{"id":61814,"name":"signeR","description":null,"url":"https://github.com/tojallab/signer","last_synced_at":"2025-09-08T12:33:44.369Z","repository":{"id":39636718,"uuid":"61140662","full_name":"TojalLab/signeR","owner":"TojalLab","description":null,"archived":false,"fork":false,"pushed_at":"2024-04-15T18:29:04.000Z","size":8237,"stargazers_count":14,"open_issues_count":0,"forks_count":3,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2025-08-31T12:59:56.081Z","etag":null,"topics":["bioconductor","bioinformatics"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/signeR","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/TojalLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2016-06-14T17:01:07.000Z","updated_at":"2025-07-06T12:23:11.000Z","dependencies_parsed_at":"2023-10-12T21:18:40.683Z","dependency_job_id":"a3717074-7172-4843-93dc-cff6e681f8a7","html_url":"https://github.com/TojalLab/signeR","commit_stats":{"total_commits":116,"total_committers":13,"mean_commits":8.923076923076923,"dds":0.6551724137931034,"last_synced_commit":"d7657acb24d785873ac863350282f8c515ebcd24"},"previous_names":["tojallab/signer","rvalieris/signer"],"tags_count":10,"template":false,"template_full_name":null,"purl":"pkg:github/TojalLab/signeR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TojalLab","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174106,"owners_count":25235202,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"TojalLab","name":"TojalLab","uuid":"145458804","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/145458804?v=4","repositories_count":1,"last_synced_at":"2023-09-25T23:46:27.581Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/TojalLab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-09-25T23:46:27.593Z","updated_at":"2023-09-25T23:46:27.593Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TojalLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TojalLab/repositories"},"packages":[{"id":8420709,"name":"signeR","ecosystem":"bioconductor","description":"Empirical Bayesian approach to mutational signature discovery","homepage":"https://github.com/TojalLab/signeR ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/TojalLab/signeR","keywords_array":["GenomicVariation","Software","SomaticMutation","StatisticalMethod","Visualization"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T15:00:40.682Z","latest_release_published_at":"2025-05-15T07:22:05.055Z","latest_release_number":"2.10.0","last_synced_at":"2025-08-12T03:51:40.147Z","created_at":"2023-10-12T15:00:40.078Z","updated_at":"2025-08-12T03:51:40.147Z","registry_url":"https://bioconductor.org/packages/signeR","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/signeR/inst/doc/signeR.pdf","metadata":{},"repo_metadata":{"id":39636718,"uuid":"61140662","full_name":"TojalLab/signeR","owner":"TojalLab","description":null,"archived":false,"fork":false,"pushed_at":"2024-04-15T18:29:04.000Z","size":8237,"stargazers_count":13,"open_issues_count":0,"forks_count":3,"subscribers_count":3,"default_branch":"devel","last_synced_at":"2024-08-16T14:09:47.611Z","etag":null,"topics":["bioconductor","bioinformatics"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/signeR","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/TojalLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2016-06-14T17:01:07.000Z","updated_at":"2024-02-07T13:59:41.000Z","dependencies_parsed_at":"2023-10-12T21:18:40.683Z","dependency_job_id":"a3717074-7172-4843-93dc-cff6e681f8a7","html_url":"https://github.com/TojalLab/signeR","commit_stats":{"total_commits":116,"total_committers":13,"mean_commits":8.923076923076923,"dds":0.6551724137931034,"last_synced_commit":"d7657acb24d785873ac863350282f8c515ebcd24"},"previous_names":["tojallab/signer","rvalieris/signer"],"tags_count":10,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TojalLab","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":219498125,"owners_count":16497460,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"TojalLab","name":"TojalLab","uuid":"145458804","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/145458804?v=4","repositories_count":1,"last_synced_at":"2023-09-25T23:46:27.581Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/TojalLab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-09-25T23:46:27.593Z","updated_at":"2023-09-25T23:46:27.593Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TojalLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TojalLab/repositories"},"tags":[{"name":"v0.99.11","sha":"7d8910547eb3c80cfdb840aa67fd70fca1717f53","kind":"commit","published_at":"2016-08-13T00:17:08.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.11","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.11","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.11/manifests"},{"name":"v0.99.9","sha":"e7f0f320350b779a376afd6b1b6f139dec2b6c8d","kind":"commit","published_at":"2016-06-29T18:14:09.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.9","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.9","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.9/manifests"},{"name":"v0.99.8","sha":"a18aa0b7623ba4bb3370bc59c10af636a298bbbd","kind":"commit","published_at":"2016-06-24T14:48:27.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.8","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.8","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.8/manifests"},{"name":"v0.99.7","sha":"feeb51133aab3852eb40d10ce466ae2ebd496631","kind":"commit","published_at":"2016-06-22T19:36:33.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.7","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.7","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.7/manifests"},{"name":"v0.99.6","sha":"43357d9418788b7b7b2d61a744841cf39b1e36c7","kind":"commit","published_at":"2016-06-22T13:48:33.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.6","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.6","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.6/manifests"},{"name":"v0.99.5","sha":"6d399c2ffceffc399d810cefe78a6791acc77a53","kind":"commit","published_at":"2016-06-21T20:51:20.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.5","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.5","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.5/manifests"},{"name":"v0.99.4","sha":"67275f7b5c979b67e16ba52c3a845e18466ee413","kind":"commit","published_at":"2016-06-20T16:48:46.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.4","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.4","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.4/manifests"},{"name":"v0.99.3","sha":"4acb78b02a0d2a05b6cff099678e01573675cfea","kind":"commit","published_at":"2016-06-20T15:21:35.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.3","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.3/manifests"},{"name":"v0.99.1","sha":"109b37c810569cd3a9295feec173a3291a6dc624","kind":"commit","published_at":"2016-06-17T14:20:40.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.99.1","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.99.