{"id":61682,"name":"SpliceWiz","description":"SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.","url":"https://github.com/alexchwong/splicewiz","last_synced_at":"2025-09-08T10:49:31.589Z","repository":{"id":38848127,"uuid":"471180701","full_name":"alexchwong/SpliceWiz","owner":"alexchwong","description":"SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.","archived":false,"fork":false,"pushed_at":"2025-03-12T21:07:36.000Z","size":10598,"stargazers_count":20,"open_issues_count":12,"forks_count":8,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-09-04T05:26:39.491Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/alexchwong.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-03-18T00:03:19.000Z","updated_at":"2025-08-01T17:21:08.000Z","dependencies_parsed_at":"2023-11-29T05:28:19.888Z","dependency_job_id":"32ed03f1-8b74-4fa2-bcf7-6097b4f1e057","html_url":"https://github.com/alexchwong/SpliceWiz","commit_stats":{"total_commits":663,"total_committers":3,"mean_commits":221.0,"dds":0.006033182503770718,"last_synced_commit":"bddac8959397f9b86b22360bfa0058b468cbe639"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/alexchwong/SpliceWiz","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/alexchwong","download_url":"https://codeload.github.com/alexchwong/SpliceWiz/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274173626,"owners_count":25235198,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"alexchwong","name":"Alex CH Wong","uuid":"80015046","kind":"user","description":"Research Officer","email":"","website":"https://www.raskolab.com.au/","location":"Centenary Institute","twitter":null,"company":"Gene and Stem Cell Therapy Program","icon_url":"https://avatars.githubusercontent.com/u/80015046?v=4","repositories_count":6,"last_synced_at":"2023-03-07T15:36:39.261Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/alexchwong","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-17T13:11:31.855Z","updated_at":"2023-03-07T15:36:39.265Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/alexchwong","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/alexchwong/repositories"},"packages":[{"id":8420787,"name":"SpliceWiz","ecosystem":"bioconductor","description":"interactive analysis and visualization of alternative splicing in R","homepage":"https://github.com/alexchwong/SpliceWiz ","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/alexchwong/SpliceWiz","keywords_array":["AlternativeSplicing","Coverage","DifferentialExpression","DifferentialSplicing","GUI","RNASeq","Sequencing","Software","Transcriptomics"],"namespace":null,"versions_count":11,"first_release_published_at":"2023-10-12T15:02:31.304Z","latest_release_published_at":"2025-05-28T17:00:50.537Z","latest_release_number":"1.10.1","last_synced_at":"2025-09-03T19:20:06.506Z","created_at":"2023-10-12T15:02:30.302Z","updated_at":"2025-09-04T05:10:34.503Z","registry_url":"https://bioconductor.org/packages/SpliceWiz","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/SpliceWiz/inst/doc/SpliceWiz.pdf","metadata":{},"repo_metadata":{"id":38848127,"uuid":"471180701","full_name":"alexchwong/SpliceWiz","owner":"alexchwong","description":"SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.","archived":false,"fork":false,"pushed_at":"2025-03-12T21:07:36.000Z","size":10598,"stargazers_count":20,"open_issues_count":12,"forks_count":8,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-08-02T22:47:16.504Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/alexchwong.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-03-18T00:03:19.000Z","updated_at":"2025-08-01T17:21:08.000Z","dependencies_parsed_at":"2023-11-29T05:28:19.888Z","dependency_job_id":"32ed03f1-8b74-4fa2-bcf7-6097b4f1e057","html_url":"https://github.com/alexchwong/SpliceWiz","commit_stats":{"total_commits":663,"total_committers":3,"mean_commits":221.0,"dds":0.006033182503770718,"last_synced_commit":"bddac8959397f9b86b22360bfa0058b468cbe639"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/alexchwong/SpliceWiz","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/alexchwong","download_url":"https://codeload.github.com/alexchwong/SpliceWiz/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273555459,"owners_count":25126316,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"alexchwong","name":"Alex CH Wong","uuid":"80015046","kind":"user","description":"Research Officer","email":"","website":"https://www.raskolab.com.au/","location":"Centenary Institute","twitter":null,"company":"Gene and Stem Cell Therapy Program","icon_url":"https://avatars.githubusercontent.com/u/80015046?v=4","repositories_count":6,"last_synced_at":"2023-03-07T15:36:39.261Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/alexchwong","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-17T13:11:31.855Z","updated_at":"2023-03-07T15:36:39.265Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/alexchwong","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/alexchwong/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-09-04T05:10:34.503Z","dependent_packages_count":0,"downloads":8255,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":92.51121076233184,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":33.20610687022901,"forks_count":15.267175572519085,"docker_downloads_count":null,"average":28.196898641015984},"purl":"pkg:bioconductor/SpliceWiz","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/SpliceWiz","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/SpliceWiz","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/SpliceWiz/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T08:57:38.153Z","issues_count":40,"pull_requests_count":41,"avg_time_to_close_issue":1929647.1379310344,"avg_time_to_close_pull_request":192520.75609756098,"issues_closed_count":29,"pull_requests_closed_count":41,"pull_request_authors_count":3,"issue_authors_count":33,"avg_comments_per_issue":3.25,"avg_comments_per_pull_request":0.04878048780487805,"merged_pull_requests_count":39,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":15,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":1450627.1666666667,"past_year_avg_time_to_close_pull_request":8.0,"past_year_issues_closed_count":6,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":14,"past_year_avg_comments_per_issue":1.7333333333333334,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/issues","maintainers":[{"login":"alexchwong","count":42,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexchwong"}],"active_maintainers":[{"login":"alexchwong","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexchwong"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SpliceWiz/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SpliceWiz/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SpliceWiz/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SpliceWiz/related_packages","maintainers":[{"uuid":"alexchwong.github@gmail.com","login":null,"name":"Alex Chit Hei