{"id":61464,"name":"cosmosR","description":"COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets. ","url":"https://github.com/saezlab/cosmosr","last_synced_at":"2025-09-08T12:31:05.643Z","repository":{"id":43177282,"uuid":"247057950","full_name":"saezlab/cosmosR","owner":"saezlab","description":"COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets. ","archived":false,"fork":false,"pushed_at":"2025-07-06T09:13:52.000Z","size":54175,"stargazers_count":62,"open_issues_count":7,"forks_count":16,"subscribers_count":9,"default_branch":"master","last_synced_at":"2025-08-07T09:55:29.401Z","etag":null,"topics":["data-integration","metabolomic-data","network-modelling","phosphoproteomics","proteomics","transcriptomics"],"latest_commit_sha":null,"homepage":"https://saezlab.github.io/cosmosR/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/saezlab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-03-13T11:39:20.000Z","updated_at":"2025-07-20T10:54:21.000Z","dependencies_parsed_at":"2023-02-08T19:01:08.179Z","dependency_job_id":"329976f7-c85d-459d-a320-ecc84ce4230f","html_url":"https://github.com/saezlab/cosmosR","commit_stats":{"total_commits":341,"total_committers":12,"mean_commits":"28.416666666666668","dds":0.6598240469208212,"last_synced_commit":"c5e29e0c1015be66d594837c1d8882f6c9cdcfd8"},"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/saezlab/cosmosR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab","download_url":"https://codeload.github.com/saezlab/cosmosR/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185245,"owners_count":25237350,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"saezlab","name":"Saez Lab","uuid":"9979042","kind":"organization","description":"Institute for Computational Biomedicine - Julio Saez-Rodriguez's group","email":"pub.saez@uni-heidelberg.de","website":"saezlab.org","location":"Germany","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/9979042?v=4","repositories_count":241,"last_synced_at":"2024-04-16T01:19:34.095Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/saezlab","funding_links":[],"total_stars":1577,"followers":222,"following":0,"created_at":"2022-11-07T05:25:47.219Z","updated_at":"2024-04-16T01:20:36.600Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab/repositories"},"packages":[{"id":8419114,"name":"cosmosR","ecosystem":"bioconductor","description":"COSMOS (Causal Oriented Search of Multi-Omic Space)","homepage":"https://github.com/saezlab/COSMOSR ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/saezlab/COSMOSR","keywords_array":["CellBiology","GeneSignaling","Metabolomics","Network","Pathways","Proteomics","Software","Transcriptomics"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:27:11.362Z","latest_release_published_at":"2025-04-19T07:58:25.955Z","latest_release_number":"1.16.0","last_synced_at":"2025-08-07T09:52:26.157Z","created_at":"2023-10-12T14:27:10.196Z","updated_at":"2025-08-07T09:55:44.942Z","registry_url":"https://bioconductor.org/packages/cosmosR","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/cosmosR/inst/doc/cosmosR.pdf","metadata":{},"repo_metadata":{"id":43177282,"uuid":"247057950","full_name":"saezlab/cosmosR","owner":"saezlab","description":"COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets. ","archived":false,"fork":false,"pushed_at":"2025-07-06T09:13:52.000Z","size":54175,"stargazers_count":61,"open_issues_count":6,"forks_count":16,"subscribers_count":10,"default_branch":"master","last_synced_at":"2025-07-06T09:32:28.730Z","etag":null,"topics":["data-integration","metabolomic-data","network-modelling","phosphoproteomics","proteomics","transcriptomics"],"latest_commit_sha":null,"homepage":"https://saezlab.github.io/cosmosR/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/saezlab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-03-13T11:39:20.000Z","updated_at":"2025-07-06T09:04:40.000Z","dependencies_parsed_at":"2023-02-08T19:01:08.179Z","dependency_job_id":"329976f7-c85d-459d-a320-ecc84ce4230f","html_url":"https://github.com/saezlab/cosmosR","commit_stats":{"total_commits":341,"total_committers":12,"mean_commits":"28.416666666666668","dds":0.6598240469208212,"last_synced_commit":"c5e29e0c1015be66d594837c1d8882f6c9cdcfd8"},"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/saezlab/cosmosR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab","download_url":"https://codeload.github.com/saezlab/cosmosR/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":269236775,"owners_count":24383240,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-07T02:00:09.698Z","response_time":73,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"saezlab","name":"Saez Lab","uuid":"9979042","kind":"organization","description":"Institute for Computational Biomedicine - Julio Saez-Rodriguez's group","email":"pub.saez@uni-heidelberg.de","website":"saezlab.org","location":"Germany","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/9979042?v=4","repositories_count":241,"last_synced_at":"2024-04-16T01:19:34.095Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/saezlab","funding_links":[],"total_stars":1577,"followers":222,"following":0,"created_at":"2022-11-07T05:25:47.219Z","updated_at":"2024-04-16T01:20:36.600Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab/repositories"},"tags":[{"name":"MOFACOSMOS_biorxiv","sha":"58b7dbdc106b66c6234b1af0f8ef8c49762da827","kind":"commit","published_at":"2024-06-24T08:07:24.000Z","download_url":"https://codeload.github.com/saezlab/cosmosR/tar.gz/MOFACOSMOS_biorxiv","html_url":"https://github.com/saezlab/cosmosR/releases/tag/MOFACOSMOS_biorxiv","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/saezlab/cosmosR@MOFACOSMOS_biorxiv","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/MOFACOSMOS_biorxiv","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/MOFACOSMOS_biorxiv/manifests"},{"name":"v.1.5.2.1","sha":"c5e29e0c1015be66d594837c1d8882f6c9cdcfd8","kind":"commit","published_at":"2023-09-15T09:13:06.000Z","download_url":"https://codeload.github.com/saezlab/cosmosR/tar.gz/v.1.5.2.1","html_url":"https://github.com/saezlab/cosmosR/releases/tag/v.1.5.