{"id":61610,"name":"getDEE2","description":"Programmatic access to the DEE2 RNA expression dataset.","url":"https://github.com/markziemann/getdee2","last_synced_at":"2025-09-08T10:47:11.519Z","repository":{"id":44685417,"uuid":"253492888","full_name":"markziemann/getDEE2","owner":"markziemann","description":"Programmatic access to the DEE2 RNA expression dataset.","archived":false,"fork":false,"pushed_at":"2025-06-11T07:14:03.000Z","size":1335,"stargazers_count":4,"open_issues_count":2,"forks_count":0,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2025-06-11T08:28:40.997Z","etag":null,"topics":["bioinformatics","data-mining","genomics","rna-expression","rna-seq","transcriptomics"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/getDEE2/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/markziemann.png","metadata":{"files":{"readme":null,"changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-04-06T12:36:52.000Z","updated_at":"2025-06-11T07:14:06.000Z","dependencies_parsed_at":"2025-06-11T08:25:13.138Z","dependency_job_id":"548f55bd-037f-4166-9fbd-edbfbb501fae","html_url":"https://github.com/markziemann/getDEE2","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/markziemann/getDEE2","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/markziemann","download_url":"https://codeload.github.com/markziemann/getDEE2/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274173349,"owners_count":25235197,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"markziemann","name":"Mark Ziemann","uuid":"5591840","kind":"user","description":"","email":"","website":"http://genomespot.blogspot.com/","location":"Melbourne \u0026 Geelong, Australia","twitter":"mdziemann","company":"Deakin University","icon_url":"https://avatars.githubusercontent.com/u/5591840?u=a5c26100457eb7aa68901903aa832e1133813f33\u0026v=4","repositories_count":8,"last_synced_at":"2023-03-05T20:23:26.565Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/markziemann","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T22:18:00.794Z","updated_at":"2023-03-05T20:23:26.584Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/markziemann","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/markziemann/repositories"},"packages":[{"id":8419526,"name":"getDEE2","ecosystem":"bioconductor","description":"Programmatic access to the DEE2 RNA expression dataset","homepage":"https://github.com/markziemann/getDEE2 ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/markziemann/getDEE2","keywords_array":["GeneExpression","Sequencing","Software","Transcriptomics"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T14:36:33.116Z","latest_release_published_at":"2025-05-20T14:18:31.575Z","latest_release_number":"1.18.0","last_synced_at":"2025-08-31T12:22:33.102Z","created_at":"2023-10-12T14:36:32.846Z","updated_at":"2025-08-31T12:22:33.102Z","registry_url":"https://bioconductor.org/packages/getDEE2","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/getDEE2/inst/doc/getDEE2.pdf","metadata":{},"repo_metadata":{"uuid":"253492888","full_name":"markziemann/getDEE2","owner":"markziemann","description":"Programmatic access to the DEE2 RNA expression dataset.","archived":false,"fork":false,"pushed_at":"2021-08-23T15:28:50.000Z","size":1323,"stargazers_count":4,"open_issues_count":2,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2023-10-25T13:16:00.859Z","etag":null,"topics":["bioinformatics","data-mining","genomics","rna-expression","rna-seq","transcriptomics"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/getDEE2/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/markziemann.png","metadata":{"files":{"readme":null,"changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-04-06T12:36:52.000Z","updated_at":"2022-07-13T12:55:33.000Z","dependencies_parsed_at":"2022-08-04T12:00:19.997Z","dependency_job_id":null,"html_url":"https://github.com/markziemann/getDEE2","commit_stats":null,"previous_names":[],"tags_count":0,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/markziemann","download_url":"https://codeload.github.com/markziemann/getDEE2/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":172197642,"owners_count":9794507,"icon_url":"https://github.com/github.png","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"markziemann","name":"Mark Ziemann","uuid":"5591840","kind":"user","description":"","email":"","website":"http://genomespot.blogspot.com/","location":"Melbourne \u0026 Geelong, Australia","twitter":"mdziemann","company":"Deakin