{"id":61909,"name":"cogeqc","description":"An R package to perform systematic quality checks on comparative genomics analyses","url":"https://github.com/almeidasilvaf/cogeqc","last_synced_at":"2025-09-08T12:34:28.989Z","repository":{"id":119284988,"uuid":"438402953","full_name":"almeidasilvaf/cogeqc","owner":"almeidasilvaf","description":"An R package to perform systematic quality checks on comparative genomics analyses","archived":false,"fork":false,"pushed_at":"2024-01-12T21:49:59.000Z","size":9915,"stargazers_count":8,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2024-05-09T12:48:52.393Z","etag":null,"topics":["comparative-genomics","evolutionary-genomics","rstats"],"latest_commit_sha":null,"homepage":"https://almeidasilvaf.github.io/cogeqc/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/almeidasilvaf.png","metadata":{},"created_at":"2021-12-14T21:18:39.000Z","updated_at":"2024-03-05T17:37:04.000Z","dependencies_parsed_at":null,"dependency_job_id":"8d07729e-6531-430a-b36b-6b1fbfbd2c4c","html_url":"https://github.com/almeidasilvaf/cogeqc","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/almeidasilvaf/cogeqc","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/almeidasilvaf","download_url":"https://codeload.github.com/almeidasilvaf/cogeqc/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174268,"owners_count":25235203,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"almeidasilvaf","name":"Fabrício Almeida-Silva","uuid":"61153286","kind":"user","description":"Bioinformatics. Network biology. Plant genomics and evolution. #rstats addict.","email":"","website":"https://almeidasilvaf.github.io","location":"Technologiepark 71, Ghent, Belgium","twitter":"almeidasilvaf","company":"VIB-UGent Center for Plant Systems Biology","icon_url":"https://avatars.githubusercontent.com/u/61153286?u=f03bbc3ba0ab7151353932197b6fd9d48c6a0b37\u0026v=4","repositories_count":7,"last_synced_at":"2023-03-06T21:42:59.599Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/almeidasilvaf","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T22:07:32.691Z","updated_at":"2023-03-06T21:42:59.614Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/almeidasilvaf","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/almeidasilvaf/repositories"},"packages":[{"id":8419072,"name":"cogeqc","ecosystem":"bioconductor","description":"Systematic quality checks on comparative genomics analyses","homepage":"https://github.com/almeidasilvaf/cogeqc ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/almeidasilvaf/cogeqc","keywords_array":["ComparativeGenomics","FunctionalGenomics","GenomeAssembly","Network","Phylogenetics","QualityControl","Software"],"namespace":null,"versions_count":6,"first_release_published_at":"2023-10-12T14:26:09.295Z","latest_release_published_at":"2025-05-12T23:20:51.024Z","latest_release_number":"1.12.0","last_synced_at":"2025-08-20T16:18:25.299Z","created_at":"2023-10-12T14:26:08.805Z","updated_at":"2025-08-20T16:18:25.299Z","registry_url":"https://bioconductor.org/packages/cogeqc","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/cogeqc/inst/doc/cogeqc.pdf","metadata":{},"repo_metadata":{"uuid":"438402953","full_name":"almeidasilvaf/cogeqc","owner":"almeidasilvaf","description":"An R package to perform systematic quality checks on comparative genomics analyses","archived":false,"fork":false,"pushed_at":"2023-10-07T18:20:47.000Z","size":9026,"stargazers_count":8,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2023-10-25T13:15:40.198Z","etag":null,"topics":["comparative-genomics","evolutionary-genomics","rstats"],"latest_commit_sha":null,"homepage":"https://almeidasilvaf.github.io/cogeqc/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/almeidasilvaf.png","metadata":{},"created_at":"2021-12-14T21:18:39.000Z","updated_at":"2023-09-30T01:35:33.000Z","dependencies_parsed_at":null,"dependency_job_id":"8d07729e-6531-430a-b36b-6b1fbfbd2c4c","html_url":"https://github.com/almeidasilvaf/cogeqc","commit_stats":null,"previous_names":[],"tags_count":0,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/almeidasilvaf","download_url":"https://codeload.github.com/almeidasilvaf/cogeqc/tar.gz/refs/heads/devel","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":172212498,"owners_count":9796768,"icon_url":"https://github.com/github.png","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"almeidasilvaf","name":"Fabrício