{"id":61544,"name":"qpgraph","description":"Estimate gene and eQTL networks from high-throughput expression and genotyping assays","url":"https://github.com/rcastelo/qpgraph","last_synced_at":"2025-09-08T12:32:05.580Z","repository":{"id":83240544,"uuid":"102103147","full_name":"rcastelo/qpgraph","owner":"rcastelo","description":"Estimate gene and eQTL networks from high-throughput expression and genotyping assays","archived":false,"fork":false,"pushed_at":"2025-07-29T17:07:32.000Z","size":9619,"stargazers_count":3,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-09-03T23:57:25.312Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rcastelo.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-09-01T10:40:24.000Z","updated_at":"2025-07-29T17:07:37.000Z","dependencies_parsed_at":null,"dependency_job_id":"30c5ae42-78d5-4499-b762-8b74de41f001","html_url":"https://github.com/rcastelo/qpgraph","commit_stats":{"total_commits":339,"total_committers":17,"mean_commits":"19.941176470588236","dds":0.2625368731563422,"last_synced_commit":"d3e2dcc7ab52dcecd26aeb803d4aeb1c7842f60d"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/rcastelo/qpgraph","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rcastelo","download_url":"https://codeload.github.com/rcastelo/qpgraph/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274185586,"owners_count":25237427,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"rcastelo","name":"Robert Castelo","uuid":"1677433","kind":"user","description":"biostatistics, machine learning, genetics, genomics, R/Bioconductor","email":"","website":"https://functionalgenomics.upf.edu","location":"Barcelona","twitter":"robertclab","company":"Universitat Pompeu Fabra","icon_url":"https://avatars.githubusercontent.com/u/1677433?u=d36463a9ceb7e03f55f4704bca1d9d43b7fab3a5\u0026v=4","repositories_count":15,"last_synced_at":"2024-03-19T07:27:17.680Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rcastelo","funding_links":[],"total_stars":171,"followers":null,"following":null,"created_at":"2022-11-09T02:16:14.494Z","updated_at":"2024-03-19T07:27:20.479Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rcastelo","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rcastelo/repositories"},"packages":[{"id":8420390,"name":"qpgraph","ecosystem":"bioconductor","description":"Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics Data","homepage":"https://github.com/rcastelo/qpgraph ","licenses":"GPL (\u003e= 2)","normalized_licenses":["CNRI-Python-GPL-Compatible"],"repository_url":"https://github.com/rcastelo/qpgraph","keywords_array":["GeneExpression","GeneRegulation","GeneticVariability","Genetics","GraphAndNetwork","Microarray","NetworkInference","Pathways","SNP","Software","Transcription"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:53:38.289Z","latest_release_published_at":"2025-04-28T16:20:14.205Z","latest_release_number":"2.42.0","last_synced_at":"2025-09-03T14:48:20.514Z","created_at":"2023-10-12T14:53:38.051Z","updated_at":"2025-09-03T23:57:32.317Z","registry_url":"https://bioconductor.org/packages/qpgraph","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/qpgraph/inst/doc/qpgraph.pdf","metadata":{},"repo_metadata":{"id":83240544,"uuid":"102103147","full_name":"rcastelo/qpgraph","owner":"rcastelo","description":"Estimate gene and eQTL networks from high-throughput expression and genotyping assays","archived":false,"fork":false,"pushed_at":"2025-07-29T17:07:32.000Z","size":9619,"stargazers_count":3,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-07-29T20:01:07.790Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rcastelo.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-09-01T10:40:24.000Z","updated_at":"2025-07-29T17:07:37.000Z","dependencies_parsed_at":null,"dependency_job_id":"30c5ae42-78d5-4499-b762-8b74de41f001","html_url":"https://github.com/rcastelo/qpgraph","commit_stats":{"total_commits":339,"total_committers":17,"mean_commits":"19.941176470588236","dds":0.2625368731563422,"last_synced_commit":"d3e2dcc7ab52dcecd26aeb803d4aeb1c7842f60d"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/rcastelo/qpgraph","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rcastelo","download_url":"https://codeload.github.com/rcastelo/qpgraph/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273529548,"owners_count":25121828,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"rcastelo","name":"Robert Castelo","uuid":"1677433","kind":"user","description":"biostatistics, machine