{"id":61644,"name":"TOP","description":null,"url":"https://github.com/harry25r/top","last_synced_at":"2025-09-08T10:46:54.513Z","repository":{"id":62631811,"uuid":"539343542","full_name":"Harry25R/TOP","owner":"Harry25R","description":null,"archived":false,"fork":false,"pushed_at":"2025-06-09T02:20:12.000Z","size":303,"stargazers_count":0,"open_issues_count":1,"forks_count":1,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2025-08-19T14:59:32.321Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Harry25R.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-09-21T06:41:25.000Z","updated_at":"2025-06-09T02:20:16.000Z","dependencies_parsed_at":"2025-06-09T03:32:25.627Z","dependency_job_id":null,"html_url":"https://github.com/Harry25R/TOP","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Harry25R/TOP","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Harry25R","download_url":"https://codeload.github.com/Harry25R/TOP/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274173419,"owners_count":25235197,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Harry25R","name":"Harry Robertson","uuid":"69441195","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/69441195?u=06ee26bae4d0be68067a96b7b47845c72f1a44a8\u0026v=4","repositories_count":2,"last_synced_at":"2023-07-11T00:28:04.016Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Harry25R","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-11T00:28:04.452Z","updated_at":"2023-07-11T00:28:04.452Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Harry25R","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Harry25R/repositories"},"packages":[{"id":8420907,"name":"TOP","ecosystem":"bioconductor","description":"TOP Constructs Transferable Model Across Gene Expression Platforms","homepage":"https://github.com/Harry25R/TOP ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/Harry25R/TOP","keywords_array":["GeneExpression","Software","Survival"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T15:06:01.872Z","latest_release_published_at":"2025-04-28T15:20:40.646Z","latest_release_number":"1.8.0","last_synced_at":"2025-08-19T14:08:51.300Z","created_at":"2023-10-12T15:05:59.622Z","updated_at":"2025-08-19T14:42:22.624Z","registry_url":"https://bioconductor.org/packages/TOP","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/TOP/inst/doc/TOP.pdf","metadata":{},"repo_metadata":{"id":62631811,"uuid":"539343542","full_name":"Harry25R/TOP","owner":"Harry25R","description":null,"archived":false,"fork":false,"pushed_at":"2025-06-09T02:20:12.000Z","size":303,"stargazers_count":0,"open_issues_count":1,"forks_count":1,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2025-07-11T11:46:28.824Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Harry25R.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-09-21T06:41:25.000Z","updated_at":"2025-06-09T02:20:16.000Z","dependencies_parsed_at":"2025-06-09T03:32:25.627Z","dependency_job_id":null,"html_url":"https://github.com/Harry25R/TOP","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Harry25R/TOP","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Harry25R","download_url":"https://codeload.github.com/Harry25R/TOP/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271170185,"owners_count":24711255,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-19T02:00:09.176Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"Harry25R","name":"Harry Robertson","uuid":"69441195","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/69441195?u=06ee26bae4d0be68067a96b7b47845c72f1a44a8\u0026v=4","repositories_count":2,"last_synced_at":"2023-07-11T00:28:04.016Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Harry25R","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-11T00:28:04.452Z","updated_at":"2023-07-11T00:28:04.452Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Harry25R","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Harry25R/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-19T14:42:22.624Z","dependent_packages_count":0,"downloads":4523,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":99.77578475336323,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":33.20610687022901,"forks_count":18.39080459770115,"docker_downloads_count":null,"average":30.274539244258676},"purl":"pkg:bioconductor/TOP","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/TOP","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/TOP","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/TOP/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-12T07:22:10.707Z","issues_count":15,"pull_requests_count":3,"avg_time_to_close_issue":4292730.6,"avg_time_to_close_pull_request":840.0,"issues_closed_count":15,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":0.26666666666666666,"avg_comments_per_pull_request":0.3333333333333333,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":3,"past_year_avg_time_to_close_issue":26070420.0,"past_year_avg_time_to_close_pull_request":840.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":0.3333333333333333,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/issues","maintainers":[{"login":"Harry25R","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Harry25R"},{"login":"nick-robo","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nick-robo"}],"active_maintainers":[{"login":"Harry25R","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Harry25R"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TOP/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TOP/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TOP/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TOP/related_packages","maintainers":[{"uuid":"harry.robertson@sydney.edu.au","login":null,"name":"Harry Robertson","email":"harry.robertson@sydney.edu.au","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-20T15:16:23.860Z","updated_at":"2023-11-20T15:16:23.860Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/harry.robertson@sydney.edu.au/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403527,"full_name":"Harry25R/TOP","default_branch":"devel","committers":[{"name":"Harry25R","email":"hrob6771@uni.sydney.edu.au","login":null,"count":159},{"name":"Nicholas