Almeida-Silva","uuid":"61153286","kind":"user","description":"Bioinformatics. Network biology. Plant genomics and evolution. #rstats addict.","email":"","website":"https://almeidasilvaf.github.io","location":"Technologiepark 71, Ghent, Belgium","twitter":"almeidasilvaf","company":"VIB-UGent Center for Plant Systems Biology","icon_url":"https://avatars.githubusercontent.com/u/61153286?u=f03bbc3ba0ab7151353932197b6fd9d48c6a0b37\u0026v=4","repositories_count":7,"last_synced_at":"2023-03-06T21:42:59.599Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/almeidasilvaf","created_at":"2022-11-16T22:07:32.691Z","updated_at":"2023-03-06T21:42:59.614Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/almeidasilvaf","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/almeidasilvaf/repositories"},"tags":[]},"repo_metadata_updated_at":"2023-11-20T12:44:57.569Z","dependent_packages_count":0,"downloads":6841,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":89.4206549118388,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":29.80688497061293},"purl":"pkg:bioconductor/cogeqc","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/cogeqc","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/cogeqc","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/cogeqc/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cogeqc/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cogeqc/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cogeqc/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/cogeqc/related_packages","maintainers":[{"uuid":"fabricio_almeidasilva@hotmail.com","login":null,"name":"Fabrício Almeida-Silva","email":"fabricio_almeidasilva@hotmail.com","url":null,"packages_count":8,"html_url":null,"role":null,"created_at":"2023-11-20T12:48:06.140Z","updated_at":"2023-11-20T12:48:06.140Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/fabricio_almeidasilva@hotmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403143,"full_name":"almeidasilvaf/cogeqc","default_branch":"devel","committers":[{"name":"almeidasilvaf","email":"fabricio_almeidasilva@hotmail.com","login":null,"count":77},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2}],"total_commits":83,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":20.75,"dds":0.07228915662650603,"past_year_committers":[{"name":"almeidasilvaf","email":"fabricio_almeidasilva@hotmail.com","login":null,"count":7},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2}],"past_year_total_commits":11,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":3.6666666666666665,"past_year_dds":0.36363636363636365,"last_synced_at":"2023-10-25T13:15:42.954Z","last_synced_commit":"2b297238453f1a2bbfa0e5a83d23c51999ba5ca8","created_at":"2023-10-25T13:15:39.879Z","updated_at":"2023-10-25T13:15:42.954Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5481818,"commits_count":853721292,"contributors_count":31101221,"owners_count":907366,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"almeidasilvaf/cogeqc","html_url":"https://github.com/almeidasilvaf/cogeqc","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-08T11:04:42.130Z","updated_at":"2025-09-08T11:04:42.130Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/almeidasilvaf%2Fcogeqc/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164853,"issues_count":31989996,"pull_requests_count":100212161,"authors_count":10728603,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":3},"last_year":{"WatchEvent":3}},"keywords":["comparative-genomics","evolutionary-genomics","rstats"],"dependencies":[],"score":12.296571268337276,"created_at":"2025-09-08T10:47:09.647Z","updated_at":"2025-10-07T08:24:13.917Z","avatar_url":"https://github.com/almeidasilvaf.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/bioinformatics/btv351"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","immune-repertoire","grna-sequence","gene","ontology","sequencing","genomics","proteomics","bioinformatics","microbiome-data"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61909","html_url":"https://science.ecosyste.ms/projects/61909"}