{"id":61397,"name":"pathlinkR","description":"Analysis and visualization of RNA-Seq results","url":"https://github.com/hancockinformatics/pathlinkr","last_synced_at":"2025-09-08T12:30:08.711Z","repository":{"id":155315826,"uuid":"610983440","full_name":"hancockinformatics/pathlinkR","owner":"hancockinformatics","description":"Analysis and visualization of RNA-Seq results","archived":false,"fork":false,"pushed_at":"2025-05-28T23:37:32.000Z","size":18404,"stargazers_count":30,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-09-03T09:52:25.372Z","etag":null,"topics":["bioinformatics","networks","pathway-enrichment-analysis","r","visualization"],"latest_commit_sha":null,"homepage":"https://hancockinformatics.github.io/pathlinkR/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hancockinformatics.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-03-07T21:47:20.000Z","updated_at":"2025-08-14T16:33:18.000Z","dependencies_parsed_at":"2024-10-24T22:34:10.188Z","dependency_job_id":"e8c413c1-5a2f-42a9-9b83-e2ca828b6425","html_url":"https://github.com/hancockinformatics/pathlinkR","commit_stats":null,"previous_names":["hancockinformatics/pathlinkr"],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/hancockinformatics/pathlinkR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hancockinformatics","download_url":"https://codeload.github.com/hancockinformatics/pathlinkR/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185071,"owners_count":25237307,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"hancockinformatics","name":"Hancock Lab","uuid":"47334603","kind":"organization","description":"","email":null,"website":"http://cmdr.ubc.ca/bobh/","location":"Canada","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/47334603?v=4","repositories_count":4,"last_synced_at":"2023-04-25T19:28:21.581Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/hancockinformatics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-04-25T19:28:21.666Z","updated_at":"2023-04-25T19:28:21.666Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hancockinformatics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hancockinformatics/repositories"},"packages":[{"id":9847339,"name":"pathlinkR","ecosystem":"bioconductor","description":"Analyze and interpret RNA-Seq results","homepage":"https://github.com/hancockinformatics/pathlinkR ","licenses":"GPL-3 + file LICENSE","normalized_licenses":["AML"],"repository_url":"https://github.com/hancockinformatics/pathlinkR","keywords_array":["GeneSetEnrichment","Network","NetworkEnrichment","Pathways","RNASeq","Reactome","Software"],"namespace":null,"versions_count":4,"first_release_published_at":"2024-05-02T04:01:07.376Z","latest_release_published_at":"2025-04-28T15:20:18.563Z","latest_release_number":"1.4.0","last_synced_at":"2025-09-03T02:02:52.517Z","created_at":"2024-05-02T04:00:46.111Z","updated_at":"2025-09-03T09:53:44.511Z","registry_url":"https://bioconductor.org/packages/pathlinkR","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/pathlinkR/inst/doc/pathlinkR.pdf","metadata":{},"repo_metadata":{"id":155315826,"uuid":"610983440","full_name":"hancockinformatics/pathlinkR","owner":"hancockinformatics","description":"Analysis and visualization of RNA-Seq results","archived":false,"fork":false,"pushed_at":"2025-05-28T23:37:32.000Z","size":18404,"stargazers_count":29,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-07-28T19:36:52.344Z","etag":null,"topics":["bioinformatics","networks","pathway-enrichment-analysis","r","visualization"],"latest_commit_sha":null,"homepage":"https://hancockinformatics.github.io/pathlinkR/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hancockinformatics.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-03-07T21:47:20.000Z","updated_at":"2025-05-28T20:39:03.000Z","dependencies_parsed_at":"2024-10-24T22:34:10.188Z","dependency_job_id":"e8c413c1-5a2f-42a9-9b83-e2ca828b6425","html_url":"https://github.com/hancockinformatics/pathlinkR","commit_stats":null,"previous_names":["hancockinformatics/pathlinkr"],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/hancockinformatics/pathlinkR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hancockinformatics","download_url":"https://codeload.github.com/hancockinformatics/pathlinkR/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273423957,"owners_count":25103146,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"hancockinformatics","name":"Hancock Lab","uuid":"47334603","kind":"organization","description":"","email":null,"website":"http://cmdr.ubc.ca/bobh/","location":"Canada","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/47334603?v=4","repositories_count":4,"last_synced_at":"2023-04-25T19:28:21.581Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/hancockinformatics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-04-25T19:28:21.666Z","updated_at":"2023-04-25T19:28:21.666Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hancockinformatics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hancockinformatics/repositories"},"tags":[{"name":"v1.4.0","sha":"355fc139df0718dedb5d214082215e5e40210b51","kind":"commit","published_at":"2025-04-15T17:25:26.000Z","download_url":"https://codeload.github.com/hancockinformatics/pathlinkR/tar.gz/v1.4.0","html_url":"https://github.com/hancockinformatics/pathlinkR/releases/tag/v1.