{"id":61904,"name":"orthogene","description":"🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨   🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️","url":"https://github.com/neurogenomics/orthogene","last_synced_at":"2025-09-08T12:34:24.495Z","repository":{"id":49782345,"uuid":"390130503","full_name":"neurogenomics/orthogene","owner":"neurogenomics","description":"🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨   🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️","archived":false,"fork":false,"pushed_at":"2025-03-09T17:57:03.000Z","size":8334,"stargazers_count":44,"open_issues_count":12,"forks_count":4,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-08-12T01:47:32.508Z","etag":null,"topics":["animal-models","bioconductor","bioconductor-package","bioinformatics","biomedicine","comparative-genomics","evolutionary-biology","genes","genomics","ontologies","r","r-package","translational-research"],"latest_commit_sha":null,"homepage":"https://doi.org/doi:10.18129/B9.bioc.orthogene","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/neurogenomics.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-07-27T21:22:48.000Z","updated_at":"2025-07-08T16:36:34.000Z","dependencies_parsed_at":"2023-01-22T20:00:44.896Z","dependency_job_id":"ac88bd04-c317-4737-8469-2b44a5423d9a","html_url":"https://github.com/neurogenomics/orthogene","commit_stats":{"total_commits":265,"total_committers":5,"mean_commits":53.0,"dds":"0.13962264150943393","last_synced_commit":"c57a55abab9696794be1d5359c630acaf3e31871"},"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/neurogenomics/orthogene","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurogenomics","download_url":"https://codeload.github.com/neurogenomics/orthogene/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174268,"owners_count":25235203,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"neurogenomics","name":"neurogenomics","uuid":"48588661","kind":"organization","description":"Neurogenomics Lab, UK Dementia Research Institute at Imperial College London ","email":null,"website":"https://www.neurogenomics.co.uk","location":"United Kingdom","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/48588661?v=4","repositories_count":56,"last_synced_at":"2023-05-26T20:30:34.149Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/neurogenomics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-21T01:22:40.882Z","updated_at":"2023-05-26T20:30:34.166Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurogenomics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurogenomics/repositories"},"packages":[{"id":8420238,"name":"orthogene","ecosystem":"bioconductor","description":"Interspecies gene mapping","homepage":"https://github.com/neurogenomics/orthogene ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/neurogenomics/orthogene","keywords_array":["ComparativeGenomics","GeneExpression","Genetics","Phylogenetics","Preprocessing","Software","Transcriptomics"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:50:29.193Z","latest_release_published_at":"2025-05-04T05:34:25.342Z","latest_release_number":"1.14.0","last_synced_at":"2025-08-11T17:56:16.891Z","created_at":"2023-10-12T14:50:29.054Z","updated_at":"2025-08-12T12:11:36.495Z","registry_url":"https://bioconductor.org/packages/orthogene","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/orthogene/inst/doc/orthogene.pdf","metadata":{},"repo_metadata":{"id":49782345,"uuid":"390130503","full_name":"neurogenomics/orthogene","owner":"neurogenomics","description":"🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨   🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️","archived":false,"fork":false,"pushed_at":"2025-03-09T17:57:03.000Z","size":8334,"stargazers_count":44,"open_issues_count":12,"forks_count":4,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-08-12T01:47:32.508Z","etag":null,"topics":["animal-models","bioconductor","bioconductor-package","bioinformatics","biomedicine","comparative-genomics","evolutionary-biology","genes","genomics","ontologies","r","r-package","translational-research"],"latest_commit_sha":null,"homepage":"https://doi.org/doi:10.18129/B9.bioc.orthogene","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/neurogenomics.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-07-27T21:22:48.000Z","updated_at":"2025-07-08T16:36:34.000Z","dependencies_parsed_at":"2023-01-22T20:00:44.896Z","dependency_job_id":"ac88bd04-c317-4737-8469-2b44a5423d9a","html_url":"https://github.com/neurogenomics/orthogene","commit_stats":{"total_commits":265,"total_committers":5,"mean_commits":53.0,"dds":"0.13962264150943393","last_synced_commit":"c57a55abab9696794be1d5359c630acaf3e31871"},"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/neurogenomics/orthogene","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurogenomics","download_url":"https://codeload.github.com/neurogenomics/orthogene/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270058651,"owners_count":24519749,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-12T02:00:09.011Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"neurogenomics","name":"neurogenomics","uuid":"48588661","kind":"organization","description":"Neurogenomics Lab, UK Dementia Research Institute at Imperial College London ","email":null,"website":"https://www.neurogenomics.co.uk","location":"United Kingdom","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/48588661?v=4","repositories_count":56,"last_synced_at":"2023-05-26T20:30:34.149Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/neurogenomics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-21T01:22:40.882Z","updated_at":"2023-05-26T20:30:34.166Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurogenomics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurogenomics/repositories"},"tags":[{"name":"v1.1.1","sha":"ca711c875e3e5c5c0e3e381ff3c69d6dc3fe9f69","kind":"commit","published_at":"2021-10-27T19:03:44.000Z","download_url":"https://codeload.github.com/neurogenomics/orthogene/tar.gz/v1.1.1","html_url":"https://github.com/neurogenomics/orthogene/releases/tag/v1.