{"id":61592,"name":"ndexr","description":"R client library for NDEx","url":"https://github.com/frankkramer-lab/ndexr","last_synced_at":"2025-09-08T10:46:52.406Z","repository":{"id":17004979,"uuid":"68606558","full_name":"frankkramer-lab/ndexr","owner":"frankkramer-lab","description":"R client library for NDEx","archived":false,"fork":false,"pushed_at":"2023-03-23T10:05:36.000Z","size":984,"stargazers_count":9,"open_issues_count":0,"forks_count":1,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-08-12T19:01:45.249Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/frankkramer-lab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-09-19T13:04:57.000Z","updated_at":"2024-08-28T19:45:53.000Z","dependencies_parsed_at":"2024-11-02T16:08:34.515Z","dependency_job_id":"392bf004-e9ba-4285-a1a6-40eec79daa5b","html_url":"https://github.com/frankkramer-lab/ndexr","commit_stats":{"total_commits":135,"total_committers":17,"mean_commits":"7.9411764705882355","dds":0.7481481481481482,"last_synced_commit":"949bffcc7f89ca319925d1c752be26ca94abef33"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/frankkramer-lab/ndexr","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/frankkramer-lab","download_url":"https://codeload.github.com/frankkramer-lab/ndexr/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274173419,"owners_count":25235197,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"frankkramer-lab","name":"frankkramer-lab","uuid":"20581123","kind":"organization","description":"","email":null,"website":"https://www.uni-augsburg.de/informatik/misit/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/20581123?v=4","repositories_count":35,"last_synced_at":"2024-03-26T14:57:49.501Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/frankkramer-lab","funding_links":[],"total_stars":757,"followers":27,"following":0,"created_at":"2022-11-03T22:50:49.106Z","updated_at":"2024-03-26T14:57:51.743Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/frankkramer-lab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/frankkramer-lab/repositories"},"packages":null,"commits":{"id":1403192,"full_name":"frankkramer-lab/ndexr","default_branch":"master","committers":[{"name":"Florian J. Auer","email":"florian.auer@med.uni-goettingen.de","login":"florian-j-auer","count":48},{"name":"Alexander Ishkin","email":"don.shikin@gmail.com","login":"donshikin","count":21},{"name":"Frank Kramer","email":"frank.kramer@med.uni-goettingen.de","login":null,"count":18},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"Frank Kramer","email":"dev@frankkramer.de","login":"frankkramer","count":12},{"name":"Dexter Pratt","email":"dexterpratt.bio@gmail.com","login":"dexterpratt","count":7},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"Dexter Pratt","email":"dexterpratt@Dexters-iMac.local","login":null,"count":2},{"name":"Alexander Ishkin","email":"aleksandr.ishkin@thomsonreuters.com","login":null,"count":2},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":"LiNk-NY","count":1},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1},{"name":"Florian Auer","email":"auerf@misit003.informatik.uni-augsburg.de","login":null,"count":1}],"total_commits":135,"total_committers":15,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":9.0,"dds":0.6444444444444444,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-07-07T02:09:22.483Z","last_synced_commit":"949bffcc7f89ca319925d1c752be26ca94abef33","created_at":"2023-10-25T13:15:50.543Z","updated_at":"2025-07-07T02:10:12.797Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.254Z","repositories_count":5479765,"commits_count":853310153,"contributors_count":31095234,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"frankkramer-lab/ndexr","html_url":"https://github.com/frankkramer-lab/ndexr","last_synced_at":"2025-08-13T11:07:07.241Z","status":"error","issues_count":0,"pull_requests_count":4,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":35360747.0,"issues_closed_count":0,"pull_requests_closed_count":4,"pull_request_authors_count":3,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-05-04T00:24:59.551Z","updated_at":"2025-08-13T11:07:07.241Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankkramer-lab%2Fndexr/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"MEMBER":3,"NONE":1},"issue_authors":{},"pull_request_authors":{"florian-j-auer":2,"frankkramer":1,"michbur":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-31T00:00:11.523Z","repositories_count":9023713,"issues_count":26300620,"pull_requests_count":75376799,"authors_count":8220043,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"florian-j-auer","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/florian-j-auer"},{"login":"frankkramer","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/frankkramer"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-07T08:15:42.578Z","updated_at":"2022-08-07T08:15:42.578Z","repository_link":"https://github.com/frankkramer-lab/ndexr/blob/master/DESCRIPTION","dependencies":[{"id":590844522,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":590844526,"package_name":"httr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":590844528,"package_name":"jsonlite","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":590844530,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":590844532,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":590844534,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":590844536,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":590844540,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":590844542,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":4.90527477843843,"created_at":"2025-09-08T10:45:54.101Z","updated_at":"2025-10-07T08:24:07.903Z","avatar_url":"https://github.com/frankkramer-lab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/doi:10.18129/B9.bioc.RCX","https://doi.org/doi:10.18129/B9.bioc.graph","https://doi.org/10.1093/nar/gkv1048"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","mirror","similarity-measurement","similarity","pathway-analysis","gene-sets","gene","functional-similarity","bioconductor","bioinformatics"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61592","html_url":"https://science.ecosyste.ms/projects/61592"}