{"id":61805,"name":"GEOquery","description":"The bridge between the NCBI Gene Expression Omnibus and Bioconductor","url":"https://github.com/seandavi/geoquery","last_synced_at":"2025-09-08T12:33:33.630Z","repository":{"id":9600559,"uuid":"11521881","full_name":"seandavi/GEOquery","owner":"seandavi","description":"The bridge between the NCBI Gene Expression Omnibus and Bioconductor","archived":false,"fork":false,"pushed_at":"2025-09-02T21:12:00.000Z","size":21254,"stargazers_count":98,"open_issues_count":25,"forks_count":36,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-09-02T23:15:05.215Z","etag":null,"topics":["bioconductor","bioinformatics","data-science","genomics","ncbi-geo","r","rstats"],"latest_commit_sha":null,"homepage":"http://seandavi.github.io/GEOquery/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/seandavi.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2013-07-19T06:44:10.000Z","updated_at":"2025-09-02T21:12:04.000Z","dependencies_parsed_at":"2022-07-24T21:02:17.109Z","dependency_job_id":"31dde295-9e90-4731-991e-9d633dee63e4","html_url":"https://github.com/seandavi/GEOquery","commit_stats":{"total_commits":806,"total_committers":37,"mean_commits":"21.783783783783782","dds":0.718362282878412,"last_synced_commit":"58225fa5a21a016da26588a9d3d083e1d3ba2106"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/seandavi/GEOquery","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seandavi","download_url":"https://codeload.github.com/seandavi/GEOquery/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174106,"owners_count":25235202,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"seandavi","name":"Sean Davis","uuid":"92435","kind":"user","description":"- Pediatric oncologist\r\n- Cancer researcher\r\n- Data scientist\r\n- Community organizer","email":"","website":"https://seandavi.github.io/","location":"Bethesda, MD, 20892, USA","twitter":null,"company":"National Cancer Institute, National Institutes of Health","icon_url":"https://avatars.githubusercontent.com/u/92435?u=28e32c04815f036ba5197a8cb79a69a34dd47072\u0026v=4","repositories_count":87,"last_synced_at":"2023-03-10T20:02:38.276Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/seandavi","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T19:15:46.352Z","updated_at":"2023-03-10T20:02:38.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seandavi","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seandavi/repositories"},"packages":[{"id":8419521,"name":"GEOquery","ecosystem":"bioconductor","description":"Get data from NCBI Gene Expression Omnibus (GEO)","homepage":"https://github.com/seandavi/GEOquery http://seandavi.github.io/GEOquery http://seandavi.github.io/GEOquery/ ","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/seandavi/GEOquery","keywords_array":["DataImport","Microarray","OneChannel","SAGE","Software","TwoChannel"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:36:23.791Z","latest_release_published_at":"2025-04-17T14:00:28.757Z","latest_release_number":"2.76.0","last_synced_at":"2025-09-08T03:31:08.274Z","created_at":"2023-10-12T14:36:23.099Z","updated_at":"2025-09-08T03:31:08.274Z","registry_url":"https://bioconductor.org/packages/GEOquery","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/GEOquery/inst/doc/GEOquery.pdf","metadata":{},"repo_metadata":{"id":9600559,"uuid":"11521881","full_name":"seandavi/GEOquery","owner":"seandavi","description":"The bridge between the NCBI Gene Expression Omnibus and Bioconductor","archived":false,"fork":false,"pushed_at":"2025-09-02T21:12:00.000Z","size":21254,"stargazers_count":98,"open_issues_count":25,"forks_count":36,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-09-02T23:15:05.215Z","etag":null,"topics":["bioconductor","bioinformatics","data-science","genomics","ncbi-geo","r","rstats"],"latest_commit_sha":null,"homepage":"http://seandavi.github.io/GEOquery/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/seandavi.