{"id":61543,"name":"gdsfmt","description":"R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)","url":"https://github.com/zhengxwen/gdsfmt","last_synced_at":"2025-09-08T12:32:02.156Z","repository":{"id":45767929,"uuid":"20608627","full_name":"zhengxwen/gdsfmt","owner":"zhengxwen","description":"R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)","archived":false,"fork":false,"pushed_at":"2025-07-05T04:38:07.000Z","size":14194,"stargazers_count":20,"open_issues_count":12,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-13T11:21:15.139Z","etag":null,"topics":["bioinformatics","gds-format","genomics","infrastructure","r"],"latest_commit_sha":null,"homepage":"http://www.bioconductor.org/packages/gdsfmt","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/zhengxwen.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-06-08T03:41:34.000Z","updated_at":"2025-07-22T09:22:11.000Z","dependencies_parsed_at":"2023-01-30T21:31:06.665Z","dependency_job_id":"f1dababb-08eb-4522-b93f-25b86627b75f","html_url":"https://github.com/zhengxwen/gdsfmt","commit_stats":{"total_commits":541,"total_committers":7,"mean_commits":77.28571428571429,"dds":0.2865064695009242,"last_synced_commit":"acba683d95b8a7962293fda4cae887c4afbe2f26"},"previous_names":[],"tags_count":16,"template":false,"template_full_name":null,"purl":"pkg:github/zhengxwen/gdsfmt","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zhengxwen","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185616,"owners_count":25237431,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"zhengxwen","name":"Xiuwen Zheng","uuid":"6189013","kind":"user","description":"","email":"","website":null,"location":"Chicago","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6189013?u=e058d265d6c778060e38ded0b029e1384d76868b\u0026v=4","repositories_count":13,"last_synced_at":"2024-03-14T15:54:51.335Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/zhengxwen","funding_links":[],"total_stars":183,"followers":null,"following":null,"created_at":"2022-11-08T16:19:09.355Z","updated_at":"2024-03-14T15:54:59.399Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zhengxwen","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zhengxwen/repositories"},"packages":[{"id":8419460,"name":"gdsfmt","ecosystem":"bioconductor","description":"R Interface to CoreArray Genomic Data Structure (GDS) Files","homepage":"https://github.com/zhengxwen/gdsfmt ","licenses":"LGPL-3","normalized_licenses":["LGPL-3.0"],"repository_url":"https://github.com/zhengxwen/gdsfmt","keywords_array":["DataImport","Infrastructure","Software"],"namespace":null,"versions_count":9,"first_release_published_at":"2023-10-12T14:35:05.886Z","latest_release_published_at":"2025-08-13T03:34:58.812Z","latest_release_number":"1.44.1","last_synced_at":"2025-08-13T03:35:00.210Z","created_at":"2023-10-12T14:35:05.733Z","updated_at":"2025-08-13T19:28:17.520Z","registry_url":"https://bioconductor.org/packages/gdsfmt","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/gdsfmt/inst/doc/gdsfmt.pdf","metadata":{},"repo_metadata":{"id":45767929,"uuid":"20608627","full_name":"zhengxwen/gdsfmt","owner":"zhengxwen","description":"R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)","archived":false,"fork":false,"pushed_at":"2025-07-05T04:38:07.000Z","size":14194,"stargazers_count":20,"open_issues_count":12,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-13T11:21:15.139Z","etag":null,"topics":["bioinformatics","gds-format","genomics","infrastructure","r"],"latest_commit_sha":null,"homepage":"http://www.bioconductor.org/packages/gdsfmt","language":"C","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/zhengxwen.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-06-08T03:41:34.000Z","updated_at":"2025-07-22T09:22:11.000Z","dependencies_parsed_at":"2023-01-30T21:31:06.665Z","dependency_job_id":"f1dababb-08eb-4522-b93f-25b86627b75f","html_url":"https://github.com/zhengxwen/gdsfmt","commit_stats":{"total_commits":541,"total_committers":7,"mean_commits":77.28571428571429,"dds":0.2865064695009242,"last_synced_commit":"acba683d95b8a7962293fda4cae887c4afbe2f26"},"previous_names":[],"tags_count":16,"template":false,"template_full_name":null,"purl":"pkg:github/zhengxwen/gdsfmt","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zhengxwen","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270298489,"owners_count":24560877,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-13T02:00:09.904Z","response_time":66,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"zhengxwen","name":"Xiuwen Zheng","uuid":"6189013","kind":"user","description":"","email":"","website":null,"location":"Chicago","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6189013?u=e058d265d6c778060e38ded0b029e1384d76868b\u0026v=4","repositories_count":13,"last_synced_at":"2024-03-14T15:54:51.335Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/zhengxwen","funding_links":[],"total_stars":183,"followers":null,"following":null,"created_at":"2022-11-08T16:19:09.355Z","updated_at":"2024-03-14T15:54:59.399Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zhengxwen","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zhengxwen/repositories"},"tags":[{"name":"v1.34.0","sha":"2b2654bb0bdabe9acbe1d56a7783fc483b6ab248","kind":"commit","published_at":"2022-11-05T03:28:16.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.34.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.34.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.34.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.34.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.34.0/manifests"},{"name":"v1.32.0","sha":"54db7cdd179e91cdb5a37b159ced6d97353b7187","kind":"commit","published_at":"2022-04-06T23:43:38.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.32.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.32.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.32.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.32.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.32.0/manifests"},{"name":"v1.28.0","sha":"dbe0346ffdc6e7294ccef4ecbd5aad6fd3a831c1","kind":"commit","published_at":"2021-06-10T23:04:34.