{"id":61793,"name":"SeqSQC","description":null,"url":"https://github.com/liubuntu/seqsqc","last_synced_at":"2025-09-08T12:33:23.667Z","repository":{"id":56035689,"uuid":"240587303","full_name":"Liubuntu/SeqSQC","owner":"Liubuntu","description":null,"archived":false,"fork":false,"pushed_at":"2024-04-12T13:59:07.000Z","size":4834,"stargazers_count":0,"open_issues_count":2,"forks_count":1,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-09-04T01:38:22.473Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Liubuntu.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-02-14T19:50:18.000Z","updated_at":"2024-04-09T16:10:53.000Z","dependencies_parsed_at":"2025-09-04T01:38:23.773Z","dependency_job_id":"c3199f45-4641-4d10-956d-fc8951ae089e","html_url":"https://github.com/Liubuntu/SeqSQC","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Liubuntu/SeqSQC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Liubuntu","download_url":"https://codeload.github.com/Liubuntu/SeqSQC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174106,"owners_count":25235202,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Liubuntu","name":"Qian Liu","uuid":"12683977","kind":"user","description":"Assistant Professor in Department of Biostats \u0026 Bioinfo\r\nAlumni @Bioconductor Core Team","email":"","website":"https://www.roswellpark.org/qian-liu","location":"Buffalo","twitter":"QianLiu28878838","company":"Roswell Park Comprehensive Cancer Center","icon_url":"https://avatars.githubusercontent.com/u/12683977?u=23932833b02b43b2bb44d880b3cd1692e0e298b8\u0026v=4","repositories_count":3,"last_synced_at":"2023-03-02T04:40:24.607Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Liubuntu","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T22:37:03.165Z","updated_at":"2023-03-02T04:40:24.615Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Liubuntu","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Liubuntu/repositories"},"packages":[{"id":8420688,"name":"SeqSQC","ecosystem":"bioconductor","description":"A bioconductor package for sample quality check with next generation sequencing data","homepage":"https://github.com/Liubuntu/SeqSQC ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/Liubuntu/SeqSQC","keywords_array":["Experiment Data","Genome","Homo_sapiens_Data","Project1000genomes","Sequencing Data","Software"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T14:59:57.111Z","latest_release_published_at":"2025-05-14T01:46:51.909Z","latest_release_number":"1.30.0","last_synced_at":"2025-09-04T01:39:47.173Z","created_at":"2023-10-12T14:59:56.911Z","updated_at":"2025-09-04T13:15:37.902Z","registry_url":"https://bioconductor.org/packages/SeqSQC","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/SeqSQC/inst/doc/SeqSQC.pdf","metadata":{},"repo_metadata":{"id":56035689,"uuid":"240587303","full_name":"Liubuntu/SeqSQC","owner":"Liubuntu","description":null,"archived":false,"fork":false,"pushed_at":"2024-04-12T13:59:07.000Z","size":4834,"stargazers_count":0,"open_issues_count":2,"forks_count":1,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-09-04T01:38:22.473Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Liubuntu.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-02-14T19:50:18.000Z","updated_at":"2024-04-09T16:10:53.000Z","dependencies_parsed_at":"2025-09-04T01:38:23.773Z","dependency_job_id":"c3199f45-4641-4d10-956d-fc8951ae089e","html_url":"https://github.com/Liubuntu/SeqSQC","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Liubuntu/SeqSQC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Liubuntu","download_url":"https://codeload.github.com/Liubuntu/SeqSQC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273613932,"owners_count":25137247,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"Liubuntu","name":"Qian Liu","uuid":"12683977","kind":"user","description":"Assistant Professor in Department of Biostats \u0026 Bioinfo\r\nAlumni @Bioconductor Core Team","email":"","website":"https://www.roswellpark.org/qian-liu","location":"Buffalo","twitter":"QianLiu28878838","company":"Roswell Park Comprehensive Cancer Center","icon_url":"https://avatars.githubusercontent.com/u/12683977?u=23932833b02b43b2bb44d880b3cd1692e0e298b8\u0026v=4","repositories_count":3,"last_synced_at":"2023-03-02T04:40:24.607Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Liubuntu","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T22:37:03.165Z","updated_at":"2023-03-02T04:40:24.615Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Liubuntu","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Liubuntu/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-09-04T13:15:37.902Z","dependent_packages_count":0,"downloads":null,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":62.51319957761352,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":20.83773319253784},"purl":"pkg:bioconductor/SeqSQC","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/SeqSQC","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/SeqSQC","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/SeqSQC/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-19T23:44:41.674Z","issues_count":2,"pull_requests_count":1,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":105994770.0,"issues_closed_count":0,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/liubuntu%2Fseqsqc/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SeqSQC/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SeqSQC/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SeqSQC/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/SeqSQC/related_packages","maintainers":[{"uuid":"qliu7@buffalo.edu","login":null,"name":"Qian