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2013-07-19T06:44:10.000Z","updated_at":"2025-09-02T21:12:04.000Z","dependencies_parsed_at":"2022-07-24T21:02:17.109Z","dependency_job_id":"31dde295-9e90-4731-991e-9d633dee63e4","html_url":"https://github.com/seandavi/GEOquery","commit_stats":{"total_commits":806,"total_committers":37,"mean_commits":"21.783783783783782","dds":0.718362282878412,"last_synced_commit":"58225fa5a21a016da26588a9d3d083e1d3ba2106"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/seandavi/GEOquery","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seandavi","download_url":"https://codeload.github.com/seandavi/GEOquery/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273878329,"owners_count":25184275,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-06T02:00:13.247Z","response_time":2576,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"seandavi","name":"Sean Davis","uuid":"92435","kind":"user","description":"- Pediatric oncologist\r\n- Cancer researcher\r\n- Data scientist\r\n- Community organizer","email":"","website":"https://seandavi.github.io/","location":"Bethesda, MD, 20892, USA","twitter":null,"company":"National Cancer Institute, National Institutes of Health","icon_url":"https://avatars.githubusercontent.com/u/92435?u=28e32c04815f036ba5197a8cb79a69a34dd47072\u0026v=4","repositories_count":87,"last_synced_at":"2023-03-10T20:02:38.276Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/seandavi","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T19:15:46.352Z","updated_at":"2023-03-10T20:02:38.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seandavi","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seandavi/repositories"},"tags":[{"name":"2.47.5","sha":"23bde6f8b91b581dca86822872f04e0bd0fa9289","kind":"commit","published_at":"2017-11-10T19:39:23.000Z","download_url":"https://codeload.github.com/seandavi/GEOquery/tar.gz/2.47.5","html_url":"https://github.com/seandavi/GEOquery/releases/tag/2.47.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/seandavi/GEOquery@2.47.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/tags/2.47.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/tags/2.47.5/manifests"},{"name":"2.47.4","sha":"d5db1a4b3fd61fc7a24fad4507237a2377928ace","kind":"commit","published_at":"2017-11-10T18:17:21.000Z","download_url":"https://codeload.github.com/seandavi/GEOquery/tar.gz/2.47.4","html_url":"https://github.com/seandavi/GEOquery/releases/tag/2.47.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/seandavi/GEOquery@2.47.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/tags/2.47.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/tags/2.47.4/manifests"}]},"repo_metadata_updated_at":"2025-09-06T08:37:13.551Z","dependent_packages_count":47,"downloads":2138035,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":1.5658982166159199,"dependent_repos_count":0.0,"dependent_packages_count":1.8268812527185732,"stargazers_count":2.566333188342758,"forks_count":1.2614180078294912,"docker_downloads_count":null,"average":1.4441061331013485},"purl":"pkg:bioconductor/GEOquery","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/GEOquery","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/GEOquery","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/GEOquery/dependencies","status":null,"funding_links":[],"critical":false,"issue_metadata":{"last_synced_at":"2025-08-29T05:33:44.632Z","issues_count":83,"pull_requests_count":24,"avg_time_to_close_issue":33641765.985074624,"avg_time_to_close_pull_request":22375553.13043478,"issues_closed_count":67,"pull_requests_closed_count":23,"pull_request_authors_count":14,"issue_authors_count":58,"avg_comments_per_issue":2.0843373493975905,"avg_comments_per_pull_request":1.1666666666666667,"merged_pull_requests_count":17,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":1.6666666666666667,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2Fgeoquery/issues","maintainers":[{"login":"seandavi","count":21,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/seandavi"}],"active_maintainers":[{"login":"seandavi","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/seandavi"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GEOquery/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GEOquery/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GEOquery/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GEOquery/related_packages","maintainers":[{"uuid":"seandavi@gmail.com","login":null,"name":"Sean Davis","email":"seandavi@gmail.com","url":null,"packages_count":4,"html_url":null,"role":null,"created_at":"2023-10-31T02:06:02.708Z","updated_at":"2023-10-31T02:06:02.708Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/seandavi@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402629,"full_name":"seandavi/geoquery","default_branch":"main","committers":[{"name":"Sean