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lmweber.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-12-28T04:17:31.000Z","updated_at":"2025-05-20T01:39:42.000Z","dependencies_parsed_at":null,"dependency_job_id":"4c637a67-c03d-4a32-a384-e5a3b53bd59d","html_url":"https://github.com/lmweber/smoothclust","commit_stats":null,"previous_names":["lmweber/smoothclust"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/lmweber/smoothclust","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","download_url":"https://codeload.github.com/lmweber/smoothclust/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270135302,"owners_count":24533253,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-12T02:00:09.011Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"lmweber","name":"Lukas Weber","uuid":"8062417","kind":"user","description":"Assistant Professor, Department of Biostatistics, Boston University","email":"","website":"https://lmweber.org/","location":"Boston, MA","twitter":null,"company":"Boston University","icon_url":"https://avatars.githubusercontent.com/u/8062417?u=7d110b41c67835d59e47c7885564233bc1228625\u0026v=4","repositories_count":75,"last_synced_at":"2024-03-17T20:20:25.422Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/lmweber","funding_links":[],"total_stars":190,"followers":null,"following":null,"created_at":"2022-11-08T23:21:12.673Z","updated_at":"2024-03-17T20:20:25.878Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-13T05:14:45.662Z","dependent_packages_count":0,"downloads":3701,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":97.51996637242539,"dependent_repos_count":0.0,"dependent_packages_count":31.273644388398488,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":42.93120358694129},"purl":"pkg:bioconductor/smoothclust","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/smoothclust","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/smoothclust","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/smoothclust/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-18T22:34:58.289Z","issues_count":0,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/smoothclust/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/smoothclust/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/smoothclust/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/smoothclust/related_packages","maintainers":[{"uuid":"lmweb012@gmail.com","login":null,"name":"Lukas M. Weber","email":"lmweb012@gmail.com","url":null,"packages_count":3,"html_url":null,"role":null,"created_at":"2025-03-23T17:46:33.832Z","updated_at":"2025-03-23T17:46:33.832Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/lmweb012@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":2660642,"full_name":"lmweber/smoothclust","default_branch":"devel","committers":[{"name":"Lukas Weber","email":"lmweberedu@gmail.com","login":"lmweber","count":127},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":4},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":2}],"total_commits":133,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":44.333333333333336,"dds":0.045112781954887216,"past_year_committers":[{"name":"Lukas Weber","email":"lmweb012@gmail.com","login":"lmweber","count":13},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":2},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":2}],"past_year_total_commits":17,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":5.666666666666667,"past_year_dds":0.23529411764705888,"last_synced_at":"2025-06-16T09:28:55.847Z","last_synced_commit":"5fee47e2ebae2ee7181206c6959c85a57b6e4fff","created_at":"2024-10-10T22:26:12.325Z","updated_at":"2025-06-16T09:28:55.889Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483146,"commits_count":854228848,"contributors_count":31137076,"owners_count":908396,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"lmweber/smoothclust","html_url":"https://github.com/lmweber/smoothclust","last_synced_at":"2025-08-13T20:35:45.420Z","status":"error","issues_count":0,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-10-10T22:26:14.830Z","updated_at":"2025-08-13T20:35:45.420Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fsmoothclust/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10165784,"issues_count":31999265,"pull_requests_count":100269215,"authors_count":10729006,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"PushEvent":9,"CreateEvent":2},"last_year":{"PushEvent":9,"CreateEvent":2}},"keywords":[],"dependencies":[],"score":9.315240781801553,"created_at":"2025-09-08T10:44:53.359Z","updated_at":"2025-10-07T08:24:03.305Z","avatar_url":"https://github.com/lmweber.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","gene"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61386","html_url":"https://science.ecosyste.ms/projects/61386"}