{"id":61928,"name":"POMA","description":":package: Omics Data Analysis Tools","url":"https://github.com/pcastellanoescuder/poma","last_synced_at":"2025-09-08T12:34:36.606Z","repository":{"id":43334865,"uuid":"201123620","full_name":"pcastellanoescuder/POMA","owner":"pcastellanoescuder","description":":package: Omics Data Analysis Tools","archived":false,"fork":false,"pushed_at":"2024-11-26T23:39:40.000Z","size":42673,"stargazers_count":12,"open_issues_count":0,"forks_count":5,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-09-05T01:38:57.214Z","etag":null,"topics":["bioconductor","bioinformatics","data-visualization","dimension-reduction","exploratory-data-analysis","machine-learning","omics-data-integration","pipeline","pre-processing","r","r-package","rstats","statistical-analysis","user-friendly","workflow"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pcastellanoescuder.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-08-07T20:32:10.000Z","updated_at":"2025-06-11T16:55:10.000Z","dependencies_parsed_at":"2022-07-14T11:47:33.836Z","dependency_job_id":"8f5b9e39-fa26-4912-a6dd-670c7523c6e4","html_url":"https://github.com/pcastellanoescuder/POMA","commit_stats":{"total_commits":271,"total_committers":3,"mean_commits":90.33333333333333,"dds":"0.36900369003690037","last_synced_commit":"4b94bfca493e0d010427ad0152d0f5be9b400ed4"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/pcastellanoescuder/POMA","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pcastellanoescuder","download_url":"https://codeload.github.com/pcastellanoescuder/POMA/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174271,"owners_count":25235203,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"pcastellanoescuder","name":"Pol Castellano Escuder","uuid":"38317483","kind":"user","description":"Bioinformatician at Duke University. Computational Biology \u0026 Data Science | Multi-omics, Machine Learning, AI \u0026 Software Development\r\n","email":"","website":"https://pcastellanoescuder.github.io","location":"Durham, NC, US","twitter":"polcastellano_","company":"Duke Molecular Physiology Institute","icon_url":"https://avatars.githubusercontent.com/u/38317483?u=60b6504cd3ef7bdae77459430125c7268d7f9d22\u0026v=4","repositories_count":34,"last_synced_at":"2024-05-12T09:40:57.155Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/pcastellanoescuder","funding_links":[],"total_stars":45,"followers":49,"following":66,"created_at":"2023-03-04T19:37:17.365Z","updated_at":"2024-05-12T09:41:05.916Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pcastellanoescuder","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pcastellanoescuder/repositories"},"packages":[{"id":8420333,"name":"POMA","ecosystem":"bioconductor","description":"Tools for Omics Data Analysis","homepage":"https://github.com/pcastellanoescuder/POMA ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/pcastellanoescuder/POMA","keywords_array":["BatchEffect","Classification","Clustering","DecisionTree","DimensionReduction","MultidimensionalScaling","Normalization","Preprocessing","PrincipalComponent","RNASeq","Regression","Software","StatisticalMethod","Visualization"],"namespace":null,"versions_count":5,"first_release_published_at":"2023-10-12T14:52:28.136Z","latest_release_published_at":"2025-04-28T15:20:49.675Z","latest_release_number":"1.18.0","last_synced_at":"2025-09-04T11:18:59.181Z","created_at":"2023-10-12T14:52:27.948Z","updated_at":"2025-09-05T01:38:53.038Z","registry_url":"https://bioconductor.org/packages/POMA","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/POMA/inst/doc/POMA.pdf","metadata":{},"repo_metadata":{"id":43334865,"uuid":"201123620","full_name":"pcastellanoescuder/POMA","owner":"pcastellanoescuder","description":":package: Omics Data Analysis Tools","archived":false,"fork":false,"pushed_at":"2024-11-26T23:39:40.000Z","size":42673,"stargazers_count":12,"open_issues_count":0,"forks_count":5,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-08-02T04:49:57.578Z","etag":null,"topics":["bioconductor","bioinformatics","data-visualization","dimension-reduction","exploratory-data-analysis","machine-learning","omics-data-integration","pipeline","pre-processing","r","r-package","rstats","statistical-analysis","user-friendly","workflow"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pcastellanoescuder.