Wong","email":"alexchwong.github@gmail.com","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2024-09-14T07:29:31.847Z","updated_at":"2024-09-14T07:29:31.847Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/alexchwong.github@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403628,"full_name":"alexchwong/SpliceWiz","default_branch":"main","committers":[{"name":"alexchwong","email":"80015046+alexchwong","login":"alexchwong","count":659},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"total_commits":663,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":221.0,"dds":0.006033182503770718,"past_year_committers":[{"name":"alexchwong","email":"80015046+alexchwong","login":"alexchwong","count":413},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"past_year_total_commits":417,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":139.0,"past_year_dds":0.00959232613908878,"last_synced_at":"2023-10-25T13:17:59.036Z","last_synced_commit":"bddac8959397f9b86b22360bfa0058b468cbe639","created_at":"2023-10-25T13:16:31.833Z","updated_at":"2023-10-25T13:17:59.037Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:13.651Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"alexchwong/SpliceWiz","html_url":"https://github.com/alexchwong/SpliceWiz","last_synced_at":"2025-08-31T08:57:38.153Z","status":null,"issues_count":40,"pull_requests_count":41,"avg_time_to_close_issue":1929647.1379310344,"avg_time_to_close_pull_request":192520.75609756098,"issues_closed_count":29,"pull_requests_closed_count":41,"pull_request_authors_count":3,"issue_authors_count":33,"avg_comments_per_issue":3.25,"avg_comments_per_pull_request":0.04878048780487805,"merged_pull_requests_count":39,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":15,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":1450627.1666666667,"past_year_avg_time_to_close_pull_request":8.0,"past_year_issues_closed_count":6,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":14,"past_year_avg_comments_per_issue":1.7333333333333334,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2024-04-21T00:06:02.752Z","updated_at":"2025-09-03T05:03:48.544Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexchwong%2FSpliceWiz/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":43},"pull_request_author_associations_count":{"OWNER":42,"NONE":2,"CONTRIBUTOR":1},"issue_authors":{"rezarahman12":5,"t3h4nt1chr15t":3,"GimenaA":2,"mmilevskiy":2,"DarioS":2,"dksenthil":1,"ajblatnik":1,"Desertodunas":1,"BALASUNDAR30":1,"jiaco":1,"droplet-lab":1,"anuradhareddi":1,"ZLS01":1,"michael-mazzucco":1,"clydeugene":1,"jojobmz":1,"Drosofriends":1,"jmkimmey":1,"SWCode132":1,"Omics66427":1,"akikuno":1,"mingzCHIU":1,"JaydenBeckwith":1,"chrismahony":1,"JarickW":1,"alicinwndlnd":1,"jh4yd":1,"sdimitrije":1,"NextGenSeek":1,"HenrikBengtsson":1,"mabinjw":1,"ehteshamuli":1,"cparsania":1,"docjim86":1},"pull_request_authors":{"alexchwong":42,"pekkarr":2,"cparsania":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10119188,"issues_count":31685420,"pull_requests_count":98653205,"authors_count":10709554,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":18},"past_year_pull_request_author_associations_count":{"OWNER":2},"past_year_issue_authors":{"t3h4nt1chr15t":3,"mmilevskiy":2,"ajblatnik":1,"anuradhareddi":1,"BALASUNDAR30":1,"docjim86":1,"Drosofriends":1,"ehteshamuli":1,"GimenaA":1,"JarickW":1,"JaydenBeckwith":1,"jmkimmey":1,"mingzCHIU":1,"NextGenSeek":1,"Omics66427":1},"past_year_pull_request_authors":{"alexchwong":2},"maintainers":[{"login":"alexchwong","count":42,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexchwong"}],"active_maintainers":[{"login":"alexchwong","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alexchwong"}]},"events":{"total":{"IssuesEvent":17,"WatchEvent":4,"IssueCommentEvent":15,"PushEvent":3,"ForkEvent":1},"last_year":{"IssuesEvent":17,"WatchEvent":4,"IssueCommentEvent":15,"PushEvent":3,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-11-06T04:28:51.130Z","updated_at":"2023-11-06T04:28:51.130Z","repository_link":"https://github.com/alexchwong/SpliceWiz/blob/main/DESCRIPTION","dependencies":[{"id":14313462565,"package_name":"NxtIRFdata","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14313462868,"package_name":"ompBAM","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462887,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462888,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462889,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462890,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462891,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462892,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462893,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462894,"package_name":"Rcpp","ecosystem":"cran","requirements":"\u003e= 1.0.5","direct":true,"kind":"imports","optional":false},{"id":14313462895,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462896,"package_name":"fst","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462906,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462907,"package_name":"AnnotationHub","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462908,"package_name":"BiocFileCache","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462909,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462914,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313462923,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313463134,"package_name":"BSgenome","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464252,"package_name":"DelayedArray","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464253,"package_name":"DelayedMatrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464254,"package_name":"genefilter","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464266,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464275,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464276,"package_name":"HDF5Array","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464277,"package_name":"htmltools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464278,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464279,"package_name":"patchwork","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313464357,"package_name":"pheatmap","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465234,"package_name":"progress","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465235,"package_name":"plotly","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465236,"package_name":"R.