Davis","email":"seandavi@gmail.com","login":"seandavi","count":463},{"name":"sdavis2@mail.nih.gov","email":"sdavis2@mail.nih.gov@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":204},{"name":"d.tenenbaum","email":"d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":32},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":"dtenenba","count":26},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":17},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":15},{"name":"hpages@fhcrc.org","email":"hpages@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":15},{"name":"p.aboyoun","email":"p.aboyoun@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":13},{"name":"Patrick Aboyoun","email":"unknown","login":null,"count":13},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":8},{"name":"Alexey Sergushichev","email":"alsergbox@gmail.com","login":"assaron","count":6},{"name":"Vladislav Kamenev","email":"mazahakaforever@ya.ru","login":"vlakam","count":4},{"name":"Bioconductor Git-SVN Bridge","email":"bioc-sync@bioconductor.org","login":null,"count":3},{"name":"lshep","email":"lori.shepherd@roswellpark.org","login":"lshep","count":3},{"name":"Keith Hughitt","email":"keith.hughitt@gmail.com","login":"khughitt","count":3},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"sethf","email":"sethf@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":2},{"name":"m.carlson","email":"m.carlson@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":2},{"name":"Seth Falcon","email":"sfalcon@fhcrc.org","login":null,"count":2},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":2},{"name":"Leonardo Gama","email":"leonardo.reis.gama@gmail.com","login":"leogama","count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"dereckdemezquita","email":"dereck@demezquita.com","login":"dereckdemezquita","count":2},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":"LiNk-NY","count":1},{"name":"Giovanni Dall'Olio","email":"dalloliogm@gmail.com","login":"dalloliogm","count":1},{"name":"v.obenchain","email":"v.obenchain@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1},{"name":"c.wong","email":"c.wong@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1},{"name":"Valerie Obenchain","email":"vobencha@fhcrc.org","login":null,"count":1},{"name":"Marc Carlson","email":"mcarlson@fhcrc.org","login":null,"count":1},{"name":"Chao-Jen Wong","email":"cwon2@fhcrc.org","login":null,"count":1},{"name":"Ramiro Magno","email":"ramiro.magno.git@gmail.com","login":"ramiromagno","count":1},{"name":"Russell Hyde","email":"russ.hyde.data@gmail.com","login":"russHyde","count":1},{"name":"YITA","email":"mitma07@gmail.com","login":"yitaverse","count":1},{"name":"yun","email":"yunyunpp96@outlook.com","login":"Yunuuuu","count":1},{"name":"kalugny","email":"kalugny@gmail.com","login":"kalugny","count":1},{"name":"Yihui Xie","email":"xie@yihui.name","login":"yihui","count":1}],"total_commits":854,"total_committers":36,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":23.72222222222222,"dds":0.4578454332552693,"past_year_committers":[{"name":"Sean Davis","email":"seandavi@gmail.com","login":"seandavi","count":38}],"past_year_total_commits":38,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":38.0,"past_year_dds":0.0,"last_synced_at":"2025-05-20T13:43:19.185Z","last_synced_commit":"eeb0df241f3865f011d6e1883e5c7fd2495d17e2","created_at":"2023-10-25T00:18:44.032Z","updated_at":"2025-05-20T13:43:25.522Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2Fgeoquery/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.276Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"seandavi/geoquery","html_url":"https://github.com/seandavi/geoquery","last_synced_at":"2025-08-29T05:33:44.632Z","status":"error","issues_count":83,"pull_requests_count":24,"avg_time_to_close_issue":33641765.985074624,"avg_time_to_close_pull_request":22375553.13043478,"issues_closed_count":67,"pull_requests_closed_count":23,"pull_request_authors_count":14,"issue_authors_count":58,"avg_comments_per_issue":2.0843373493975905,"avg_comments_per_pull_request":1.1666666666666667,"merged_pull_requests_count":17,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":1.6666666666666667,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-10-25T00:18:56.446Z","updated_at":"2025-09-02T17:10:09.840Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2Fgeoquery","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2Fgeoquery/issues","issue_labels_count":{"bug":8,"enhancement":6,"wontfix":2,"question":2,"support":2,"tests":1,"Possible