{"id":61447,"name":"Structstrings","description":":package: Structstrings: implementation of Biostrings to work with dot bracket annotations","url":"https://github.com/felixernst/structstrings","last_synced_at":"2025-09-08T12:30:42.083Z","repository":{"id":73649346,"uuid":"163862609","full_name":"FelixErnst/Structstrings","owner":"FelixErnst","description":":package: Structstrings: implementation of Biostrings to work with dot bracket annotations","archived":false,"fork":false,"pushed_at":"2024-11-02T00:12:51.000Z","size":409,"stargazers_count":5,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-09-03T13:54:03.805Z","etag":null,"topics":["bioconductor","r","rna","rna-structural-analysis","rna-structure","sequences","structures"],"latest_commit_sha":null,"homepage":"https://felixernst.github.io/Structstrings/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/FelixErnst.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-01-02T16:10:34.000Z","updated_at":"2025-03-19T14:53:20.000Z","dependencies_parsed_at":null,"dependency_job_id":"b0382b4e-1647-42c5-ae7b-27c5c86c1776","html_url":"https://github.com/FelixErnst/Structstrings","commit_stats":{"total_commits":96,"total_committers":4,"mean_commits":24.0,"dds":0.5104166666666667,"last_synced_commit":"0f3c7b585fc54ffa1aa25723fdc0a6a1ebde266a"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/FelixErnst/Structstrings","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FelixErnst","download_url":"https://codeload.github.com/FelixErnst/Structstrings/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185185,"owners_count":25237337,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"FelixErnst","name":"Felix Ernst","uuid":"17824332","kind":"user","description":"\r\n","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/17824332?u=5765387419d77d982c6dd77dc20dd35261177aa2\u0026v=4","repositories_count":35,"last_synced_at":"2023-08-04T08:20:53.813Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/FelixErnst","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-22T07:34:56.741Z","updated_at":"2023-08-04T08:20:54.014Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FelixErnst","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FelixErnst/repositories"},"packages":[{"id":8420827,"name":"Structstrings","ecosystem":"bioconductor","description":"Implementation of the dot bracket annotations with Biostrings","homepage":"https://github.com/FelixErnst/Structstrings ","licenses":"Artistic-2.0","normalized_licenses":["Artistic-2.0"],"repository_url":"https://github.com/FelixErnst/Structstrings","keywords_array":["Alignment","DataImport","DataRepresentation","Infrastructure","SequenceMatching","Sequencing","Software"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T15:03:29.232Z","latest_release_published_at":"2025-05-11T05:45:47.014Z","latest_release_number":"1.24.0","last_synced_at":"2025-09-03T05:06:56.773Z","created_at":"2023-10-12T15:03:29.099Z","updated_at":"2025-09-03T13:54:04.088Z","registry_url":"https://bioconductor.org/packages/Structstrings","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/Structstrings/inst/doc/Structstrings.pdf","metadata":{},"repo_metadata":{"id":73649346,"uuid":"163862609","full_name":"FelixErnst/Structstrings","owner":"FelixErnst","description":":package: Structstrings: implementation of Biostrings to work with dot bracket annotations","archived":false,"fork":false,"pushed_at":"2024-11-02T00:12:51.000Z","size":409,"stargazers_count":5,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-08-02T06:38:43.494Z","etag":null,"topics":["bioconductor","r","rna","rna-structural-analysis","rna-structure","sequences","structures"],"latest_commit_sha":null,"homepage":"https://felixernst.github.io/Structstrings/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/FelixErnst.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-01-02T16:10:34.000Z","updated_at":"2025-03-19T14:53:20.000Z","dependencies_parsed_at":null,"dependency_job_id":"b0382b4e-1647-42c5-ae7b-27c5c86c1776","html_url":"https://github.com/FelixErnst/Structstrings","commit_stats":{"total_commits":96,"total_committers":4,"mean_commits":24.0,"dds":0.5104166666666667,"last_synced_commit":"0f3c7b585fc54ffa1aa25723fdc0a6a1ebde266a"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/FelixErnst/Structstrings","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FelixErnst","download_url":"https://codeload.github.com/FelixErnst/Structstrings/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273453704,"owners_count":25108473,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"FelixErnst","name":"Felix