{"id":61751,"name":"sights","description":"SIGHTS is an R-package for analysing High-Throughput Screening data. It is available through Bioconductor. Please see the README below for further links and information.","url":"https://github.com/eg-r/sights","last_synced_at":"2025-09-08T12:32:49.132Z","repository":{"id":54805696,"uuid":"61658064","full_name":"eg-r/sights","owner":"eg-r","description":"SIGHTS is an R-package for analysing High-Throughput Screening data. It is available through Bioconductor. Please see the README below for further links and information.","archived":false,"fork":false,"pushed_at":"2023-01-07T01:19:39.000Z","size":3362,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2024-11-22T01:11:33.577Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://bioconductor.org/packages/sights/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/eg-r.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-06-21T18:41:33.000Z","updated_at":"2023-01-07T01:18:44.000Z","dependencies_parsed_at":"2023-02-06T10:30:50.147Z","dependency_job_id":null,"html_url":"https://github.com/eg-r/sights","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/eg-r/sights","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eg-r","download_url":"https://codeload.github.com/eg-r/sights/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174107,"owners_count":25235202,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"eg-r","name":"Elika Garg","uuid":"12281198","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/12281198?v=4","repositories_count":2,"last_synced_at":"2023-06-30T21:37:05.360Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/eg-r","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-06-30T21:37:05.362Z","updated_at":"2023-06-30T21:37:05.362Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eg-r","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eg-r/repositories"},"packages":[{"id":8420707,"name":"sights","ecosystem":"bioconductor","description":"Statistics and dIagnostic Graphs for HTS","homepage":"https://eg-r.github.io/sights/ ","licenses":"GPL-3 | file LICENSE","normalized_licenses":["AML"],"repository_url":"https://github.com/eg-r/sights","keywords_array":["BatchEffect","CellBasedAssays","ImmunoOncology","MicrotitrePlateAssay","MultipleComparison","Normalization","Preprocessing","QualityControl","Software","Visualization"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T15:00:28.417Z","latest_release_published_at":"2025-04-28T16:03:01.200Z","latest_release_number":"1.34.0","last_synced_at":"2025-08-28T21:20:24.589Z","created_at":"2023-10-12T15:00:28.089Z","updated_at":"2025-08-28T21:20:24.589Z","registry_url":"https://bioconductor.org/packages/sights","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/sights/inst/doc/sights.pdf","metadata":{},"repo_metadata":{"uuid":"61658064","full_name":"eg-r/sights","owner":"eg-r","description":"SIGHTS is an R-package for analysing High-Throughput Screening data. It is available through Bioconductor. Please see the README below for further links and information.","archived":false,"fork":false,"pushed_at":"2023-01-07T01:19:39.000Z","size":3362,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2023-10-25T13:16:41.412Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://bioconductor.org/packages/sights/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/eg-r.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-06-21T18:41:33.000Z","updated_at":"2023-01-07T01:18:44.000Z","dependencies_parsed_at":"2023-02-06T10:30:50.147Z","dependency_job_id":null,"html_url":"https://github.com/eg-r/sights","commit_stats":null,"previous_names":[],"tags_count":0,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eg-r","download_url":"https://codeload.github.com/eg-r/sights/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":172211712,"owners_count":9796633,"icon_url":"https://github.com/github.png","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"eg-r","name":"Elika Garg","uuid":"12281198","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/12281198?v=4","repositories_count":2,"last_synced_at":"2023-06-30T21:37:05.360Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/eg-r","created_at":"2023-06-30T21:37:05.362Z","updated_at":"2023-06-30T21:37:05.362Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eg-r","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/eg-r/repositories"},"tags":[]},"repo_metadata_updated_at":"2023-11-20T12:40:56.305Z","dependent_packages_count":0,"downloads":14414,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":56.412556053811656,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":33.20610687022901,"forks_count":18.39080459770115,"docker_downloads_count":null,"average":21.60189350434836},"purl":"pkg:bioconductor/sights","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/sights","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/sights","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/sights/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/sights/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/sights/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/sights/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/sights/related_packages","maintainers":[{"uuid":"elika.garg@mail.mcgill.ca","login":null,"name":"Elika Garg","email":"elika.garg@mail.mcgill.ca","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-20T12:47:36.932Z","updated_at":"2023-11-20T12:47:36.932Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/elika.garg@mail.mcgill.ca/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403411,"full_name":"eg-r/sights","default_branch":"master","committers":[{"name":"Elika Garg","email":"elika.garg@mail.mcgill.ca","login":null,"count":6},{"name":"Elika Garg","email":"eg-r","login":"eg-r","count":4},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":4},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":2},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1}],"total_commits":17,"total_committers":5,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":3.4,"dds":0.6470588235294117,"past_year_committers":[{"name":"Elika Garg","email":"eg-r","login":"eg-r","count":2}],"past_year_total_commits":2,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:16:45.403Z","last_synced_commit":"c59b74e2f05b440721ba74f81f65f18a54718437","created_at":"2023-10-25T13:16:09.249Z","updated_at":"2023-10-25T13:16:45.404Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5481641,"commits_count":853635064,"contributors_count":31099484,"owners_count":907162,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"eg-r/sights","html_url":"https://github.com/eg-r/sights","last_synced_at":"2024-11-24T01:06:49.048Z","status":null,"issues_count":1,"pull_requests_count":1,"avg_time_to_close_issue":35085306.0,"avg_time_to_close_pull_request":19.0,"issues_closed_count":1,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":2.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-22T01:10:33.753Z","updated_at":"2024-11-24T01:06:49.048Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/eg-r%2Fsights/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{"OWNER":1},"issue_authors":{"erinshellman":1},"pull_request_authors":{"eg-r":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.204Z","repositories_count":8423013,"issues_count":19923133,"pull_requests_count":48661976,"authors_count":6870572,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"eg-r","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/eg-r"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-14T03:20:55.200Z","updated_at":"2022-08-14T03:20:55.200Z","repository_link":"https://github.com/eg-r/sights/blob/master/DESCRIPTION","dependencies":[{"id":1502777960,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.3","direct":true,"kind":"depends","optional":false},{"id":1502777961,"package_name":"MASS","ecosystem":"cran","requirements":"\u003e= 7.3","direct":true,"kind":"imports","optional":false},{"id":1502777962,"package_name":"qvalue","ecosystem":"cran","requirements":"\u003e= 2.2","direct":true,"kind":"imports","optional":false},{"id":1502777963,"package_name":"ggplot2","ecosystem":"cran","requirements":"\u003e= 2.0","direct":true,"kind":"imports","optional":false},{"id":1502777964,"package_name":"reshape2","ecosystem":"cran","requirements":"\u003e=1.4","direct":true,"kind":"imports","optional":false},{"id":1502777965,"package_name":"lattice","ecosystem":"cran","requirements":"\u003e= 0.2","direct":true,"kind":"imports","optional":false},{"id":1502777966,"package_name":"stats","ecosystem":"cran","requirements":"\u003e= 3.3","direct":true,"kind":"imports","optional":false},{"id":1502777967,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1502777968,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1502777969,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1502777970,"package_name":"ggthemes","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1502777971,"package_name":"gridExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1502777972,"package_name":"xlsx","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-08T10:46:26.735Z","updated_at":"2025-10-07T08:24:10.920Z","avatar_url":"https://github.com/eg-r.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","genomics","gene","taxonomy","microbiome","rna-seq","peptides","digest","cleavage","vignette"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61751","html_url":"https://science.ecosyste.ms/projects/61751"}