{"id":61883,"name":"BiocSingular","description":"Clone of the Bioconductor repository for the BiocSingular package.","url":"https://github.com/ltla/biocsingular","last_synced_at":"2025-09-08T12:34:15.908Z","repository":{"id":82716719,"uuid":"153788078","full_name":"LTLA/BiocSingular","owner":"LTLA","description":"Clone of the Bioconductor repository for the BiocSingular package.","archived":false,"fork":false,"pushed_at":"2024-09-21T07:52:52.000Z","size":264,"stargazers_count":8,"open_issues_count":5,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-18T23:27:48.515Z","etag":null,"topics":["bioconductor-package","human-cell-atlas","singular-value-decomposition"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/devel/bioc/html/BiocSingular.html","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/LTLA.png","metadata":{"files":{"readme":null,"changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-10-19T13:36:04.000Z","updated_at":"2025-04-19T22:46:22.000Z","dependencies_parsed_at":null,"dependency_job_id":"7a7c7dfb-24e1-4938-bbf0-985d42cec0ee","html_url":"https://github.com/LTLA/BiocSingular","commit_stats":{"total_commits":262,"total_committers":6,"mean_commits":"43.666666666666664","dds":"0.36259541984732824","last_synced_commit":"90e33acdae02ffff05a9c20724cfc3a61be7843c"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/LTLA/BiocSingular","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA","download_url":"https://codeload.github.com/LTLA/BiocSingular/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174267,"owners_count":25235203,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"LTLA","name":"Aaron Lun","uuid":"8166669","kind":"user","description":"It/Its\r\n\r\n(ノಠ益ಠ)ノ彡┻━┻\r\n","email":"","website":null,"location":"San Francisco","twitter":"realAaronLun","company":"@Genentech","icon_url":"https://avatars.githubusercontent.com/u/8166669?u=010a3beba855cf3ba298ef96e6f5cfc105abd274\u0026v=4","repositories_count":183,"last_synced_at":"2024-03-17T14:53:55.047Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/LTLA","funding_links":[],"total_stars":544,"followers":null,"following":null,"created_at":"2022-11-08T22:45:01.463Z","updated_at":"2024-03-17T14:54:04.766Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA/repositories"},"packages":[{"id":8418856,"name":"BiocSingular","ecosystem":"bioconductor","description":"Singular Value Decomposition for Bioconductor Packages","homepage":"https://github.com/LTLA/BiocSingular ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/LTLA/BiocSingular","keywords_array":["DimensionReduction","PrincipalComponent","Software"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:21:22.568Z","latest_release_published_at":"2025-05-10T17:31:37.555Z","latest_release_number":"1.24.0","last_synced_at":"2025-08-18T23:20:27.371Z","created_at":"2023-10-12T14:21:22.458Z","updated_at":"2025-08-18T23:48:00.030Z","registry_url":"https://bioconductor.org/packages/BiocSingular","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/BiocSingular/inst/doc/BiocSingular.pdf","metadata":{},"repo_metadata":{"id":82716719,"uuid":"153788078","full_name":"LTLA/BiocSingular","owner":"LTLA","description":"Clone of the Bioconductor repository for the BiocSingular package.","archived":false,"fork":false,"pushed_at":"2024-09-21T07:52:52.000Z","size":264,"stargazers_count":8,"open_issues_count":5,"forks_count":3,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-07-12T11:04:13.153Z","etag":null,"topics":["bioconductor-package","human-cell-atlas","singular-value-decomposition"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/devel/bioc/html/BiocSingular.html","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/LTLA.png","metadata":{"files":{"readme":null,"changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-10-19T13:36:04.000Z","updated_at":"2025-04-19T22:46:22.000Z","dependencies_parsed_at":null,"dependency_job_id":"7a7c7dfb-24e1-4938-bbf0-985d42cec0ee","html_url":"https://github.com/LTLA/BiocSingular","commit_stats":{"total_commits":262,"total_committers":6,"mean_commits":"43.666666666666664","dds":"0.36259541984732824","last_synced_commit":"90e33acdae02ffff05a9c20724cfc3a61be7843c"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/LTLA/BiocSingular","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA","download_url":"https://codeload.github.com/LTLA/BiocSingular/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271073408,"owners_count":24694542,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-18T02:00:08.743Z","response_time":89,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"LTLA","name":"Aaron Lun","uuid":"8166669","kind":"user","description":"It/Its\r\n\r\n(ノಠ益ಠ)ノ彡┻━┻\r\n","email":"","website":null,"location":"San