{"id":61448,"name":"packFinder","description":"A package for the de novo discovery of pack-TYPE transposons","url":"https://github.com/jackgisby/packfinder","last_synced_at":"2025-09-08T12:30:25.290Z","repository":{"id":44967842,"uuid":"201337387","full_name":"jackgisby/packFinder","owner":"jackgisby","description":"A package for the de novo discovery of pack-TYPE transposons","archived":false,"fork":false,"pushed_at":"2022-07-18T10:21:25.000Z","size":4653,"stargazers_count":7,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-08-01T18:17:14.947Z","etag":null,"topics":["bioinformatics","r","text-mining"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jackgisby.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-08-08T21:04:47.000Z","updated_at":"2025-02-05T09:05:25.000Z","dependencies_parsed_at":"2022-07-13T03:20:30.073Z","dependency_job_id":null,"html_url":"https://github.com/jackgisby/packFinder","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/jackgisby/packFinder","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jackgisby","download_url":"https://codeload.github.com/jackgisby/packFinder/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185213,"owners_count":25237341,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"jackgisby","name":"Jack Gisby","uuid":"43494691","kind":"user","description":"PhD candidate applying and developing data science approaches to investigate disease.","email":"","website":null,"location":"London","twitter":"jack_gisby","company":"Imperial College London","icon_url":"https://avatars.githubusercontent.com/u/43494691?u=478614b39aa1a364ac2f67b8866244d0f7ee13df\u0026v=4","repositories_count":4,"last_synced_at":"2023-03-09T07:40:44.441Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/jackgisby","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-03-09T07:40:44.456Z","updated_at":"2023-03-09T07:40:44.456Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jackgisby","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jackgisby/repositories"},"packages":[{"id":8420246,"name":"packFinder","ecosystem":"bioconductor","description":"de novo Annotation of Pack-TYPE Transposable Elements","homepage":"https://github.com/jackgisby/packFinder ","licenses":"GPL-2","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/jackgisby/packFinder","keywords_array":["Annotation","Genetics","SequenceMatching","Software"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:50:40.319Z","latest_release_published_at":"2025-04-28T16:02:52.492Z","latest_release_number":"1.20.0","last_synced_at":"2025-08-01T17:46:27.693Z","created_at":"2023-10-12T14:50:39.496Z","updated_at":"2025-08-01T17:47:06.608Z","registry_url":"https://bioconductor.org/packages/packFinder","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/packFinder/inst/doc/packFinder.pdf","metadata":{},"repo_metadata":{"id":44967842,"uuid":"201337387","full_name":"jackgisby/packFinder","owner":"jackgisby","description":"A package for the de novo discovery of pack-TYPE transposons","archived":false,"fork":false,"pushed_at":"2022-07-18T10:21:25.000Z","size":4653,"stargazers_count":7,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-06-28T18:09:33.341Z","etag":null,"topics":["bioinformatics","r","text-mining"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jackgisby.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-08-08T21:04:47.000Z","updated_at":"2025-02-05T09:05:25.000Z","dependencies_parsed_at":"2022-07-13T03:20:30.073Z","dependency_job_id":null,"html_url":"https://github.com/jackgisby/packFinder","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/jackgisby/packFinder","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jackgisby","download_url":"https://codeload.github.com/jackgisby/packFinder/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":268271496,"owners_count":24223692,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-01T02:00:08.611Z","response_time":67,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"jackgisby","name":"Jack Gisby","uuid":"43494691","kind":"user","description":"PhD candidate applying and developing data science approaches to investigate disease.","email":"","website":null,"location":"London","twitter":"jack_gisby","company":"Imperial College London","icon_url":"https://avatars.githubusercontent.com/u/43494691?u=478614b39aa1a364ac2f67b8866244d0f7ee13df\u0026v=4","repositories_count":4,"last_synced_at":"2023-03-09T07:40:44.441Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/jackgisby","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-03-09T07:40:44.456Z","updated_at":"2023-03-09T07:40:44.456Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jackgisby","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jackgisby/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-01T17:47:06.608Z","dependent_packages_count":0,"downloads":8874,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":77.71300448430493,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":12.345679012345679,"forks_count":18.39080459770115,"docker_downloads_count":null,"average":21.689897618870354},"purl":"pkg:bioconductor/packFinder","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/packFinder","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/packFinder","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/packFinder/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-06-28T18:05:54.875Z","issues_count":1,"pull_requests_count":16,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":18.5625,"issues_closed_count":0,"pull_requests_closed_count":16,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":1.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/issues","maintainers":[{"login":"jackgisby","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jackgisby"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/packFinder/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/packFinder/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/packFinder/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/packFinder/related_packages","maintainers":[{"uuid":"jackgisby@gmail.com","login":null,"name":"Jack Gisby","email":"jackgisby@gmail.com","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-11-20T12:48:04.743Z","updated_at":"2023-11-20T12:48:04.743Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/jackgisby@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403193,"full_name":"jackgisby/packFinder","default_branch":"master","committers":[{"name":"jackgisby","email":"43494691+jackgisby","login":"jackgisby","count":170},{"name":"Jack Gisby","email":"jackgisby@gmail.com","login":null,"count":34},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":10},{"name":"Jack Gisby (MSci Biochem w Prof Pla FT)","email":"JSG653@student.bham.ac.uk","login":null,"count":3}],"total_commits":217,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":54.25,"dds":0.21658986175115202,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:15:56.011Z","last_synced_commit":"068bad218f049e389608dba10c348b581daa9449","created_at":"2023-10-25T13:15:50.627Z","updated_at":"2023-10-25T13:15:56.011Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483146,"commits_count":854228848,"contributors_count":31137076,"owners_count":908396,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"jackgisby/packFinder","html_url":"https://github.com/jackgisby/packFinder","last_synced_at":"2025-08-01T20:47:20.424Z","status":"error","issues_count":1,"pull_requests_count":16,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":18.5625,"issues_closed_count":0,"pull_requests_closed_count":16,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":1.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-05-22T00:09:17.387Z","updated_at":"2025-08-30T19:07:06.744Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jackgisby%2FpackFinder/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{"OWNER":16},"issue_authors":{"epi-lhe":1},"pull_request_authors":{"jackgisby":16},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.204Z","repositories_count":8443754,"issues_count":20617807,"pull_requests_count":51654143,"authors_count":7771160,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"epi-lhe":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"jackgisby","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jackgisby"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":2,"IssueCommentEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":2,"IssueCommentEvent":1}},"keywords":["bioinformatics","r","text-mining"],"dependencies":[],"score":12.556729517143344,"created_at":"2025-09-08T10:45:07.325Z","updated_at":"2025-10-07T08:24:05.353Z","avatar_url":"https://github.com/jackgisby.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1371/journal.pgen.1010078"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/61448","html_url":"https://science.ecosyste.ms/projects/61448"}