Ernst","uuid":"17824332","kind":"user","description":"\r\n","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/17824332?u=5765387419d77d982c6dd77dc20dd35261177aa2\u0026v=4","repositories_count":35,"last_synced_at":"2023-08-04T08:20:53.813Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/FelixErnst","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-22T07:34:56.741Z","updated_at":"2023-08-04T08:20:54.014Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FelixErnst","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/FelixErnst/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-09-03T13:54:04.088Z","dependent_packages_count":3,"downloads":14793,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":65.60538116591928,"dependent_repos_count":0.0,"dependent_packages_count":11.031390134529149,"stargazers_count":29.00763358778626,"forks_count":19.753086419753085,"docker_downloads_count":null,"average":25.079498261597557},"purl":"pkg:bioconductor/Structstrings","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/Structstrings","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/Structstrings","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/Structstrings/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-02T05:48:44.558Z","issues_count":1,"pull_requests_count":2,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":10.0,"issues_closed_count":0,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":2.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/issues","maintainers":[{"login":"FelixErnst","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/FelixErnst"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/Structstrings/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/Structstrings/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/Structstrings/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/Structstrings/related_packages","maintainers":[{"uuid":"felix.gm.ernst@outlook.com","login":null,"name":"Felix G.M. Ernst","email":"felix.gm.ernst@outlook.com","url":null,"packages_count":10,"html_url":null,"role":null,"created_at":"2023-11-25T16:22:26.824Z","updated_at":"2023-11-25T16:22:26.824Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/felix.gm.ernst@outlook.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403499,"full_name":"FelixErnst/Structstrings","default_branch":"devel","committers":[{"name":"FelixErnst","email":"felix.gm.ernst@outlook.com","login":"FelixErnst","count":89},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":10},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":4}],"total_commits":117,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":29.25,"dds":0.23931623931623935,"past_year_committers":[{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":2},{"name":"FelixErnst","email":"felix.gm.ernst@outlook.com","login":"FelixErnst","count":1}],"past_year_total_commits":3,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":1.5,"past_year_dds":0.33333333333333337,"last_synced_at":"2025-06-01T12:58:25.194Z","last_synced_commit":"b17276edf970d5bc6a8be5f36f61d3ce0ba83ba8","created_at":"2023-10-25T13:16:13.905Z","updated_at":"2025-06-01T12:58:25.194Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.254Z","repositories_count":5479765,"commits_count":853310273,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"FelixErnst/Structstrings","html_url":"https://github.com/FelixErnst/Structstrings","last_synced_at":"2025-08-02T05:48:44.558Z","status":"error","issues_count":1,"pull_requests_count":2,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":10.0,"issues_closed_count":0,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":2.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-05-01T23:24:10.020Z","updated_at":"2025-08-02T05:48:44.558Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/FelixErnst%2FStructstrings/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{"OWNER":2},"issue_authors":{"brendanf":1},"pull_request_authors":{"FelixErnst":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-22T00:00:16.838Z","repositories_count":8477485,"issues_count":15901687,"pull_requests_count":37901090,"authors_count":5664582,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"FelixErnst","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/FelixErnst"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"IssueCommentEvent":2,"PushEvent":2,"CreateEvent":1},"last_year":{"WatchEvent":1,"IssueCommentEvent":2,"PushEvent":2,"CreateEvent":1}},"keywords":["bioconductor","r","rna","rna-structural-analysis","rna-structure","sequences","structures"],"dependencies":[],"score":12.78023356685048,"created_at":"2025-09-08T10:45:07.322Z","updated_at":"2025-10-07T08:24:05.335Z","avatar_url":"https://github.com/FelixErnst.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/doi:10.18129/B9.bioc.Structstrings","https://doi.org/10.1186/1748-7188-6-26","https://doi.org/10.1093/nar/25.5.955","https://doi.org/10.1093/nar/gkn772"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","ontology","gene","bioinformatics","microbiome","proteomics","u24ca289073","microbiology","human-microbiome","hitchip-atlas"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61447","html_url":"https://science.ecosyste.ms/projects/61447"}