{"id":61637,"name":"diffcyt","description":"R package for differential discovery analyses in high-dimensional cytometry data","url":"https://github.com/lmweber/diffcyt","last_synced_at":"2025-09-08T10:47:30.102Z","repository":{"id":39850923,"uuid":"74908087","full_name":"lmweber/diffcyt","owner":"lmweber","description":"R package for differential discovery analyses in high-dimensional cytometry data","archived":false,"fork":false,"pushed_at":"2025-02-08T18:17:25.000Z","size":1612,"stargazers_count":21,"open_issues_count":34,"forks_count":12,"subscribers_count":6,"default_branch":"devel","last_synced_at":"2025-08-29T01:10:02.748Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lmweber.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-11-27T19:04:47.000Z","updated_at":"2025-08-19T16:11:40.000Z","dependencies_parsed_at":"2022-07-15T06:16:11.349Z","dependency_job_id":"d7bb4aa4-c14d-4265-9ebf-2c96a0b93b8e","html_url":"https://github.com/lmweber/diffcyt","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/lmweber/diffcyt","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","download_url":"https://codeload.github.com/lmweber/diffcyt/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274173419,"owners_count":25235197,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"lmweber","name":"Lukas Weber","uuid":"8062417","kind":"user","description":"Assistant Professor, Department of Biostatistics, Boston University","email":"","website":"https://lmweber.org/","location":"Boston, MA","twitter":null,"company":"Boston University","icon_url":"https://avatars.githubusercontent.com/u/8062417?u=7d110b41c67835d59e47c7885564233bc1228625\u0026v=4","repositories_count":75,"last_synced_at":"2024-03-17T20:20:25.422Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/lmweber","funding_links":[],"total_stars":190,"followers":null,"following":null,"created_at":"2022-11-08T23:21:12.673Z","updated_at":"2024-03-17T20:20:25.878Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber/repositories"},"packages":[{"id":8419227,"name":"diffcyt","ecosystem":"bioconductor","description":"Differential discovery in high-dimensional cytometry via high-resolution clustering","homepage":"https://github.com/lmweber/diffcyt ","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/lmweber/diffcyt","keywords_array":["CellBasedAssays","CellBiology","Clustering","FeatureExtraction","FlowCytometry","ImmunoOncology","Proteomics","SingleCell","Software"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-12T14:30:12.942Z","latest_release_published_at":"2025-05-09T08:47:46.931Z","latest_release_number":"1.28.0","last_synced_at":"2025-08-28T20:45:08.602Z","created_at":"2023-10-12T14:30:12.604Z","updated_at":"2025-08-29T04:27:54.294Z","registry_url":"https://bioconductor.org/packages/diffcyt","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/diffcyt/inst/doc/diffcyt.pdf","metadata":{},"repo_metadata":{"id":39850923,"uuid":"74908087","full_name":"lmweber/diffcyt","owner":"lmweber","description":"R package for differential discovery analyses in high-dimensional cytometry data","archived":false,"fork":false,"pushed_at":"2025-02-08T18:17:25.000Z","size":1612,"stargazers_count":21,"open_issues_count":34,"forks_count":12,"subscribers_count":6,"default_branch":"devel","last_synced_at":"2025-08-29T01:10:02.748Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/lmweber.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-11-27T19:04:47.000Z","updated_at":"2025-08-19T16:11:40.000Z","dependencies_parsed_at":"2022-07-15T06:16:11.349Z","dependency_job_id":"d7bb4aa4-c14d-4265-9ebf-2c96a0b93b8e","html_url":"https://github.com/lmweber/diffcyt","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/lmweber/diffcyt","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","download_url":"https://codeload.github.com/lmweber/diffcyt/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272626285,"owners_count":24966438,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-29T02:00:10.610Z","response_time":87,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"lmweber","name":"Lukas Weber","uuid":"8062417","kind":"user","description":"Assistant Professor, Department of Biostatistics, Boston University","email":"","website":"https://lmweber.org/","location":"Boston, MA","twitter":null,"company":"Boston University","icon_url":"https://avatars.githubusercontent.com/u/8062417?u=7d110b41c67835d59e47c7885564233bc1228625\u0026v=4","repositories_count":75,"last_synced_at":"2024-03-17T20:20:25.422Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/lmweber","funding_links":[],"total_stars":190,"followers":null,"following":null,"created_at":"2022-11-08T23:21:12.673Z","updated_at":"2024-03-17T20:20:25.878Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/lmweber/repositories"},"tags":[{"name":"v1.3.0","sha":"62a85291147d1fdb7cedd7c44db7521a83ca3966","kind":"tag","published_at":"2019-01-07T16:12:08.000Z","download_url":"https://codeload.github.com/lmweber/diffcyt/tar.gz/v1.3.0","html_url":"https://github.com/lmweber/diffcyt/releases/tag/v1.