{"id":61441,"name":"diffcoexp","description":"Differential coexpression analysis","url":"https://github.com/hidelab/diffcoexp","last_synced_at":"2025-09-08T12:30:55.137Z","repository":{"id":185917541,"uuid":"106426787","full_name":"hidelab/diffcoexp","owner":"hidelab","description":"Differential coexpression analysis","archived":false,"fork":false,"pushed_at":"2023-08-09T13:25:54.000Z","size":252,"stargazers_count":16,"open_issues_count":1,"forks_count":3,"subscribers_count":9,"default_branch":"devel","last_synced_at":"2025-09-01T01:39:31.593Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hidelab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-10-10T14:15:56.000Z","updated_at":"2025-08-20T08:20:16.000Z","dependencies_parsed_at":null,"dependency_job_id":"fcb73e77-4787-43f1-be8b-59f2cedb699e","html_url":"https://github.com/hidelab/diffcoexp","commit_stats":null,"previous_names":["hidelab/diffcoexp"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/hidelab/diffcoexp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hidelab","download_url":"https://codeload.github.com/hidelab/diffcoexp/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185169,"owners_count":25237330,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"hidelab","name":"hidelab","uuid":"19820065","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19820065?v=4","repositories_count":1,"last_synced_at":"2023-08-03T18:25:38.636Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/hidelab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-08-03T18:25:38.638Z","updated_at":"2023-08-03T18:25:38.638Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hidelab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hidelab/repositories"},"packages":[{"id":8419226,"name":"diffcoexp","ecosystem":"bioconductor","description":"Differential Co-expression Analysis","homepage":"https://github.com/hidelab/diffcoexp ","licenses":"GPL (\u003e2)","normalized_licenses":["CNRI-Python-GPL-Compatible"],"repository_url":"https://github.com/hidelab/diffcoexp","keywords_array":["Coverage","DifferentialExpression","GeneExpression","ImmunoOncology","Microarray","OneChannel","RNASeq","Sequencing","Software","Transcription","TwoChannel"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:30:11.786Z","latest_release_published_at":"2025-05-15T02:22:14.255Z","latest_release_number":"1.28.0","last_synced_at":"2025-09-01T01:50:18.099Z","created_at":"2023-10-12T14:30:11.378Z","updated_at":"2025-09-01T02:29:44.751Z","registry_url":"https://bioconductor.org/packages/diffcoexp","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/diffcoexp/inst/doc/diffcoexp.pdf","metadata":{},"repo_metadata":{"id":185917541,"uuid":"106426787","full_name":"hidelab/diffcoexp","owner":"hidelab","description":"Differential coexpression analysis","archived":false,"fork":false,"pushed_at":"2023-08-09T13:25:54.000Z","size":252,"stargazers_count":15,"open_issues_count":1,"forks_count":3,"subscribers_count":9,"default_branch":"devel","last_synced_at":"2025-08-17T11:47:03.499Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hidelab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-10-10T14:15:56.000Z","updated_at":"2023-10-26T15:23:25.000Z","dependencies_parsed_at":null,"dependency_job_id":"fcb73e77-4787-43f1-be8b-59f2cedb699e","html_url":"https://github.com/hidelab/diffcoexp","commit_stats":null,"previous_names":["hidelab/diffcoexp"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/hidelab/diffcoexp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hidelab","download_url":"https://codeload.github.com/hidelab/diffcoexp/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273063645,"owners_count":25039166,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-31T02:00:09.071Z","response_time":79,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"hidelab","name":"hidelab","uuid":"19820065","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19820065?v=4","repositories_count":1,"last_synced_at":"2023-08-03T18:25:38.636Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/hidelab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-08-03T18:25:38.638Z","updated_at":"2023-08-03T18:25:38.638Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hidelab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hidelab/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-09-01T02:29:44.750Z","dependent_packages_count":0,"downloads":16543,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":61.16152450090744,