learning, genetics, genomics, R/Bioconductor","email":"","website":"https://functionalgenomics.upf.edu","location":"Barcelona","twitter":"robertclab","company":"Universitat Pompeu Fabra","icon_url":"https://avatars.githubusercontent.com/u/1677433?u=d36463a9ceb7e03f55f4704bca1d9d43b7fab3a5\u0026v=4","repositories_count":15,"last_synced_at":"2024-03-19T07:27:17.680Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rcastelo","funding_links":[],"total_stars":171,"followers":null,"following":null,"created_at":"2022-11-09T02:16:14.494Z","updated_at":"2024-03-19T07:27:20.479Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rcastelo","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rcastelo/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-09-03T23:57:32.317Z","dependent_packages_count":1,"downloads":62355,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":13.883677298311445,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":4.627892432770482},"purl":"pkg:bioconductor/qpgraph","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/qpgraph","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/qpgraph","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/qpgraph/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/qpgraph/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/qpgraph/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/qpgraph/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/qpgraph/related_packages","maintainers":[{"uuid":"robert.castelo@upf.edu","login":null,"name":"Robert Castelo","email":"robert.castelo@upf.edu","url":null,"packages_count":5,"html_url":null,"role":null,"created_at":"2023-11-25T14:22:54.061Z","updated_at":"2023-11-25T14:22:54.061Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/robert.castelo@upf.edu/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403090,"full_name":"rcastelo/qpgraph","default_branch":"devel","committers":[{"name":"Robert Castelo","email":"robert.castelo@upf.edu","login":null,"count":250},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":null,"count":26},{"name":"[rcastelo]","email":"[robert.castelo@upf.edu]","login":null,"count":16},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":14},{"name":"Patrick Aboyoun","email":"unknown","login":null,"count":9},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":7},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"Paul Shannon","email":"pshannon@fhcrc.org","login":null,"count":1},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":null,"count":1},{"name":"Marc Carlson","email":"mcarlson@fhcrc.org","login":null,"count":1},{"name":"Sonali Arora","email":"sarora@fhcrc.org","login":null,"count":1},{"name":"Michael Lawrence","email":"lawremi@iastate.edu","login":null,"count":1}],"total_commits":339,"total_committers":17,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":19.941176470588236,"dds":0.2625368731563422,"past_year_committers":[{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"Robert Castelo","email":"robert.castelo@upf.edu","login":null,"count":1}],"past_year_total_commits":5,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":1.6666666666666667,"past_year_dds":0.6,"last_synced_at":"2023-10-25T13:05:21.285Z","last_synced_commit":"d3e2dcc7ab52dcecd26aeb803d4aeb1c7842f60d","created_at":"2023-10-25T13:05:17.502Z","updated_at":"2023-10-25T13:05:21.292Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-07T00:00:09.744Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"rcastelo/qpgraph","html_url":"https://github.com/rcastelo/qpgraph","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-08T12:31:44.672Z","updated_at":"2025-09-08T12:31:44.672Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rcastelo%2Fqpgraph/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10165784,"issues_count":31999265,"pull_requests_count":100269215,"authors_count":10729006,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":2,"IssueCommentEvent":1,"PushEvent":9,"CreateEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":2,"IssueCommentEvent":1,"PushEvent":9,"CreateEvent":1}},"keywords":[],"dependencies":[],"score":15.260138919429219,"created_at":"2025-09-08T10:45:20.700Z","updated_at":"2025-10-07T08:24:07.063Z","avatar_url":"https://github.com/rcastelo.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","genomics","bioconductor","bioinformatics","mass-spectrometry","metabolomics","bioc","looking-for-maintainer","peptides","digest"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61544","html_url":"https://science.ecosyste.ms/projects/61544"}