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/lmweber/diffcyt@v1.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/tags/v1.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/tags/v1.3.0/manifests"}]},"repo_metadata_updated_at":"2025-08-29T04:27:54.294Z","dependent_packages_count":5,"downloads":40077,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":34.78260869565217,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":11.594202898550725},"purl":"pkg:bioconductor/diffcyt","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/diffcyt","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/diffcyt","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/diffcyt/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-28T20:57:33.413Z","issues_count":58,"pull_requests_count":6,"avg_time_to_close_issue":1717993.32,"avg_time_to_close_pull_request":2517858.0,"issues_closed_count":25,"pull_requests_closed_count":5,"pull_request_authors_count":5,"issue_authors_count":45,"avg_comments_per_issue":2.310344827586207,"avg_comments_per_pull_request":0.8333333333333334,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":6,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":173574.0,"past_year_avg_time_to_close_pull_request":470060.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":5,"past_year_avg_comments_per_issue":1.6666666666666667,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/issues","maintainers":[{"login":"lmweber","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lmweber"},{"login":"markrobinsonuzh","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/markrobinsonuzh"}],"active_maintainers":[{"login":"markrobinsonuzh","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/markrobinsonuzh"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcyt/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcyt/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcyt/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/diffcyt/related_packages","maintainers":[{"uuid":"lmweb012@gmail.com","login":null,"name":"Lukas M. Weber","email":"lmweb012@gmail.com","url":null,"packages_count":3,"html_url":null,"role":null,"created_at":"2025-02-17T19:08:03.225Z","updated_at":"2025-02-17T19:08:03.225Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/lmweb012@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402883,"full_name":"lmweber/diffcyt","default_branch":"devel","committers":[{"name":"Lukas Weber","email":"lukmweber@gmail.com","login":"lmweber","count":360},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":10},{"name":"fionarhuang","email":"fionarhuang@gmail.com","login":"fionarhuang","count":3},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"Mark Robinson","email":"mark.robinson@mls.uzh.ch","login":"markrobinsonuzh","count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"Kayla-Morrell","email":"kayla.morrell@roswellpark.org","login":"Kayla-Morrell","count":1},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":1},{"name":"markrobinsonuzh","email":"mark.robinson@imls.uzh.ch","login":null,"count":1}],"total_commits":396,"total_committers":10,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":39.6,"dds":0.09090909090909094,"past_year_committers":[{"name":"Lukas Weber","email":"lmweb012@gmail.com","login":"lmweber","count":4},{"name":"Mark Robinson","email":"mark.robinson@mls.uzh.ch","login":"markrobinsonuzh","count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":2}],"past_year_total_commits":8,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.6666666666666665,"past_year_dds":0.5,"last_synced_at":"2025-05-23T17:12:34.917Z","last_synced_commit":"a4da91421bd7efb2858d165b4277563192cc709f","created_at":"2023-10-25T13:03:40.587Z","updated_at":"2025-05-23T17:12:55.865Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5481641,"commits_count":853635064,"contributors_count":31099484,"owners_count":907162,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"lmweber/diffcyt","html_url":"https://github.com/lmweber/diffcyt","last_synced_at":"2025-08-31T15:10:12.985Z","status":null,"issues_count":57,"pull_requests_count":7,"avg_time_to_close_issue":1717993.32,"avg_time_to_close_pull_request":2176558.3333333335,"issues_closed_count":25,"pull_requests_closed_count":6,"pull_request_authors_count":5,"issue_authors_count":44,"avg_comments_per_issue":2.210526315789474,"avg_comments_per_pull_request":0.7142857142857143,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":173574.0,"past_year_avg_time_to_close_pull_request":470060.