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":20.387174833635815},"purl":"pkg:bioconductor/diffcoexp","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/diffcoexp","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/diffcoexp","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/diffcoexp/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-09-01T01:26:08.533Z","issues_count":2,"pull_requests_count":3,"avg_time_to_close_issue":60351.0,"avg_time_to_close_pull_request":13624.666666666668,"issues_closed_count":1,"pull_requests_closed_count":3,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":1.0,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcoexp/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcoexp/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcoexp/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcoexp/related_packages","maintainers":[{"uuid":"wenbin.wei2@durham.ac.uk","login":null,"name":"Wenbin Wei","email":"wenbin.wei2@durham.ac.uk","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-25T13:45:09.537Z","updated_at":"2023-11-25T13:45:09.537Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/wenbin.wei2@durham.ac.uk/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402882,"full_name":"hidelab/diffcoexp","default_branch":"master","committers":[{"name":"wenbinwei","email":"W.Wei@sheffield.ac.uk","login":null,"count":107},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":14},{"name":"Sandeep Amberkar","email":"sandeep.amberkar18@gmail.com","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"LiNk-NY","email":"marcel.ramosperez@roswellpark.org","login":null,"count":1},{"name":"Deepak Tanwar","email":"dktanwar@hotmail.com","login":null,"count":1},{"name":"Wenbin Wei","email":"wenbinwei@da-bsc-44.home","login":null,"count":1},{"name":"Wenbin Wei","email":"wenbin.wei2@durham.ac.uk","login":null,"count":1},{"name":"W. Wei","email":"md1wwxx@testnode03.iceberg.shef.ac.uk","login":null,"count":1},{"name":"wenbinwei","email":"prsd58@login1.ham8.dur.ac.uk","login":null,"count":1},{"name":"Martin Grigorov","email":"martin-g","login":"martin-g","count":1},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":null,"count":1}],"total_commits":139,"total_committers":15,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":9.266666666666667,"dds":0.2302158273381295,"past_year_committers":[{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"Wenbin Wei","email":"wenbin.wei2@durham.ac.uk","login":null,"count":1},{"name":"Martin Grigorov","email":"martin-g","login":"martin-g","count":1},{"name":"wenbinwei","email":"prsd58@login1.ham8.dur.ac.uk","login":null,"count":1}],"past_year_total_commits":7,"past_year_total_committers":5,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":1.4,"past_year_dds":0.7142857142857143,"last_synced_at":"2023-10-25T13:03:43.750Z","last_synced_commit":"ab27da235c87aae8768ded92d3d45ec0f1e90c05","created_at":"2023-10-25T13:03:40.347Z","updated_at":"2023-10-25T13:03:43.750Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483146,"commits_count":854228848,"contributors_count":31137076,"owners_count":908396,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"hidelab/diffcoexp","html_url":"https://github.com/hidelab/diffcoexp","last_synced_at":"2025-09-01T01:26:08.533Z","status":"error","issues_count":2,"pull_requests_count":3,"avg_time_to_close_issue":60351.0,"avg_time_to_close_pull_request":13624.666666666668,"issues_closed_count":1,"pull_requests_closed_count":3,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":1.0,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-10-23T00:12:56.030Z","updated_at":"2025-09-01T01:26:08.534Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hidelab%2Fdiffcoexp/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":3},"issue_authors":{"jarcasariego":1,"dktanwar":1},"pull_request_authors":{"wenbinwei":1,"martin-g":1,"dktanwar":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10098650,"issues_count":31447165,"pull_requests_count":97330651,"authors_count":10702032,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[],"score":15.255042322466581,"created_at":"2025-09-08T10:45:07.308Z","updated_at":"2025-10-07T08:24:05.208Z","avatar_url":"https://github.com/hidelab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","gene","ontology","proteomics","genomics","u24ca289073","mutations","bioconductor","bioinformatics","data-structure"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61441","html_url":"https://science.ecosyste.ms/projects/61441"}