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.99.1/manifests"},{"name":"v0.5.0","sha":"f5d8a02e588bf6d77dc155d0cdb99173c4355d82","kind":"commit","published_at":"2016-06-15T21:02:20.000Z","download_url":"https://codeload.github.com/TojalLab/signeR/tar.gz/v0.5.0","html_url":"https://github.com/TojalLab/signeR/releases/tag/v0.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/tags/v0.5.0/manifests"}]},"repo_metadata_updated_at":"2024-09-16T14:41:29.506Z","dependent_packages_count":0,"downloads":19165,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":45.38116591928251,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":9.125475285171103,"forks_count":5.084745762711865,"docker_downloads_count":null,"average":11.918277393433096},"purl":"pkg:bioconductor/signeR","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/signeR","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/signeR","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/signeR/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/signeR/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/signeR/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/signeR/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/signeR/related_packages","maintainers":[{"uuid":"renan.valieris@accamargo.org.br","login":null,"name":"Renan Valieris","email":"renan.valieris@accamargo.org.br","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-20T13:13:10.293Z","updated_at":"2023-11-20T13:13:10.293Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/renan.valieris@accamargo.org.br/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403642,"full_name":"TojalLab/signeR","default_branch":"devel","committers":[{"name":"Alexandre Defelicibus","email":"adefelicibus@gmail.com","login":null,"count":40},{"name":"Renan Valieris","email":"renan.valieris@accamargo.org.br","login":null,"count":24},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":14},{"name":"Renan Valieris","email":"renan.valieris@cipe.accamargo.org.br","login":null,"count":14},{"name":"rodrigo","email":"rddrummond@gmail.com","login":null,"count":6},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":4},{"name":"rvalieris","email":"rvalieris","login":"rvalieris","count":3},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1}],"total_commits":116,"total_committers":13,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":8.923076923076923,"dds":0.6551724137931034,"past_year_committers":[{"name":"Alexandre Defelicibus","email":"adefelicibus@gmail.com","login":null,"count":18},{"name":"Renan Valieris","email":"renan.valieris@accamargo.org.br","login":null,"count":9},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"rodrigo","email":"rddrummond@gmail.com","login":null,"count":2},{"name":"rvalieris","email":"rvalieris","login":"rvalieris","count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2}],"past_year_total_commits":35,"past_year_total_committers":6,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":5.833333333333333,"past_year_dds":0.48571428571428577,"last_synced_at":"2023-10-25T22:16:24.720Z","last_synced_commit":"d7657acb24d785873ac863350282f8c515ebcd24","created_at":"2023-10-25T13:16:53.070Z","updated_at":"2023-10-25T22:16:24.720Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-21T00:00:20.603Z","repositories_count":5479765,"commits_count":853307492,"contributors_count":31095130,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"TojalLab/signeR","html_url":"https://github.com/TojalLab/signeR","last_synced_at":"2025-04-25T00:21:23.099Z","status":null,"issues_count":23,"pull_requests_count":11,"avg_time_to_close_issue":21381777.608695652,"avg_time_to_close_pull_request":314373.36363636365,"issues_closed_count":23,"pull_requests_closed_count":11,"pull_request_authors_count":3,"issue_authors_count":16,"avg_comments_per_issue":3.608695652173913,"avg_comments_per_pull_request":0.09090909090909091,"merged_pull_requests_count":11,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-22T00:18:32.137Z","updated_at":"2025-04-25T00:21:23.099Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/TojalLab%2FsigneR/issues","issue_labels_count":{"bug":3,"question":3},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":23},"pull_request_author_associations_count":{"CONTRIBUTOR":9,"COLLABORATOR":2},"issue_authors":{"tobsecret":5,"craigdj91":2,"xiw588":2,"Rashesh7":2,"TMante":1,"tamaraprieto":1,"hermidalc":1,"ulah":1,"wir963":1,"khuhu":1,"xizhihui":1,"lbeltrame":1,"itsvenu":1,"blsfoxfox":1,"NikdAK":1,"nurmians":1},"pull_request_authors":{"adefelicibus":6,"rdrummond":3,"rvalieris":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-28T00:00:20.451Z","repositories_count":8341616,"issues_count":15640449,"pull_requests_count":37241097,"authors_count":5664792,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"rvalieris","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/rvalieris"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["bioconductor","bioinformatics"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-20T06:51:51.027Z","updated_at":"2022-09-20T06:51:51.027Z","repository_link":"https://github.com/TojalLab/signeR/blob/devel/DESCRIPTION","dependencies":[{"id":5605955470,"package_name":"VariantAnnotation","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5605955471,"package_name":"NMF","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":5605955472,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955473,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955474,"package_name":"class","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955475,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955476,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955477,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955478,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955479,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955480,"package_name":"nloptr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955481,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955482,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955483,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955484,"package_name":"PMCMRplus","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5605955485,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5605955486,"package_name":"rtracklayer","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":5605955487,"package_name":"BSgenome.Hsapiens.UCSC.hg19","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":15.064899841980502,"created_at":"2025-09-08T10:46:40.030Z","updated_at":"2025-10-07T08:24:12.019Z","avatar_url":"https://github.com/TojalLab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["http://doi.org/10.1093/bioinformatics/btw572"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","genomics","gene","statistical-analysis","genomics-visualization","u24ca289073","mutations","data-structure","copynumber","recount"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61814","html_url":"https://science.ecosyste.ms/projects/61814"}