Francisco","twitter":"realAaronLun","company":"@Genentech","icon_url":"https://avatars.githubusercontent.com/u/8166669?u=010a3beba855cf3ba298ef96e6f5cfc105abd274\u0026v=4","repositories_count":183,"last_synced_at":"2024-03-17T14:53:55.047Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/LTLA","funding_links":[],"total_stars":544,"followers":null,"following":null,"created_at":"2022-11-08T22:45:01.463Z","updated_at":"2024-03-17T14:54:04.766Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LTLA/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-18T23:48:00.029Z","dependent_packages_count":28,"downloads":1026853,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":3.3057851239669422,"dependent_repos_count":0.0,"dependent_packages_count":2.609830361026533,"stargazers_count":18.051326663766858,"forks_count":22.48803827751196,"docker_downloads_count":null,"average":9.29099608525446},"purl":"pkg:bioconductor/BiocSingular","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/BiocSingular","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/BiocSingular","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/BiocSingular/dependencies","status":null,"funding_links":[],"critical":false,"issue_metadata":{"last_synced_at":"2025-07-12T21:59:33.133Z","issues_count":13,"pull_requests_count":4,"avg_time_to_close_issue":1532713.888888889,"avg_time_to_close_pull_request":97161.33333333333,"issues_closed_count":9,"pull_requests_closed_count":3,"pull_request_authors_count":2,"issue_authors_count":12,"avg_comments_per_issue":2.6923076923076925,"avg_comments_per_pull_request":1.25,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/issues","maintainers":[{"login":"LTLA","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/LTLA"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BiocSingular/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BiocSingular/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BiocSingular/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BiocSingular/related_packages","maintainers":[{"uuid":"infinite.monkeys.with.keyboards@gmail.com","login":null,"name":"Aaron Lun","email":"infinite.monkeys.with.keyboards@gmail.com","url":null,"packages_count":47,"html_url":null,"role":null,"created_at":"2023-11-25T13:22:17.280Z","updated_at":"2023-11-25T13:22:17.280Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/infinite.monkeys.with.keyboards@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1402760,"full_name":"LTLA/BiocSingular","default_branch":"master","committers":[{"name":"Aaron Lun","email":"aaron.lun@cruk.cam.ac.uk","login":null,"count":167},{"name":"LTLA","email":"infinite.monkeys.with.keyboards@gmail.com","login":"LTLA","count":73},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"Aaron Lun","email":"alun@wehi.edu.au","login":null,"count":10},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":8}],"total_commits":272,"total_committers":5,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":54.4,"dds":0.38602941176470584,"past_year_committers":[{"name":"LTLA","email":"infinite.monkeys.with.keyboards@gmail.com","login":"LTLA","count":6},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2}],"past_year_total_commits":8,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":4.0,"past_year_dds":0.25,"last_synced_at":"2025-01-10T00:50:09.222Z","last_synced_commit":"1bbcc83e39463946fc6ee4afe8706e4e417cc194","created_at":"2023-10-25T13:02:56.095Z","updated_at":"2025-01-10T00:50:09.223Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"LTLA/BiocSingular","html_url":"https://github.com/LTLA/BiocSingular","last_synced_at":"2025-08-18T23:21:28.657Z","status":"error","issues_count":13,"pull_requests_count":4,"avg_time_to_close_issue":1532713.888888889,"avg_time_to_close_pull_request":97161.33333333333,"issues_closed_count":9,"pull_requests_closed_count":3,"pull_request_authors_count":2,"issue_authors_count":12,"avg_comments_per_issue":2.6923076923076925,"avg_comments_per_pull_request":1.25,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-04-09T12:33:56.801Z","updated_at":"2025-09-01T15:45:55.829Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/LTLA%2FBiocSingular/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":10,"OWNER":2},"pull_request_author_associations_count":{"OWNER":4,"NONE":1},"issue_authors":{"LTLA":2,"brgew":1,"robertamezquita":1,"DarioS":1,"drisso":1,"lwaldron":1,"wenbostar":1,"davisidarta":1,"pablo-rodr-bio2":1,"mkarikom":1,"xiangpin":1},"pull_request_authors":{"LTLA":4,"jonathangriffiths":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164853,"issues_count":31989996,"pull_requests_count":100212161,"authors_count":10728603,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"LTLA","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/LTLA"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"ForkEvent":3},"last_year":{"WatchEvent":1,"ForkEvent":3}},"keywords":["bioconductor-package","human-cell-atlas","singular-value-decomposition"],"dependencies":[],"score":18.01642485444461,"created_at":"2025-09-08T10:46:55.282Z","updated_at":"2025-10-07T08:24:13.394Z","avatar_url":"https://github.com/LTLA.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["core-package","dimension-reduction","feature-extraction","gene-expression","shiny","single-cell","transcriptomics","matrix-library","gene","grna-sequence"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61883","html_url":"https://science.ecosyste.ms/projects/61883"}