{"id":61802,"name":"gg4way","description":"Repository for the gg4way Bioconductor package","url":"https://github.com/ben-laufer/gg4way","last_synced_at":"2025-09-08T12:33:32.787Z","repository":{"id":191709931,"uuid":"685233423","full_name":"ben-laufer/gg4way","owner":"ben-laufer","description":"Repository for the gg4way Bioconductor package","archived":false,"fork":false,"pushed_at":"2025-07-10T17:34:50.000Z","size":4070,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-08-14T07:51:36.516Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/gg4way","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ben-laufer.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-08-30T19:41:55.000Z","updated_at":"2025-07-10T17:33:03.000Z","dependencies_parsed_at":"2023-10-17T01:23:38.723Z","dependency_job_id":"9959cba9-4628-40cd-b23c-e16ca0e8e6e0","html_url":"https://github.com/ben-laufer/gg4way","commit_stats":null,"previous_names":["ben-laufer/gg4way"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ben-laufer/gg4way","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ben-laufer","download_url":"https://codeload.github.com/ben-laufer/gg4way/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174106,"owners_count":25235202,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ben-laufer","name":"Ben Laufer","uuid":"43450458","kind":"user","description":"Principal Scientist in the Department of OMNI Bioinformatics at Genentech. ","email":"","website":"https://benlaufer.com","location":"San Francisco, CA","twitter":"laufer_ben","company":"Genentech","icon_url":"https://avatars.githubusercontent.com/u/43450458?u=2e1b4089e2cfc689129824269e6131771826686b\u0026v=4","repositories_count":2,"last_synced_at":"2023-06-28T19:37:50.358Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ben-laufer","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-06-28T19:37:50.617Z","updated_at":"2023-06-28T19:37:50.617Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ben-laufer","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ben-laufer/repositories"},"packages":[{"id":8489164,"name":"gg4way","ecosystem":"bioconductor","description":"4way Plots of Differential Expression","homepage":"https://github.com/ben-laufer/gg4way ","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/ben-laufer/gg4way","keywords_array":["DifferentialExpression","GeneExpression","RNASeq","Sequencing","SingleCell","Software","Transcription","Visualization"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-26T02:21:09.934Z","latest_release_published_at":"2025-08-14T01:33:47.704Z","latest_release_number":"1.6.1","last_synced_at":"2025-08-14T01:33:57.368Z","created_at":"2023-10-26T02:21:07.882Z","updated_at":"2025-08-14T07:51:07.464Z","registry_url":"https://bioconductor.org/packages/gg4way","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/gg4way/inst/doc/gg4way.pdf","metadata":{},"repo_metadata":{"id":191709931,"uuid":"685233423","full_name":"ben-laufer/gg4way","owner":"ben-laufer","description":"Repository for the gg4way Bioconductor package","archived":false,"fork":false,"pushed_at":"2025-07-10T17:34:50.000Z","size":4070,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-07-10T23:46:14.943Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/gg4way","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ben-laufer.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-08-30T19:41:55.000Z","updated_at":"2025-07-10T17:33:03.000Z","dependencies_parsed_at":"2023-10-17T01:23:38.723Z","dependency_job_id":"9959cba9-4628-40cd-b23c-e16ca0e8e6e0","html_url":"https://github.com/ben-laufer/gg4way","commit_stats":null,"previous_names":["ben-laufer/gg4way"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ben-laufer/gg4way","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ben-laufer","download_url":"https://codeload.github.com/ben-laufer/gg4way/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270385367,"owners_count":24574546,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-14T02:00:10.309Z","response_time":75,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"ben-laufer","name":"Ben Laufer","uuid":"43450458","kind":"user","description":"Principal Scientist in the Department of OMNI Bioinformatics at Genentech. ","email":"","website":"https://benlaufer.com","location":"San Francisco, CA","twitter":"laufer_ben","company":"Genentech","icon_url":"https://avatars.githubusercontent.com/u/43450458?u=2e1b4089e2cfc689129824269e6131771826686b\u0026v=4","repositories_count":2,"last_synced_at":"2023-06-28T19:37:50.358Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ben-laufer","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-06-28T19:37:50.617Z","updated_at":"2023-06-28T19:37:50.617Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ben-laufer","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ben-laufer/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-14T07:51:07.464Z","dependent_packages_count":0,"downloads":4464,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":98.34710743801654,"dependent_repos_count":0.0,"dependent_packages_count":31.70943888647238,"stargazers_count":36.92909960852545,"forks_count":30.100043497172685,"docker_downloads_count":null,"average":39.41713788603741},"purl":"pkg:bioconductor/gg4way","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/gg4way","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/gg4way","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/gg4way/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-12T04:00:26.112Z","issues_count":0,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gg4way/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gg4way/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gg4way/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/gg4way/related_packages","maintainers":[{"uuid":"blaufer@gmail.com","login":null,"name":"Benjamin I Laufer","email":"blaufer@gmail.com","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-11-26T02:32:44.485Z","updated_at":"2023-11-26T02:32:44.485Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/blaufer@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":11003341,"full_name":"ben-laufer/gg4way","default_branch":"master","committers":[{"name":"Ben Laufer","email":"laufer.benjamin@gene.com","login":null,"count":9},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":4},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty@users.noreply.github.com","login":null,"count":2}],"total_commits":17,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":4.25,"dds":0.47058823529411764,"past_year_committers":[{"name":"Ben Laufer","email":"laufer.benjamin@gene.com","login":null,"count":3},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"past_year_total_commits":7,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.3333333333333335,"past_year_dds":0.5714285714285714,"last_synced_at":"2025-09-08T10:58:36.152Z","last_synced_commit":"7ae4e96a0f3c7fd79c9023cc3a4aa984b2688575","created_at":"2025-09-08T10:54:54.651Z","updated_at":"2025-09-08T10:58:33.238Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"ben-laufer/gg4way","html_url":"https://github.com/ben-laufer/gg4way","last_synced_at":"2025-08-14T19:28:11.734Z","status":"error","issues_count":0,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-22T01:10:17.104Z","updated_at":"2025-08-14T19:28:11.735Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ben-laufer%2Fgg4way/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164087,"issues_count":31988492,"pull_requests_count":100218704,"authors_count":10728235,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"PushEvent":3,"CreateEvent":2},"last_year":{"PushEvent":3,"CreateEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-10-17T01:23:30.382Z","updated_at":"2023-10-17T01:23:30.382Z","repository_link":"https://github.com/ben-laufer/gg4way/blob/devel/DESCRIPTION","dependencies":[{"id":14251208631,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.3.0","direct":true,"kind":"depends","optional":false},{"id":14251208632,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14251208722,"package_name":"DESeq2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251208812,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251208927,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251208954,"package_name":"ggrepel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251208955,"package_name":"glue","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209048,"package_name":"janitor","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209049,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209467,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209528,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209529,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209530,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209531,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209532,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209533,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209534,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209724,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14251209725,"package_name":"airway","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14251209908,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14251209909,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14251209997,"package_name":"org.Hs.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14251210329,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14251210413,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-08T10:46:40.011Z","updated_at":"2025-10-07T08:24:11.802Z","avatar_url":"https://github.com/ben-laufer.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["genomics","bioconductor-package","gene"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61802","html_url":"https://science.ecosyste.ms/projects/61802"}