NCBI issue":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":57,"OWNER":16,"CONTRIBUTOR":12},"pull_request_author_associations_count":{"CONTRIBUTOR":13,"NONE":7,"OWNER":5},"issue_authors":{"seandavi":16,"khughitt":3,"assaron":3,"DarioS":3,"kalugny":3,"zkyriaki":3,"ghost":2,"aeolianine":1,"1298894527":1,"davidechicco":1,"Guossin":1,"atakanekiz":1,"dereckmezquita":1,"blancahimes":1,"sionaris":1,"vlakam":1,"FarzanT":1,"chenx9":1,"BJWiley233":1,"dfantini82":1,"todaroroad":1,"Famguy":1,"swiftiebirth13":1,"hammer":1,"BolinZheng80":1,"jlevy44":1,"AzlanNI":1,"ce-r":1,"ShixiangWang":1,"rjpbonnal":1,"ezgicn":1,"fouslim":1,"bjmt":1,"ibilgen":1,"pfgherardini":1,"TSI-PTG":1,"Rohit-Satyam":1,"thyagoleal":1,"iago-pssjd":1,"Faezeh0":1,"ning-y":1,"rominaappierdo":1,"leogama":1,"SammBS":1,"moaraj":1,"wymin576":1,"garciaaxnih":1,"suburbianmantia":1,"JanLanzer":1,"bastienchassagnol":1,"powestermark":1,"wobenshain":1,"lunakhayat":1,"VasLem":1,"MohaRamadan":1,"woolf-wu":1,"zhangj5":1,"nilanjana1996":1,"zh-zhang1984":1},"pull_request_authors":{"seandavi":5,"assaron":4,"vlakam":2,"dereckmezquita":2,"khughitt":2,"ChemBioScripting":2,"kalugny":1,"grimbough":1,"russHyde":1,"yihui":1,"martinguerrero89":1,"Yunuuuu":1,"frlender":1,"MichaelChirico":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164087,"issues_count":31988492,"pull_requests_count":100218704,"authors_count":10728235,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":1,"support":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":2,"OWNER":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"Rohit-Satyam":1,"seandavi":1,"wymin576":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"seandavi","count":21,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/seandavi"}],"active_maintainers":[{"login":"seandavi","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/seandavi"}]},"events":{"total":{"IssuesEvent":7,"WatchEvent":10,"DeleteEvent":1,"IssueCommentEvent":10,"PushEvent":15,"CreateEvent":2},"last_year":{"IssuesEvent":7,"WatchEvent":10,"DeleteEvent":1,"IssueCommentEvent":10,"PushEvent":15,"CreateEvent":2}},"keywords":["bioconductor","bioinformatics","data-science","genomics","ncbi-geo","r","rstats"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-07-24T21:02:16.990Z","updated_at":"2022-07-24T21:02:16.990Z","repository_link":"https://github.com/seandavi/GEOquery/blob/devel/DESCRIPTION","dependencies":[{"id":379711783,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":379711784,"package_name":"Biobase","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":379711785,"package_name":"readr","ecosystem":"cran","requirements":"\u003e= 1.3.1","direct":true,"kind":"imports","optional":false},{"id":379711786,"package_name":"xml2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711787,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711788,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711789,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711790,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711791,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711792,"package_name":"curl","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711793,"package_name":"rentrez","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711794,"package_name":"R.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":379711795,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":379711796,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":379711797,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":379711798,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":379711799,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":379711800,"package_name":"markdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":22.97112348497047,"created_at":"2025-09-08T10:46:40.016Z","updated_at":"2025-10-07T08:24:11.867Z","avatar_url":"https://github.com/seandavi.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-packages","mass-spectrometry","metabolomics","gene","proteomics","peak-detection","feature-detection","hdf5","looking-for-maintainer","rhdf5"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61805","html_url":"https://science.ecosyste.ms/projects/61805","bibtex_url":"https://science.ecosyste.ms/projects/61805/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/61805/export.apalike"}