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/neurogenomics/orthogene@v1.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags/v1.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags/v1.1.1/manifests"},{"name":"v1.0.0","sha":"c345a8b7d38a6b705d84e5779f5c4e89cfa14b84","kind":"commit","published_at":"2021-10-27T16:46:03.000Z","download_url":"https://codeload.github.com/neurogenomics/orthogene/tar.gz/v1.0.0","html_url":"https://github.com/neurogenomics/orthogene/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/neurogenomics/orthogene@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags/v1.0.0/manifests"},{"name":"latest","sha":"c9fc404cab0848f00db34aae24ddfe60df99b772","kind":"commit","published_at":"2021-10-16T05:48:14.000Z","download_url":"https://codeload.github.com/neurogenomics/orthogene/tar.gz/latest","html_url":"https://github.com/neurogenomics/orthogene/releases/tag/latest","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/neurogenomics/orthogene@latest","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags/latest","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/tags/latest/manifests"}]},"repo_metadata_updated_at":"2025-08-12T12:11:36.495Z","dependent_packages_count":1,"downloads":20880,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":66.57458563535911,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":22.191528545119706},"purl":"pkg:bioconductor/orthogene","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/orthogene","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/orthogene","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/orthogene/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-06T15:53:23.851Z","issues_count":65,"pull_requests_count":2,"avg_time_to_close_issue":4298513.260869565,"avg_time_to_close_pull_request":2386338.0,"issues_closed_count":46,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":13,"avg_comments_per_issue":1.5384615384615385,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":799204.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":2.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/issues","maintainers":[{"login":"bschilder","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bschilder"}],"active_maintainers":[{"login":"bschilder","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bschilder"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/orthogene/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/orthogene/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/orthogene/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/orthogene/related_packages","maintainers":[{"uuid":"brian_schilder@alumni.brown.edu","login":null,"name":"Brian Schilder","email":"brian_schilder@alumni.brown.edu","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-27T20:07:21.931Z","updated_at":"2023-11-27T20:07:21.931Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/brian_schilder@alumni.brown.edu/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403194,"full_name":"neurogenomics/orthogene","default_branch":"main","committers":[{"name":"bschilder","email":"brian_schilder@alumni.brown.edu","login":null,"count":228},{"name":"Brian M. Schilder","email":"34280215+bschilder","login":"bschilder","count":29},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":4},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2}],"total_commits":265,"total_committers":5,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":53.0,"dds":0.13962264150943393,"past_year_committers":[{"name":"bschilder","email":"brian_schilder@alumni.brown.edu","login":null,"count":39},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2}],"past_year_total_commits":43,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":14.333333333333334,"past_year_dds":0.09302325581395354,"last_synced_at":"2023-10-25T13:15:58.796Z","last_synced_commit":"c57a55abab9696794be1d5359c630acaf3e31871","created_at":"2023-10-25T13:15:50.663Z","updated_at":"2023-10-25T13:15:58.797Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-25T00:00:24.730Z","repositories_count":5479765,"commits_count":853308191,"contributors_count":31095157,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"neurogenomics/orthogene","html_url":"https://github.com/neurogenomics/orthogene","last_synced_at":"2025-08-13T05:55:39.170Z","status":"error","issues_count":65,"pull_requests_count":2,"avg_time_to_close_issue":4298513.260869565,"avg_time_to_close_pull_request":2386338.0,"issues_closed_count":46,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":13,"avg_comments_per_issue":1.5384615384615385,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":799204.