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/saezlab/cosmosR@v.1.5.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/v.1.5.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/v.1.5.2.1/manifests"},{"name":"v1.5.2","sha":"84e0812fde497190cb4e5580cdf845e76542e67a","kind":"commit","published_at":"2023-05-10T09:25:28.000Z","download_url":"https://codeload.github.com/saezlab/cosmosR/tar.gz/v1.5.2","html_url":"https://github.com/saezlab/cosmosR/releases/tag/v1.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/saezlab/cosmosR@v1.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/v1.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/v1.5.2/manifests"},{"name":"v0.1","sha":"d6b7a3e76e96e38557e898c549ff702cea1717c7","kind":"commit","published_at":"2020-05-05T11:20:45.000Z","download_url":"https://codeload.github.com/saezlab/cosmosR/tar.gz/v0.1","html_url":"https://github.com/saezlab/cosmosR/releases/tag/v0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/saezlab/cosmosR@v0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/v0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FcosmosR/tags/v0.1/manifests"}]},"repo_metadata_updated_at":"2025-08-07T09:55:44.941Z","dependent_packages_count":0,"downloads":8982,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":81.77676537585421,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":27.258921791951405},"purl":"pkg:bioconductor/cosmosR","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/cosmosR","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/cosmosR","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/cosmosR/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-06T09:45:20.343Z","issues_count":24,"pull_requests_count":17,"avg_time_to_close_issue":9230258.588235294,"avg_time_to_close_pull_request":1640059.2352941176,"issues_closed_count":17,"pull_requests_closed_count":17,"pull_request_authors_count":6,"issue_authors_count":18,"avg_comments_per_issue":3.25,"avg_comments_per_pull_request":0.6470588235294118,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":6,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":3985532.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":2.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Fcosmosr/issues","maintainers":[{"login":"adugourd","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adugourd"},{"login":"christianholland","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/christianholland"},{"login":"gabora","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gabora"},{"login":"martingarridorc","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/martingarridorc"},{"login":"deeenes","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/deeenes"}],"active_maintainers":[{"login":"adugourd","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adugourd"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cosmosR/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cosmosR/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cosmosR/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cosmosR/related_packages","maintainers":[{"uuid":"attila.gabor@uni-heidelberg.de","login":null,"name":"Attila Gabor","email":"attila.gabor@uni-heidelberg.de","url":null,"packages_count":5,"html_url":null,"role":null,"created_at":"2023-11-14T12:38:40.773Z","updated_at":"2023-11-14T12:38:40.773Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/attila.gabor@uni-heidelberg.de/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403146,"full_name":"saezlab/COSMOSR","default_branch":"master","committers":[{"name":"adugourd","email":"adugourd@ukaachen.de","login":"adugourd","count":137},{"name":"Attila Gabor","email":"gabor.attila87@gmail.com","login":"gabora","count":126},{"name":"Katharina Zirngibl","email":"kzngbl@gmail.com","login":"katharinazirngibl","count":49},{"name":"Christian","email":"cholland2408@gmail.com","login":"christianholland","count":19},{"name":"Aurelien Dugourd","email":"Aurelien@Aureliens-Macbook.local","login":null,"count":9},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":6},{"name":"Caroline2501","email":"c.lohoff97@gmx.de","login":"clohoff","count":5},{"name":"deeenes","email":"turei.denes@gmail.com","login":"deeenes","count":5},{"name":"Martin Garrido Rodriguez-Cordoba","email":"mgrcprof@gmail.com","login":"martingarridorc","count":4},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":4},{"name":"Christian Holland","email":"christian.holland@bioquant.uni-heidelberg.de","login":null,"count":1}],"total_commits":365,"total_committers":11,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":33.18181818181818,"dds":0.6246575342465753,"past_year_committers":[{"name":"Aurelien Dugourd","email":"bf242@uni-heidelberg.de","login":"adugourd","count":12},{"name":"Attila