University","icon_url":"https://avatars.githubusercontent.com/u/5591840?u=a5c26100457eb7aa68901903aa832e1133813f33\u0026v=4","repositories_count":8,"last_synced_at":"2023-03-05T20:23:26.565Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/markziemann","created_at":"2022-11-15T22:18:00.794Z","updated_at":"2023-03-05T20:23:26.584Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/markziemann","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/markziemann/repositories"},"tags":[]},"repo_metadata_updated_at":"2023-11-20T11:21:33.149Z","dependent_packages_count":0,"downloads":8216,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":80.57901085645356,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":26.859670285484523},"purl":"pkg:bioconductor/getDEE2","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/getDEE2","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/getDEE2","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/getDEE2/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/getDEE2/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/getDEE2/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/getDEE2/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/getDEE2/related_packages","maintainers":[{"uuid":"mark.ziemann@gmail.com","login":null,"name":"Mark Ziemann","email":"mark.ziemann@gmail.com","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-11-20T11:22:00.076Z","updated_at":"2023-11-20T11:22:00.076Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/mark.ziemann@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403244,"full_name":"markziemann/getDEE2","default_branch":"master","committers":[{"name":"markziemann","email":"mark.ziemann@gmail.com","login":null,"count":36},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":4}],"total_commits":40,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":20.0,"dds":0.09999999999999998,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2024-01-29T05:39:20.091Z","last_synced_commit":"379dd4c098e69b5334417de522a0d58232aed478","created_at":"2023-10-25T13:15:55.162Z","updated_at":"2024-01-29T05:39:20.093Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2FgetDEE2/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5481641,"commits_count":853635064,"contributors_count":31099484,"owners_count":907162,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"markziemann/getdee2","html_url":"https://github.com/markziemann/getdee2","last_synced_at":"2025-08-31T08:59:46.107Z","status":null,"issues_count":11,"pull_requests_count":1,"avg_time_to_close_issue":654696.8888888889,"avg_time_to_close_pull_request":9.0,"issues_closed_count":9,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":1.8181818181818181,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":92016.0,"past_year_avg_time_to_close_pull_request":9.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2023-12-28T00:22:35.354Z","updated_at":"2025-08-31T08:59:46.108Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2Fgetdee2","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/markziemann%2Fgetdee2/issues","issue_labels_count":{"enhancement":1},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":10,"NONE":1},"pull_request_author_associations_count":{"OWNER":1},"issue_authors":{"markziemann":10,"kMutagene":1},"pull_request_authors":{"markziemann":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-31T00:00:11.523Z","repositories_count":8784528,"issues_count":25260519,"pull_requests_count":71924072,"authors_count":8219295,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"OWNER":1},"past_year_pull_request_author_associations_count":{"OWNER":1},"past_year_issue_authors":{"markziemann":1},"past_year_pull_request_authors":{"markziemann":1},"maintainers":[{"login":"markziemann","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/markziemann"}],"active_maintainers":[{"login":"markziemann","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/markziemann"}]},"events":{"total":{"IssuesEvent":2,"DeleteEvent":2,"PushEvent":8,"PullRequestEvent":2,"CreateEvent":2},"last_year":{"IssuesEvent":2,"DeleteEvent":2,"PushEvent":8,"PullRequestEvent":2,"CreateEvent":2}},"keywords":["bioinformatics","data-mining","genomics","rna-expression","rna-seq","transcriptomics"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-04T12:00:19.918Z","updated_at":"2022-08-04T12:00:19.918Z","repository_link":"https://github.com/markziemann/getDEE2/blob/devel/DESCRIPTION","dependencies":[{"id":573786083,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0","direct":true,"kind":"depends","optional":false},{"id":573786084,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":573786085,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":573786086,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":573786087,"package_name":"htm2txt","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":573786088,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":573786089,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":573786090,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":11.498867107719187,"created_at":"2025-09-08T10:45:54.154Z","updated_at":"2025-10-07T08:24:08.274Z","avatar_url":"https://github.com/markziemann.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/61610","html_url":"https://science.ecosyste.ms/projects/61610"}