{"id":61524,"name":"SimBu","description":"Simulate pseudo-bulk RNAseq samples from scRNAseq expression data","url":"https://github.com/omnideconv/simbu","last_synced_at":"2025-09-08T12:31:58.600Z","repository":{"id":37540294,"uuid":"367392069","full_name":"omnideconv/SimBu","owner":"omnideconv","description":"Simulate pseudo-bulk RNAseq samples from scRNAseq expression data","archived":false,"fork":false,"pushed_at":"2025-08-04T17:09:50.000Z","size":19508,"stargazers_count":17,"open_issues_count":7,"forks_count":1,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-08-31T05:46:18.344Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://omnideconv.org/SimBu/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/omnideconv.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-05-14T14:43:10.000Z","updated_at":"2025-05-14T08:56:38.000Z","dependencies_parsed_at":"2023-02-17T18:40:31.968Z","dependency_job_id":"93f439ab-c7dd-4a0e-a298-9daee8ba33c5","html_url":"https://github.com/omnideconv/SimBu","commit_stats":{"total_commits":222,"total_committers":10,"mean_commits":22.2,"dds":0.3153153153153153,"last_synced_commit":"ee347a5f23793796aab08a5411a46d8981652a39"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/omnideconv/SimBu","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/omnideconv","download_url":"https://codeload.github.com/omnideconv/SimBu/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185503,"owners_count":25237409,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"omnideconv","name":"omnideconv","uuid":"88080437","kind":"organization","description":"","email":null,"website":"https://omnideconv.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/88080437?v=4","repositories_count":9,"last_synced_at":"2023-03-05T07:22:58.901Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/omnideconv","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T08:17:12.214Z","updated_at":"2023-03-05T07:22:58.919Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/omnideconv","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/omnideconv/repositories"},"packages":[{"id":8420717,"name":"SimBu","ecosystem":"bioconductor","description":"Simulate Bulk RNA-seq Datasets from Single-Cell Datasets","homepage":"https://github.com/omnideconv/SimBu ","licenses":"GPL-3 + file LICENSE","normalized_licenses":["AML"],"repository_url":"https://github.com/omnideconv/SimBu","keywords_array":["RNASeq","SingleCell","Software"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T15:00:53.200Z","latest_release_published_at":"2025-04-18T19:28:03.736Z","latest_release_number":"1.10.0","last_synced_at":"2025-08-13T09:49:11.866Z","created_at":"2023-10-12T15:00:51.150Z","updated_at":"2025-08-13T17:36:34.711Z","registry_url":"https://bioconductor.org/packages/SimBu","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/SimBu/inst/doc/SimBu.pdf","metadata":{},"repo_metadata":{"id":37540294,"uuid":"367392069","full_name":"omnideconv/SimBu","owner":"omnideconv","description":"Simulate pseudo-bulk RNAseq samples from scRNAseq expression data","archived":false,"fork":false,"pushed_at":"2025-08-04T17:09:50.000Z","size":19508,"stargazers_count":17,"open_issues_count":7,"forks_count":1,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-08-13T09:44:12.810Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://omnideconv.org/SimBu/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/omnideconv.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-05-14T14:43:10.000Z","updated_at":"2025-05-14T08:56:38.000Z","dependencies_parsed_at":"2023-02-17T18:40:31.968Z","dependency_job_id":"93f439ab-c7dd-4a0e-a298-9daee8ba33c5","html_url":"https://github.com/omnideconv/SimBu","commit_stats":{"total_commits":222,"total_committers":10,"mean_commits":22.2,"dds":0.3153153153153153,"last_synced_commit":"ee347a5f23793796aab08a5411a46d8981652a39"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/omnideconv/SimBu","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/omnideconv","download_url":"https://codeload.github.com/omnideconv/SimBu/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270281805,"owners_count":24557902,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-13T02:00:09.904Z","response_time":66,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"omnideconv","name":"omnideconv","uuid":"88080437","kind":"organization","description":"","email":null,"website":"https://omnideconv.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/88080437?v=4","repositories_count":9,"last_synced_at":"2023-03-05T07:22:58.901Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/omnideconv","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T08:17:12.214Z","updated_at":"2023-03-05T07:22:58.919Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/omnideconv","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/omnideconv/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-13T17:36:34.710Z","dependent_packages_count":0,"downloads":6884,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":94.57399103139014,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":9.848484848484848,"forks_count":18.39080459770115,"docker_downloads_count":null,"average":24.562656095515226},"purl":"pkg:bioconductor/SimBu","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/SimBu","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/SimBu","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/SimBu/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-13T08:55:51.674Z","issues_count":37,"pull_requests_count":16,"avg_time_to_close_issue":9392884.09375,"avg_time_to_close_pull_request":677865.5714285715,"issues_closed_count":32,"pull_requests_closed_count":14,"pull_request_authors_count":4,"issue_authors_count":12,"avg_comments_per_issue":7.4324324324324325,"avg_comments_per_pull_request":0.875,"merged_pull_requests_count":12,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/issues","maintainers":[{"login":"alex-d13","count":25,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alex-d13"},{"login":"grst","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/grst"},{"login":"FFinotello","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/FFinotello"},{"login":"federicomarini","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/federicomarini"},{"login":"mlist","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mlist"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SimBu/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SimBu/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SimBu/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SimBu/related_packages","maintainers":[{"uuid":"alex.dietrich@tum.de","login":null,"name":"Alexander Dietrich","email":"alex.dietrich@tum.de","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-07T01:22:33.232Z","updated_at":"2023-11-07T01:22:33.232Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/alex.dietrich@tum.de/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403446,"full_name":"omnideconv/SimBu","default_branch":"main","committers":[{"name":"Alexander Dietrich","email":"adietrich@norm.exbio.wzw.tum.de","login":null,"count":152},{"name":"alex-d13","email":"dietrich.alexander1310@gmail.com","login":null,"count":23},{"name":"Alexander Dietrich","email":"40594032+alex-d13","login":"alex-d13","count":19},{"name":"Gregor Sturm","email":"mail@gregor-sturm.de","login":null,"count":10},{"name":"Alexander Dietrich","email":"adietrich@alfred.exbio.wzw.tum.de","login":null,"count":7},{"name":"Federico Marini","email":"marinif@uni-mainz.de","login":null,"count":4},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"pre-commit-ci[bot]","email":"66853113+pre-commit-ci[bot]","login":"pre-commit-ci[bot]","count":2},{"name":"omnideconv-bot","email":"omnideconv-bot","login":"omnideconv-bot","count":2},{"name":"grst","email":"grst","login":"grst","count":1}],"total_commits":222,"total_committers":10,"total_bot_commits":2,"total_bot_committers":1,"mean_commits":22.2,"dds":0.3153153153153153,"past_year_committers":[{"name":"Alexander Dietrich","email":"adietrich@norm.exbio.wzw.tum.de","login":null,"count":13},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"past_year_total_commits":15,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":7.5,"past_year_dds":0.1333333333333333,"last_synced_at":"2023-10-25T13:17:00.892Z","last_synced_commit":"ee347a5f23793796aab08a5411a46d8981652a39","created_at":"2023-10-25T13:16:10.913Z","updated_at":"2023-10-25T13:17:00.893Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-29T00:00:19.078Z","repositories_count":5479764,"commits_count":853309641,"contributors_count":31095223,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"omnideconv/SimBu","html_url":"https://github.com/omnideconv/SimBu","last_synced_at":"2025-08-14T05:43:18.341Z","status":"error","issues_count":37,"pull_requests_count":16,"avg_time_to_close_issue":9392884.09375,"avg_time_to_close_pull_request":677865.5714285715,"issues_closed_count":32,"pull_requests_closed_count":14,"pull_request_authors_count":4,"issue_authors_count":12,"avg_comments_per_issue":7.4324324324324325,"avg_comments_per_pull_request":0.875,"merged_pull_requests_count":12,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-04-24T00:09:50.075Z","updated_at":"2025-09-01T22:47:07.422Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/omnideconv%2FSimBu/issues","issue_labels_count":{"bug":3,"enhancement":2,"question":2},"pull_request_labels_count":{},"issue_author_associations_count":{"COLLABORATOR":27,"NONE":9},"pull_request_author_associations_count":{"COLLABORATOR":16,"CONTRIBUTOR":1},"issue_authors":{"alex-d13":13,"grst":8,"FFinotello":5,"ZheFrench":2,"mea2712":1,"MengjurJ":1,"orange-whale":1,"arielah":1,"slieped":1,"AlmogAngel":1,"mlist":1,"saketkc":1},"pull_request_authors":{"alex-d13":11,"federicomarini":4,"pre-commit-ci[bot]":1,"grst":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10026604,"issues_count":30445490,"pull_requests_count":90339401,"authors_count":10305781,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"alex-d13","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alex-d13"},{"login":"grst","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/grst"},{"login":"FFinotello","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/FFinotello"},{"login":"federicomarini","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/federicomarini"},{"login":"mlist","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mlist"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":5,"PushEvent":13,"CreateEvent":1},"last_year":{"WatchEvent":5,"PushEvent":13,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-07-12T16:22:02.686Z","updated_at":"2022-07-12T16:22:02.686Z","repository_link":"https://github.com/omnideconv/SimBu/blob/devel/DESCRIPTION","dependencies":[{"id":169189293,"package_name":"basilisk","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189294,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189295,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189296,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189297,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189298,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189299,"package_name":"Matrix","ecosystem":"cran","requirements":"\u003e= 1.3.3","direct":true,"kind":"imports","optional":false},{"id":169189300,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189301,"package_name":"phyloseq","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189302,"package_name":"proxyC","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189303,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189304,"package_name":"RCurl","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189305,"package_name":"reticulate","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189306,"package_name":"sparseMatrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189307,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189308,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":169189309,"package_name":"curl","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":169189310,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":169189311,"package_name":"matrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":169189312,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":169189313,"package_name":"Seurat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":169189314,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/bioc_check.yml","sha":null,"kind":"manifest","created_at":"2023-02-17T18:40:28.731Z","updated_at":"2023-02-17T18:40:28.731Z","repository_link":"https://github.com/omnideconv/SimBu/blob/devel/.github/workflows/bioc_check.yml","dependencies":[{"id":7744308942,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744308943,"package_name":"insightsengineering/bioc-check-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pkgdown.yml","sha":null,"kind":"manifest","created_at":"2023-02-17T18:40:29.556Z","updated_at":"2023-02-17T18:40:29.556Z","repository_link":"https://github.com/omnideconv/SimBu/blob/devel/.github/workflows/pkgdown.yml","dependencies":[{"id":7744310632,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310633,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310634,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310635,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310636,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"4.1.4","direct":true,"kind":"composite","optional":false},{"id":7744310637,"package_name":"nwtgck/actions-netlify","ecosystem":"actions","requirements":"v1.2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/roxygenize.yml","sha":null,"kind":"manifest","created_at":"2023-02-17T18:40:29.678Z","updated_at":"2023-02-17T18:40:29.678Z","repository_link":"https://github.com/omnideconv/SimBu/blob/devel/.github/workflows/roxygenize.yml","dependencies":[{"id":7744310656,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310657,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310658,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310659,"package_name":"stefanzweifel/git-auto-commit-action","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-coverage.yml","sha":null,"kind":"manifest","created_at":"2023-02-17T18:40:30.842Z","updated_at":"2023-02-17T18:40:30.842Z","repository_link":"https://github.com/omnideconv/SimBu/blob/devel/.github/workflows/test-coverage.yml","dependencies":[{"id":7744310671,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310672,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744310673,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test.yml","sha":null,"kind":"manifest","created_at":"2023-02-17T18:40:31.879Z","updated_at":"2023-02-17T18:40:31.879Z","repository_link":"https://github.com/omnideconv/SimBu/blob/devel/.github/workflows/test.yml","dependencies":[{"id":7744312017,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744312018,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744312019,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744312020,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7744312021,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":14.317739334504747,"created_at":"2025-09-08T10:45:20.234Z","updated_at":"2025-10-07T08:24:06.701Z","avatar_url":"https://github.com/omnideconv.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/bioinformatics/btac499"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["transcriptomics","single-cell","microscopy","particles","bioconductor-package","bioconductor","anndata","bioinformatics","genomics","tracking"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61524","html_url":"https://science.ecosyste.ms/projects/61524"}