Gabor","email":"attila.gabor@uni-heidelberg.de","login":"gabora","count":7}],"past_year_total_commits":19,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":9.5,"past_year_dds":0.368421052631579,"last_synced_at":"2025-05-19T23:54:46.259Z","last_synced_commit":"ef9d5aacc056c79c730382974a98b7d04e62c69d","created_at":"2023-10-25T13:15:39.998Z","updated_at":"2025-05-19T23:54:46.307Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FCOSMOSR/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483146,"commits_count":854228848,"contributors_count":31137076,"owners_count":908396,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"saezlab/cosmosr","html_url":"https://github.com/saezlab/cosmosr","last_synced_at":"2025-08-08T03:23:50.057Z","status":"error","issues_count":24,"pull_requests_count":17,"avg_time_to_close_issue":9230258.588235294,"avg_time_to_close_pull_request":1640059.2352941176,"issues_closed_count":17,"pull_requests_closed_count":17,"pull_request_authors_count":6,"issue_authors_count":18,"avg_comments_per_issue":3.25,"avg_comments_per_pull_request":0.6470588235294118,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":6,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":3985532.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":2.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-01-22T07:34:05.145Z","updated_at":"2025-09-02T05:12:47.947Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Fcosmosr","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Fcosmosr/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":19,"MEMBER":3},"pull_request_author_associations_count":{"MEMBER":12,"COLLABORATOR":4,"CONTRIBUTOR":1},"issue_authors":{"narmadabc":2,"an-altosian":2,"SwagatikaSahoo2023":2,"adugourd":2,"CatherM":1,"Kriti1594":1,"jtorrejon81":1,"LonnekeNouwen":1,"samuelbunga":1,"wmoldham":1,"jytan01":1,"transform66":1,"dilipgosar":1,"anu-bioinfo":1,"Eirinits":1,"kaupuks":1,"sarahbonnin":1,"gabora":1},"pull_request_authors":{"adugourd":8,"christianholland":4,"gabora":2,"martingarridorc":1,"clohoff":1,"deeenes":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10165784,"issues_count":31999265,"pull_requests_count":100269215,"authors_count":10729006,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"an-altosian":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"adugourd","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adugourd"},{"login":"christianholland","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/christianholland"},{"login":"gabora","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gabora"},{"login":"martingarridorc","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/martingarridorc"},{"login":"deeenes","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/deeenes"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":5,"IssueCommentEvent":2,"PushEvent":5,"ForkEvent":1},"last_year":{"WatchEvent":5,"IssueCommentEvent":2,"PushEvent":5,"ForkEvent":1}},"keywords":["data-integration","metabolomic-data","network-modelling","phosphoproteomics","proteomics","transcriptomics"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-24T18:06:42.571Z","updated_at":"2022-09-24T18:06:42.571Z","repository_link":"https://github.com/saezlab/cosmosR/blob/master/DESCRIPTION","dependencies":[{"id":6047182679,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.1","direct":true,"kind":"depends","optional":false},{"id":6047182685,"package_name":"CARNIVAL","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182687,"package_name":"dorothea","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182689,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182691,"package_name":"GSEABase","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182693,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182695,"package_name":"progress","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182697,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182699,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182700,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182702,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182704,"package_name":"visNetwork","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":6047182706,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6047182710,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6047182712,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6047182714,"package_name":"piano","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":6047182716,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/check-bioc.yml","sha":null,"kind":"manifest","created_at":"2023-02-08T19:01:08.137Z","updated_at":"2023-02-08T19:01:08.137Z","repository_link":"https://github.com/saezlab/cosmosR/blob/master/.github/workflows/check-bioc.yml","dependencies":[{"id":7465179815,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7465179816,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7465179817,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7465179818,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7465179819,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":7465179820,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":15.735090958624838,"created_at":"2025-09-08T10:45:07.367Z","updated_at":"2025-10-07T08:24:05.641Z","avatar_url":"https://github.com/saezlab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","bioconductor","gene","ontology","biology","intercellular","modular","molecular-biology","multiview","spatial-transcriptomics"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61464","html_url":"https://science.ecosyste.ms/projects/61464"}