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465237,"package_name":"rhdf5","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465243,"package_name":"rtracklayer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465244,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465245,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465246,"package_name":"shiny","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465247,"package_name":"shinyFiles","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465262,"package_name":"shinyWidgets","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465300,"package_name":"shinydashboard","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465307,"package_name":"stringi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465308,"package_name":"rhandsontable","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465611,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465612,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465613,"package_name":"heatmaply","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465614,"package_name":"matrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465615,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465616,"package_name":"rvest","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313465617,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313465618,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313465619,"package_name":"openssl","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313465620,"package_name":"crayon","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313465621,"package_name":"splines","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313465622,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false},{"id":14313465623,"package_name":"DESeq2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313465692,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313465693,"package_name":"DoubleExpSeq","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313466457,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313466716,"package_name":"DBI","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313466717,"package_name":"GO.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313466726,"package_name":"fgsea","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313467880,"package_name":"Rsubread","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"cran","filepath":"inst/htslib_version/DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-11-06T04:29:09.241Z","updated_at":"2023-11-06T04:29:09.241Z","repository_link":"https://github.com/alexchwong/SpliceWiz/blob/main/inst/htslib_version/DESCRIPTION","dependencies":[{"id":14313468460,"package_name":"NxtIRFdata","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14313468461,"package_name":"ompBAM","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468462,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468463,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468464,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468465,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468466,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468467,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468468,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468469,"package_name":"Rcpp","ecosystem":"cran","requirements":"\u003e= 1.0.5","direct":true,"kind":"imports","optional":false},{"id":14313468470,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468471,"package_name":"fst","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468472,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468473,"package_name":"AnnotationHub","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468474,"package_name":"BiocFileCache","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468475,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468476,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468477,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468478,"package_name":"BSgenome","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468479,"package_name":"DelayedArray","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468480,"package_name":"DelayedMatrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468481,"package_name":"genefilter","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468482,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468483,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468484,"package_name":"HDF5Array","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468485,"package_name":"htmltools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468486,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468487,"package_name":"patchwork","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468488,"package_name":"pheatmap","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468489,"package_name":"progress","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468490,"package_name":"plotly","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468491,"package_name":"R.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468492,"package_name":"rhdf5","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468493,"package_name":"rtracklayer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468494,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468495,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468496,"package_name":"shiny","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468497,"package_name":"shinyFiles","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468498,"package_name":"shinyWidgets","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468499,"package_name":"shinydashboard","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468500,"package_name":"stringi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468501,"package_name":"rhandsontable","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468502,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468503,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468504,"package_name":"heatmaply","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468505,"package_name":"matrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468506,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468507,"package_name":"rvest","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14313468508,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468509,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468510,"package_name":"openssl","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468511,"package_name":"crayon","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468512,"package_name":"splines","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468513,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false},{"id":14313468514,"package_name":"DESeq2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468515,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468516,"package_name":"DoubleExpSeq","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468517,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468518,"package_name":"DBI","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468519,"package_name":"GO.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468520,"package_name":"fgsea","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14313468521,"package_name":"Rsubread","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":13.58304367918918,"created_at":"2025-09-08T10:46:10.818Z","updated_at":"2025-10-07T08:24:09.661Z","avatar_url":"https://github.com/alexchwong.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-packages","grna-sequence"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61682","html_url":"https://science.ecosyste.ms/projects/61682"}