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.28.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.28.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.28.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.28.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.28.0/manifests"},{"name":"v1.24.1","sha":"2892368379cfacd5cb4dc1830bdc5bed90221f07","kind":"commit","published_at":"2020-06-15T21:03:03.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.24.1","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.24.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.24.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.24.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.24.1/manifests"},{"name":"v1.20.0","sha":"421c9676cbd97332f908ac66d2bb81cd94530f17","kind":"commit","published_at":"2019-05-07T17:15:44.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.20.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.20.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.20.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.20.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.20.0/manifests"},{"name":"v1.18.0","sha":"f4fd7a16d0958684edb266019b4312a879e466f5","kind":"commit","published_at":"2018-11-01T22:41:52.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.18.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.18.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.18.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.18.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.18.0/manifests"},{"name":"v1.12.0","sha":"c5c27c06bf5e3407f230cb4f53442c58ed563120","kind":"commit","published_at":"2017-04-28T02:31:57.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.12.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.12.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.12.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.12.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.12.0/manifests"},{"name":"v1.7.17","sha":"7ccaf43e5bdeec82109ee5efc23d9a3ffb4ac377","kind":"commit","published_at":"2016-04-06T01:13:48.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.7.17","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.7.17","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.7.17","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.7.17","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.7.17/manifests"},{"name":"v1.6.0","sha":"3ddb33ae80e2bf2c480cc367337f3ca082a14849","kind":"commit","published_at":"2015-10-13T19:36:05.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.6.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.6.0/manifests"},{"name":"1.6.0","sha":"3ddb33ae80e2bf2c480cc367337f3ca082a14849","kind":"commit","published_at":"2015-10-13T19:36:05.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/1.6.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/1.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@1.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/1.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/1.6.0/manifests"},{"name":"1.5.7","sha":"64a10b94dcd15dd6721850e90cd1c3353335dc23","kind":"commit","published_at":"2015-07-10T09:42:31.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/1.5.7","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/1.5.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@1.5.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/1.5.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/1.5.7/manifests"},{"name":"v1.1.3","sha":"61696d84db322bc3898091a4c366d6ec8d1336fc","kind":"commit","published_at":"2014-11-16T09:31:25.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.1.3","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.1.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.1.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.3/manifests"},{"name":"v1.1.2","sha":"cd5d31eb7dded9b9f7f31ac54abab2b483a45b4f","kind":"commit","published_at":"2014-10-28T05:02:28.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.1.2","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.2/manifests"},{"name":"v1.1.1.1","sha":"1de5c495d0624639f451a7e4553efba3c65e39f9","kind":"commit","published_at":"2014-10-06T06:16:38.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.1.1.1","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.1.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.1.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.1.1/manifests"},{"name":"v1.1.0","sha":"d176e72e8b4c21630d8e80cb363722d250e0f58b","kind":"commit","published_at":"2014-09-11T18:19:31.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.1.0","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.1.0/manifests"},{"name":"v1.0.5","sha":"43640245df7cf144c8c63986dbcf91bf3b1afd0b","kind":"commit","published_at":"2014-06-08T16:23:36.000Z","download_url":"https://codeload.github.com/zhengxwen/gdsfmt/tar.gz/v1.0.5","html_url":"https://github.com/zhengxwen/gdsfmt/releases/tag/v1.0.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/zhengxwen/gdsfmt@v1.0.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/tags/v1.0.5/manifests"}]},"repo_metadata_updated_at":"2025-08-13T19:28:17.520Z","dependent_packages_count":18,"downloads":262938,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":8.224543080939947,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":2.7415143603133156},"purl":"pkg:bioconductor/gdsfmt","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/gdsfmt","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/gdsfmt","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/gdsfmt/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-06-30T00:30:12.248Z","issues_count":46,"pull_requests_count":3,"avg_time_to_close_issue":2414414.088235294,"avg_time_to_close_pull_request":5437.666666666667,"issues_closed_count":34,"pull_requests_closed_count":3,"pull_request_authors_count":2,"issue_authors_count":21,"avg_comments_per_issue":1.6304347826086958,"avg_comments_per_pull_request":0.3333333333333333,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":3976400.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":4.