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/hancockinformatics/pathlinkR@v1.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.4.0/manifests"},{"name":"v1.2.0","sha":"40b439899e4345694c3afa338ff88d4f2f3ff86a","kind":"commit","published_at":"2024-10-29T15:25:56.000Z","download_url":"https://codeload.github.com/hancockinformatics/pathlinkR/tar.gz/v1.2.0","html_url":"https://github.com/hancockinformatics/pathlinkR/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/hancockinformatics/pathlinkR@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.2.0/manifests"},{"name":"v1.0.1","sha":"b7c5e612860e1b537ecf8538c115c9d577cd10fe","kind":"commit","published_at":"2024-07-02T16:32:32.000Z","download_url":"https://codeload.github.com/hancockinformatics/pathlinkR/tar.gz/v1.0.1","html_url":"https://github.com/hancockinformatics/pathlinkR/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/hancockinformatics/pathlinkR@v1.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"014d6bff7b7187eb895dc23188d11481c794a5e8","kind":"commit","published_at":"2024-04-30T15:53:06.000Z","download_url":"https://codeload.github.com/hancockinformatics/pathlinkR/tar.gz/v1.0.0","html_url":"https://github.com/hancockinformatics/pathlinkR/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/hancockinformatics/pathlinkR@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/tags/v1.0.0/manifests"}]},"repo_metadata_updated_at":"2025-09-03T09:53:44.510Z","dependent_packages_count":0,"downloads":4631,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":95.41824295922656,"dependent_repos_count":0.0,"dependent_packages_count":31.273644388398488,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":42.23062911587502},"purl":"pkg:bioconductor/pathlinkR","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/pathlinkR","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/pathlinkR","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/pathlinkR/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-28T19:30:23.851Z","issues_count":2,"pull_requests_count":17,"avg_time_to_close_issue":1042398.5,"avg_time_to_close_pull_request":9145.176470588236,"issues_closed_count":2,"pull_requests_closed_count":17,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":6.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":17,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":1042398.5,"past_year_avg_time_to_close_pull_request":66614.0,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":6.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/pathlinkR/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/pathlinkR/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/pathlinkR/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/pathlinkR/related_packages","maintainers":[{"uuid":"travis.m.blimkie@gmail.com","login":null,"name":"Travis Blimkie","email":"travis.m.blimkie@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2024-05-02T04:02:26.756Z","updated_at":"2024-05-02T04:02:26.756Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/travis.m.blimkie@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":10876534,"full_name":"hancockinformatics/pathlinkR","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-09-03T09:53:27.815Z","updated_at":"2025-09-03T09:53:27.815Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483146,"commits_count":854228848,"contributors_count":31137076,"owners_count":908396,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"hancockinformatics/pathlinkR","html_url":"https://github.com/hancockinformatics/pathlinkR","last_synced_at":"2025-07-28T19:30:23.851Z","status":"error","issues_count":2,"pull_requests_count":17,"avg_time_to_close_issue":1042398.5,"avg_time_to_close_pull_request":9145.176470588236,"issues_closed_count":2,"pull_requests_closed_count":17,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":6.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":17,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":1042398.5,"past_year_avg_time_to_close_pull_request":66614.0,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":6.