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":2.5,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-01-31T11:20:03.773Z","updated_at":"2025-09-01T09:32:46.772Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2Forthogene/issues","issue_labels_count":{"enhancement":21,"bug":16,"GitHub Actions":2,"documentation":1},"pull_request_labels_count":{},"issue_author_associations_count":{"COLLABORATOR":28,"NONE":12,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":2},"issue_authors":{"bschilder":28,"sagarutturkar":2,"igordot":1,"mkutmon":1,"Al-Murphy":1,"willgearty":1,"cjuigne":1,"shanie-landen":1,"forraving":1,"agata-sm":1,"quelobs":1,"ehickman0817":1,"mdsutcliffe":1},"pull_request_authors":{"Al-Murphy":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164853,"issues_count":31989996,"pull_requests_count":100212161,"authors_count":10728603,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":2,"bug":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":3,"COLLABORATOR":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"agata-sm":1,"bschilder":1,"cjuigne":1,"quelobs":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"bschilder","count":28,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bschilder"}],"active_maintainers":[{"login":"bschilder","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bschilder"}]},"events":{"total":{"IssuesEvent":5,"WatchEvent":3,"IssueCommentEvent":11,"PushEvent":4,"CreateEvent":2},"last_year":{"IssuesEvent":5,"WatchEvent":3,"IssueCommentEvent":11,"PushEvent":4,"CreateEvent":2}},"keywords":["animal-models","bioconductor","bioconductor-package","bioinformatics","biomedicine","comparative-genomics","evolutionary-biology","genes","genomics","ontologies","r","r-package","translational-research"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-03T00:12:25.590Z","updated_at":"2022-09-03T00:12:25.590Z","repository_link":"https://github.com/neurogenomics/orthogene/blob/main/DESCRIPTION","dependencies":[{"id":3642466710,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.1","direct":true,"kind":"depends","optional":false},{"id":3642466711,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466712,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466713,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466714,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466715,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466716,"package_name":"jsonlite","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466717,"package_name":"homologene","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466718,"package_name":"gprofiler2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466719,"package_name":"babelgene","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466720,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466721,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466722,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466723,"package_name":"ggpubr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466724,"package_name":"patchwork","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466725,"package_name":"DelayedArray","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466726,"package_name":"Matrix.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466727,"package_name":"grr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466728,"package_name":"repmis","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466729,"package_name":"ggtree","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466730,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3642466731,"package_name":"remotes","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466732,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466733,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466734,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466735,"package_name":"markdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466736,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466737,"package_name":"here","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466738,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false},{"id":3642466739,"package_name":"piggyback","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466740,"package_name":"badger","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466741,"package_name":"magick","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466742,"package_name":"desc","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466743,"package_name":"hrbrthemes","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466744,"package_name":"Cairo","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466745,"package_name":"yulab.utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466746,"package_name":"haven","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466747,"package_name":"GenomeInfoDbData","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466748,"package_name":"ape","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466749,"package_name":"phytools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466750,"package_name":"rphylopic","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466751,"package_name":"TreeTools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466752,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466753,"package_name":"ggimage","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":3642466754,"package_name":"OmaDB","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/rworkflows.yml","sha":null,"kind":"manifest","created_at":"2023-01-22T20:00:44.853Z","updated_at":"2023-01-22T20:00:44.853Z","repository_link":"https://github.com/neurogenomics/orthogene/blob/main/.github/workflows/rworkflows.yml","dependencies":[{"id":7101561027,"package_name":"neurogenomics/rworkflows","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false}]}],"score":15.581432426019305,"created_at":"2025-09-08T10:47:09.629Z","updated_at":"2025-10-07T08:24:13.808Z","avatar_url":"https://github.com/neurogenomics.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["grna-sequence","immune-repertoire","sequencing","biology","taxonomy","proteomics","statistical-analysis","data-access","microbiome-analysis","looking-for-maintainer"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61904","html_url":"https://science.ecosyste.ms/projects/61904"}