{"id":61688,"name":"nucleosim","description":"Bioconductor Package - Simulate synthetic nucleosome maps","url":"https://github.com/arnauddroitlab/nucleosim","last_synced_at":"2025-09-08T10:49:11.258Z","repository":{"id":35378167,"uuid":"39641400","full_name":"ArnaudDroitLab/nucleoSim","owner":"ArnaudDroitLab","description":"Bioconductor Package - Simulate synthetic nucleosome maps","archived":false,"fork":false,"pushed_at":"2022-03-16T02:01:03.000Z","size":197,"stargazers_count":2,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-08-28T05:34:21.504Z","etag":null,"topics":["bioconductor","nucleosome-maps","nucleosomes","r","simulation","simulator","synthetic-nucleosomes"],"latest_commit_sha":null,"homepage":"http://bioconductor.org/packages/nucleoSim/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ArnaudDroitLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-07-24T15:20:10.000Z","updated_at":"2022-03-16T02:01:09.000Z","dependencies_parsed_at":"2022-09-15T13:12:01.293Z","dependency_job_id":null,"html_url":"https://github.com/ArnaudDroitLab/nucleoSim","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ArnaudDroitLab/nucleoSim","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ArnaudDroitLab%2FnucleoSim","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ArnaudDroitLab%2FnucleoSim/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ArnaudDroitLab%2FnucleoSim/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ArnaudDroitLab%2FnucleoSim/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ArnaudDroitLab","download_url":"https://codeload.github.com/ArnaudDroitLab/nucleoSim/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ArnaudDroitLab%2FnucleoSim/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274173635,"owners_count":25235198,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ArnaudDroitLab","name":"AD Lab","uuid":"15255771","kind":"organization","description":"","email":null,"website":"http://bioinformatique.genome.ulaval.ca","location":"Quebec City","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/15255771?v=4","repositories_count":25,"last_synced_at":"2023-03-01T16:15:20.575Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ArnaudDroitLab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T12:59:35.285Z","updated_at":"2023-03-01T16:15:20.584Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ArnaudDroitLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ArnaudDroitLab/repositories"},"packages":null,"commits":{"id":1403317,"full_name":"arnauddroitlab/nucleoSim","default_branch":"master","committers":[{"name":"adeschen","email":"adeschen@hotmail.com","login":null,"count":126},{"name":"Astrid Deschenes","email":"adeschen","login":"adeschen","count":14},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":12},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":6},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":4},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":null,"count":4},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":4},{"name":"d.tenenbaum","email":"d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":4},{"name":"Astrid Louise Deschenes","email":"Astrid-Louise.Deschenes@crchudequebec.ulaval.ca","login":null,"count":4},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":4},{"name":"hpages@fhcrc.org","email":"hpages@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":2},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1},{"name":"Pascal Belleau","email":"pascal_belleau@hotmail.com","login":null,"count":1},{"name":"mtmorgan@fhcrc.org","email":"mtmorgan@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1}],"total_commits":187,"total_committers":14,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":13.357142857142858,"dds":0.3262032085561497,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2024-01-29T06:09:14.049Z","last_synced_commit":"e73224c5f07f71d845cb23883d57dde423c3d87a","created_at":"2023-10-25T13:16:02.056Z","updated_at":"2024-01-29T06:09:14.049Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnauddroitlab%2FnucleoSim/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5481641,"commits_count":853635064,"contributors_count":31099484,"owners_count":907162,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"arnauddroitlab/nucleosim","html_url":"https://github.com/arnauddroitlab/nucleosim","last_synced_at":"2025-08-27T22:39:20.250Z","status":"error","issues_count":0,"pull_requests_count":2,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":470.0,"issues_closed_count":0,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.5,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-11-05T00:08:50.091Z","updated_at":"2025-08-27T22:39:20.251Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnauddroitlab%2Fnucleosim","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnauddroitlab%2Fnucleosim/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"CONTRIBUTOR":2},"issue_authors":{},"pull_request_authors":{"adeschen":1,"belleau":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-28T00:00:20.451Z","repositories_count":8341616,"issues_count":15640449,"pull_requests_count":37241097,"authors_count":5664792,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["bioconductor","nucleosome-maps","nucleosomes","r","simulation","simulator","synthetic-nucleosomes"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-15T13:12:01.175Z","updated_at":"2022-09-15T13:12:01.175Z","repository_link":"https://github.com/ArnaudDroitLab/nucleoSim/blob/master/DESCRIPTION","dependencies":[{"id":4942218185,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4942218186,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4942218187,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4942218188,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4942218189,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4942218190,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4942218191,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4942218192,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4942218193,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4942218194,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":3.332204510175204,"created_at":"2025-09-08T10:46:10.837Z","updated_at":"2025-10-07T08:24:09.772Z","avatar_url":"https://github.com/ArnaudDroitLab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["http://dx.doi.org/10.1515/sagmb-2014-0098","http://dx.doi.org/10.1093/bioinformatics/btr345"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","hdf5","rhdf5","derfinder","rnaseq","core-package","deseq2","bioinformatics","junction","illumina"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61688","html_url":"https://science.ecosyste.ms/projects/61688"}