Liu","email":"qliu7@buffalo.edu","url":null,"packages_count":3,"html_url":null,"role":null,"created_at":"2023-11-20T13:21:53.175Z","updated_at":"2023-11-20T13:21:53.175Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/qliu7@buffalo.edu/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403444,"full_name":"Liubuntu/SeqSQC","default_branch":"master","committers":[{"name":"Qian Liu","email":"qliu7@buffalo.edu","login":null,"count":26},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":4},{"name":"Qian Liu","email":"liuqian.pumc@gmail.com","login":null,"count":3},{"name":"liubuntu","email":"hq@live.cn","login":null,"count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":2},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":null,"count":1}],"total_commits":42,"total_committers":8,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":5.25,"dds":0.38095238095238093,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:16:56.792Z","last_synced_commit":"3527554184d8747d898057fc7af883ea6b502d0d","created_at":"2023-10-25T13:16:10.823Z","updated_at":"2023-10-25T13:16:56.793Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Liubuntu%2FSeqSQC/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5481641,"commits_count":853635064,"contributors_count":31099484,"owners_count":907162,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"liubuntu/seqsqc","html_url":"https://github.com/liubuntu/seqsqc","last_synced_at":"2025-08-19T23:44:41.674Z","status":"error","issues_count":2,"pull_requests_count":1,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":105994770.0,"issues_closed_count":0,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-11T11:57:13.623Z","updated_at":"2025-09-01T09:28:48.309Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/liubuntu%2Fseqsqc","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/liubuntu%2Fseqsqc/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":2},"pull_request_author_associations_count":{"NONE":1,"CONTRIBUTOR":1},"issue_authors":{"tinu-t":1,"seifudd":1},"pull_request_authors":{"hubentu":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164087,"issues_count":31988492,"pull_requests_count":100218704,"authors_count":10728235,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-15T11:50:53.217Z","updated_at":"2022-08-15T11:50:53.217Z","repository_link":"https://github.com/Liubuntu/SeqSQC/blob/master/DESCRIPTION","dependencies":[{"id":1778062298,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.4","direct":true,"kind":"depends","optional":false},{"id":1778062299,"package_name":"ExperimentHub","ecosystem":"cran","requirements":"\u003e= 1.3.7","direct":true,"kind":"depends","optional":false},{"id":1778062300,"package_name":"SNPRelate","ecosystem":"cran","requirements":"\u003e= 1.10.2","direct":true,"kind":"depends","optional":false},{"id":1778062301,"package_name":"e1071","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062302,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062303,"package_name":"gdsfmt","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062304,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062305,"package_name":"GGally","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062306,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062307,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062308,"package_name":"rbokeh","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062309,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062310,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062311,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062312,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062313,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062314,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1778062315,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1778062316,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1778062317,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":2.772588722239781,"created_at":"2025-09-08T10:46:39.989Z","updated_at":"2025-10-07T08:24:11.622Z","avatar_url":"https://github.com/Liubuntu.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","genomics","gene","proteomics","htmlwidgets","core-package","tumor-mutational-burden","tumor-heterogeneity","integrative-analysis","bioc"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61793","html_url":"https://science.ecosyste.ms/projects/61793"}