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2024-07-21T00:13:24.284Z","updated_at":"2025-09-03T05:45:29.164Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hancockinformatics%2FpathlinkR/issues","issue_labels_count":{"question":1},"pull_request_labels_count":{"documentation":2,"enhancement":2},"issue_author_associations_count":{"NONE":2},"pull_request_author_associations_count":{"CONTRIBUTOR":23},"issue_authors":{"Navin-tamil":1,"146107576":1},"pull_request_authors":{"travis-m-blimkie":23},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10100132,"issues_count":31474143,"pull_requests_count":97447451,"authors_count":10702673,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"question":1},"past_year_pull_request_labels_count":{"documentation":2,"enhancement":2},"past_year_issue_author_associations_count":{"NONE":2},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":2},"past_year_issue_authors":{"146107576":1,"Navin-tamil":1},"past_year_pull_request_authors":{"travis-m-blimkie":2},"maintainers":[],"active_maintainers":[]},"events":{"total":{"CreateEvent":6,"IssuesEvent":2,"ReleaseEvent":3,"WatchEvent":17,"DeleteEvent":2,"IssueCommentEvent":5,"PushEvent":15,"PullRequestReviewEvent":1,"PullRequestEvent":2,"ForkEvent":1},"last_year":{"CreateEvent":6,"IssuesEvent":2,"ReleaseEvent":3,"WatchEvent":17,"DeleteEvent":2,"IssueCommentEvent":5,"PushEvent":15,"PullRequestReviewEvent":1,"PullRequestEvent":2,"ForkEvent":1}},"keywords":["bioinformatics","networks","pathway-enrichment-analysis","r","visualization"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2023-08-15T23:11:34.391Z","updated_at":"2023-08-15T23:11:34.391Z","repository_link":"https://github.com/hancockinformatics/pathlinkR/blob/devel/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":12687003512,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":12687003513,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12687003514,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12687003515,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12687003516,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-coverage.yaml","sha":null,"kind":"manifest","created_at":"2023-08-15T23:11:34.499Z","updated_at":"2023-08-15T23:11:34.499Z","repository_link":"https://github.com/hancockinformatics/pathlinkR/blob/devel/.github/workflows/test-coverage.yaml","dependencies":[{"id":12687003535,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":12687003536,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12687003537,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12687003538,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-08-15T23:11:34.633Z","updated_at":"2023-08-15T23:11:34.633Z","repository_link":"https://github.com/hancockinformatics/pathlinkR/blob/devel/DESCRIPTION","dependencies":[{"id":12687003552,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.2.0","direct":true,"kind":"depends","optional":false},{"id":12687003553,"package_name":"circlize","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003554,"package_name":"clusterProfiler","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003555,"package_name":"ComplexHeatmap","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003694,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003695,"package_name":"ggforce","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003696,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003697,"package_name":"ggpubr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003698,"package_name":"ggraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003699,"package_name":"ggrepel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003700,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003701,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003702,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003703,"package_name":"sigora","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003704,"package_name":"SteinerNet","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003705,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003706,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003707,"package_name":"tidygraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003708,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003709,"package_name":"vegan","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003710,"package_name":"visNetwork","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":12687003711,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003733,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003734,"package_name":"biomaRt","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003735,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003736,"package_name":"jsonlite","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003737,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003738,"package_name":"org.Hs.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003739,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003740,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12687003741,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false},{"id":12687003742,"package_name":"vdiffr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-08T10:44:53.419Z","updated_at":"2025-10-07T08:24:03.531Z","avatar_url":"https://github.com/hancockinformatics.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1371/journal.pcbi.1012422"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/61397","html_url":"https://science.ecosyste.ms/projects/61397"}