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/issues","maintainers":[{"login":"zhengxwen","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zhengxwen"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gdsfmt/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gdsfmt/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gdsfmt/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gdsfmt/related_packages","maintainers":[{"uuid":"zhengx@u.washington.edu","login":null,"name":"Xiuwen Zheng","email":"zhengx@u.washington.edu","url":null,"packages_count":4,"html_url":null,"role":null,"created_at":"2023-11-25T14:05:43.459Z","updated_at":"2023-11-25T14:05:43.459Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/zhengx@u.washington.edu/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402930,"full_name":"zhengxwen/gdsfmt","default_branch":"master","committers":[{"name":"Xiuwen Zheng","email":"zhengxwen@gmail.com","login":"zhengxwen","count":471},{"name":"x.zheng","email":"x.zheng@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":66},{"name":"d.tenenbaum","email":"d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":4},{"name":"Bioconductor Git-SVN Bridge","email":"bioc-sync@bioconductor.org","login":null,"count":3},{"name":"Nathan Weeks","email":"weeks@iastate.edu","login":"nathanweeks","count":2},{"name":"m.carlson","email":"m.carlson@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1}],"total_commits":547,"total_committers":6,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":91.16666666666667,"dds":0.13893967093235837,"past_year_committers":[{"name":"Xiuwen Zheng","email":"zhengxwen","login":"zhengxwen","count":15}],"past_year_total_commits":15,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":15.0,"past_year_dds":0.0,"last_synced_at":"2025-03-23T06:48:43.220Z","last_synced_commit":"4ec1d904b80b8a4c225884afbf37cb2aea316dbb","created_at":"2023-10-25T13:03:55.007Z","updated_at":"2025-03-23T06:48:43.220Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:08.406Z","repositories_count":5479765,"commits_count":853310318,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"zhengxwen/gdsfmt","html_url":"https://github.com/zhengxwen/gdsfmt","last_synced_at":"2025-08-14T07:29:31.628Z","status":"error","issues_count":46,"pull_requests_count":3,"avg_time_to_close_issue":2414414.088235294,"avg_time_to_close_pull_request":5437.666666666667,"issues_closed_count":34,"pull_requests_closed_count":3,"pull_request_authors_count":2,"issue_authors_count":21,"avg_comments_per_issue":1.6304347826086958,"avg_comments_per_pull_request":0.3333333333333333,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":3976400.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":4.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-02-02T01:57:36.460Z","updated_at":"2025-09-02T20:34:15.031Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengxwen%2Fgdsfmt/issues","issue_labels_count":{"bug":15,"enhancement":2,"document":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":21,"OWNER":14},"pull_request_author_associations_count":{"OWNER":2,"CONTRIBUTOR":1},"issue_authors":{"zhengxwen":14,"sariya":2,"smgogarten":1,"bastistician":1,"229668880":1,"Sebass-DP":1,"liqg":1,"The-Jacob-Lopez":1,"kforner":1,"rsbivand":1,"splaisan":1,"qindan2008":1,"connorourke":1,"rbutleriii":1,"thierrygosselin":1,"tdeenes":1,"barracuda156":1,"jingydz":1,"mewinsto":1,"claudiaQB":1,"yiyangphd":1},"pull_request_authors":{"zhengxwen":2,"nathanweeks":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164830,"issues_count":31988553,"pull_requests_count":100203706,"authors_count":10728625,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"bastistician":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"zhengxwen","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zhengxwen"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":2,"WatchEvent":2,"IssueCommentEvent":6,"PushEvent":10},"last_year":{"IssuesEvent":2,"WatchEvent":2,"IssueCommentEvent":6,"PushEvent":10}},"keywords":["bioinformatics","gds-format","genomics","infrastructure","r"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-03T06:45:15.672Z","updated_at":"2022-08-03T06:45:15.672Z","repository_link":"https://github.com/zhengxwen/gdsfmt/blob/master/DESCRIPTION","dependencies":[{"id":561237550,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 2.15.0","direct":true,"kind":"depends","optional":false},{"id":561237551,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":561237552,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237553,"package_name":"digest","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237554,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237555,"package_name":"crayon","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237556,"package_name":"RUnit","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237557,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237558,"package_name":"markdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237559,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":561237560,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/r.yml","sha":null,"kind":"manifest","created_at":"2023-01-30T21:31:06.654Z","updated_at":"2023-01-30T21:31:06.654Z","repository_link":"https://github.com/zhengxwen/gdsfmt/blob/master/.github/workflows/r.yml","dependencies":[{"id":7255871510,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7255871511,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"f57f1301a053485946083d7a45022b278929a78a","direct":true,"kind":"composite","optional":false}]}],"score":17.737241171721553,"created_at":"2025-09-08T10:45:20.697Z","updated_at":"2025-10-07T08:24:07.041Z","avatar_url":"https://github.com/zhengxwen.png","language":"C","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["http://dx.doi.org/10.1093/bioinformatics/bts606","http://dx.doi.org/10.1093/bioinformatics/btx145"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor","derfinder","rnaseq","bioconductor-package","fluorescence","microscopy","particles","tracking","ncbi-geo","feature-detection"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61543","html_url":"https://science.ecosyste.ms/projects/61543"}