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.5,"past_year_avg_comments_per_pull_request":0.5,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"created_at":"2024-07-24T00:16:56.022Z","updated_at":"2025-09-02T02:20:25.703Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/lmweber%2Fdiffcyt/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":55,"OWNER":2,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"NONE":3,"COLLABORATOR":3,"CONTRIBUTOR":1},"issue_authors":{"LukaTandaric":3,"jenkinmt":3,"algebio":2,"cr2106":2,"tammyyyx":2,"paulyashna":2,"lmweber":2,"ramay":2,"shanh1":2,"SamGG":2,"denvercal1234GitHub":2,"Almr95":1,"Stein-ErikG":1,"antoine4ucsd":1,"MayaCyTOFnewbie":1,"hruffieux":1,"singlecellfan":1,"purisuto":1,"83years":1,"TongzhenXu":1,"LazDaria":1,"fionarhuang":1,"carl-coyle":1,"joe-jhou2":1,"JudithBernett":1,"jdhogan":1,"poconnel3":1,"sudu87":1,"feanaros":1,"DomenicoSkyWalker89":1,"amerji93":1,"FedericaOrsenigo":1,"Thapeachydude":1,"vivek-verma202":1,"LenaMayer":1,"florian-bach":1,"igordot":1,"EST09":1,"Terskikh":1,"MartijnVNL":1,"EAC-T":1,"yghosheh":1,"crchinfatt":1,"tdfy":1,"sneumann":1},"pull_request_authors":{"markrobinsonuzh":3,"HelenaLC":1,"igordot":1,"retogerber":1,"fionarhuang":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10032618,"issues_count":30504030,"pull_requests_count":90644762,"authors_count":10364207,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":4},"past_year_pull_request_author_associations_count":{"COLLABORATOR":2},"past_year_issue_authors":{"SamGG":2,"denvercal1234GitHub":1,"feanaros":1},"past_year_pull_request_authors":{"markrobinsonuzh":2},"maintainers":[{"login":"markrobinsonuzh","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/markrobinsonuzh"},{"login":"lmweber","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lmweber"}],"active_maintainers":[{"login":"markrobinsonuzh","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/markrobinsonuzh"}]},"events":{"total":{"IssuesEvent":5,"WatchEvent":1,"IssueCommentEvent":14,"PushEvent":8,"PullRequestEvent":2,"CreateEvent":3},"last_year":{"IssuesEvent":5,"WatchEvent":1,"IssueCommentEvent":14,"PushEvent":8,"PullRequestEvent":2,"CreateEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-07-15T06:16:11.232Z","updated_at":"2022-07-15T06:16:11.232Z","repository_link":"https://github.com/lmweber/diffcyt/blob/devel/DESCRIPTION","dependencies":[{"id":216684771,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.4.0","direct":true,"kind":"depends","optional":false},{"id":216684772,"package_name":"flowCore","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684773,"package_name":"FlowSOM","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684774,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684775,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684776,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684777,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684778,"package_name":"lme4","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684779,"package_name":"multcomp","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684780,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684781,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684782,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684783,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684784,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684785,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684786,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684787,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684788,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684789,"package_name":"ComplexHeatmap","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684790,"package_name":"circlize","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684791,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":216684792,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":216684793,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":216684794,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":216684795,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":216684796,"package_name":"HDCytoData","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":216684797,"package_name":"CATALYST","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":16.90862586148352,"created_at":"2025-09-08T10:45:54.231Z","updated_at":"2025-10-07T08:24:08.804Z","avatar_url":"https://github.com/lmweber.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","functional-similarity","gene","gene-sets","pathway-analysis","similarity","similarity-measurement","mirror","hdf5","rhdf5"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61637","html_url":"https://science.ecosyste.ms/projects/61637"}