Robertson","email":"nickrrrr@gmail.com","login":null,"count":92},{"name":"Harry Robertson","email":"69441195+Harry25R","login":"Harry25R","count":11}],"total_commits":262,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":87.33333333333333,"dds":0.39312977099236646,"past_year_committers":[{"name":"Harry25R","email":"hrob6771@uni.sydney.edu.au","login":null,"count":155},{"name":"Nicholas Robertson","email":"nickrrrr@gmail.com","login":null,"count":92},{"name":"Harry Robertson","email":"69441195+Harry25R","login":"Harry25R","count":11}],"past_year_total_commits":258,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":86.0,"past_year_dds":0.39922480620155043,"last_synced_at":"2023-10-25T13:17:25.200Z","last_synced_commit":"56599deed464d8f09370363094f9dd14825972fd","created_at":"2023-10-25T13:16:15.312Z","updated_at":"2023-10-25T13:17:25.201Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5481641,"commits_count":853635064,"contributors_count":31099484,"owners_count":907162,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Harry25R/TOP","html_url":"https://github.com/Harry25R/TOP","last_synced_at":"2025-08-19T14:45:02.647Z","status":"error","issues_count":15,"pull_requests_count":3,"avg_time_to_close_issue":4292730.6,"avg_time_to_close_pull_request":840.0,"issues_closed_count":15,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":0.26666666666666666,"avg_comments_per_pull_request":0.3333333333333333,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":3,"past_year_avg_time_to_close_issue":26070420.0,"past_year_avg_time_to_close_pull_request":840.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":0.3333333333333333,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"created_at":"2024-11-22T01:13:38.440Z","updated_at":"2025-09-01T23:28:45.177Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Harry25R%2FTOP/issues","issue_labels_count":{"documentation":7,"component:Frankenstein_CPOP":3,"component:PreProcess_Frank":3,"bug":2,"component:Performance":1,"component:Plot":1},"pull_request_labels_count":{"enhancement":3,"codex":3},"issue_author_associations_count":{"OWNER":7,"COLLABORATOR":7,"NONE":1},"pull_request_author_associations_count":{"OWNER":6},"issue_authors":{"nick-robo":7,"Harry25R":7,"ellispatrick":1},"pull_request_authors":{"Harry25R":6},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10021777,"issues_count":30401953,"pull_requests_count":90051100,"authors_count":10269412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"enhancement":3,"codex":3},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"OWNER":6},"past_year_issue_authors":{},"past_year_pull_request_authors":{"Harry25R":6},"maintainers":[{"login":"Harry25R","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Harry25R"},{"login":"nick-robo","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nick-robo"}],"active_maintainers":[{"login":"Harry25R","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Harry25R"}]},"events":{"total":{"IssuesEvent":1,"DeleteEvent":2,"IssueCommentEvent":1,"PushEvent":6,"PullRequestEvent":4,"CreateEvent":3},"last_year":{"IssuesEvent":1,"DeleteEvent":2,"IssueCommentEvent":1,"PushEvent":6,"PullRequestEvent":4,"CreateEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-01-23T06:00:15.854Z","updated_at":"2023-01-23T06:00:15.854Z","repository_link":"https://github.com/Harry25R/TOP/blob/devel/DESCRIPTION","dependencies":[{"id":7110335907,"package_name":"caret","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335908,"package_name":"CCA","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335909,"package_name":"ClassifyR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335910,"package_name":"CPOP","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335911,"package_name":"directPA","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335912,"package_name":"doParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335913,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335914,"package_name":"ggnewscale","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335915,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335916,"package_name":"ggraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335917,"package_name":"ggrepel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335918,"package_name":"ggthemes","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335919,"package_name":"glmnet","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335920,"package_name":"Hmisc","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335921,"package_name":"latex2exp","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335922,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335923,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335924,"package_name":"plotly","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335925,"package_name":"pROC","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335926,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335927,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335928,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335929,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335930,"package_name":"survival","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335931,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335932,"package_name":"tidygraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335933,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7110335934,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false}]}],"score":9.51576412590412,"created_at":"2025-09-08T10:45:54.254Z","updated_at":"2025-10-07T08:24:08.946Z","avatar_url":"https://github.com/Harry25R.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/61644","html_url":"https://science.ecosyste.ms/projects/61644"}