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-08-07T20:32:10.000Z","updated_at":"2025-06-11T16:55:10.000Z","dependencies_parsed_at":"2022-07-14T11:47:33.836Z","dependency_job_id":"8f5b9e39-fa26-4912-a6dd-670c7523c6e4","html_url":"https://github.com/pcastellanoescuder/POMA","commit_stats":{"total_commits":271,"total_committers":3,"mean_commits":90.33333333333333,"dds":"0.36900369003690037","last_synced_commit":"4b94bfca493e0d010427ad0152d0f5be9b400ed4"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/pcastellanoescuder/POMA","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pcastellanoescuder","download_url":"https://codeload.github.com/pcastellanoescuder/POMA/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273699715,"owners_count":25152284,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"pcastellanoescuder","name":"Pol Castellano Escuder","uuid":"38317483","kind":"user","description":"Bioinformatician at Duke University. Computational Biology \u0026 Data Science | Multi-omics, Machine Learning, AI \u0026 Software Development\r\n","email":"","website":"https://pcastellanoescuder.github.io","location":"Durham, NC, US","twitter":"polcastellano_","company":"Duke Molecular Physiology Institute","icon_url":"https://avatars.githubusercontent.com/u/38317483?u=60b6504cd3ef7bdae77459430125c7268d7f9d22\u0026v=4","repositories_count":34,"last_synced_at":"2024-05-12T09:40:57.155Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/pcastellanoescuder","funding_links":[],"total_stars":45,"followers":49,"following":66,"created_at":"2023-03-04T19:37:17.365Z","updated_at":"2024-05-12T09:41:05.916Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pcastellanoescuder","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pcastellanoescuder/repositories"},"tags":[{"name":"v1.13.25","sha":"b2f377ecff31e71edb17619c27e0bf33f59b35b5","kind":"commit","published_at":"2024-03-11T17:03:55.000Z","download_url":"https://codeload.github.com/pcastellanoescuder/POMA/tar.gz/v1.13.25","html_url":"https://github.com/pcastellanoescuder/POMA/releases/tag/v1.13.25","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/pcastellanoescuder/POMA@v1.13.25","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/tags/v1.13.25","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/tags/v1.13.25/manifests"},{"name":"v1.0.0","sha":"c762f9f34b7489f2d769ca1bf0c17e3baa18d760","kind":"commit","published_at":"2020-10-29T11:35:37.000Z","download_url":"https://codeload.github.com/pcastellanoescuder/POMA/tar.gz/v1.0.0","html_url":"https://github.com/pcastellanoescuder/POMA/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/pcastellanoescuder/POMA@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/tags/v1.0.0/manifests"}]},"repo_metadata_updated_at":"2025-09-05T01:38:53.038Z","dependent_packages_count":1,"downloads":11560,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":77.23735408560312,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":25.74578469520104},"purl":"pkg:bioconductor/POMA","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/POMA","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/POMA","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/POMA/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/POMA/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/POMA/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/POMA/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/POMA/related_packages","maintainers":[{"uuid":"polcaes@gmail.com","login":null,"name":"Pol Castellano-Escuder","email":"polcaes@gmail.com","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-11-08T19:50:21.714Z","updated_at":"2023-11-08T19:50:21.714Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/polcaes@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403078,"full_name":"pcastellanoescuder/POMA","default_branch":"master","committers":[{"name":"Pol Castellano Escuder","email":"polcaes@gmail.com","login":null,"count":171},{"name":"pcastellanoescuder","email":"pol@MacBook-Pro-de-Pol.local","login":null,"count":92},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":8}],"total_commits":271,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":90.33333333333333,"dds":0.36900369003690037,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:05:20.877Z","last_synced_commit":"4b94bfca493e0d010427ad0152d0f5be9b400ed4","created_at":"2023-10-25T13:05:04.804Z","updated_at":"2023-10-25T13:05:20.877Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:13.651Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"pcastellanoescuder/POMA","html_url":"https://github.com/pcastellanoescuder/POMA","last_synced_at":"2025-09-05T06:21:59.530Z","status":"active","issues_count":8,"pull_requests_count":6,"avg_time_to_close_issue":685157.0,"avg_time_to_close_pull_request":1177452.5,"issues_closed_count":8,"pull_requests_closed_count":6,"pull_request_authors_count":1,"issue_authors_count":7,"avg_comments_per_issue":2.125,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":6,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-09-01T09:16:36.120Z","updated_at":"2025-09-05T06:21:59.530Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcastellanoescuder%2FPOMA/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":7,"OWNER":1},"pull_request_author_associations_count":{"OWNER":6},"issue_authors":{"adamsorbie":2,"pbaCamille":1,"rfilipesoares":1,"pcastellanoescuder":1,"Arm3de":1,"linlennypinawa":1,"MPietzke":1},"pull_request_authors":{"pcastellanoescuder":6},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164853,"issues_count":31989996,"pull_requests_count":100212161,"authors_count":10728603,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"pcastellanoescuder","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pcastellanoescuder"}],"active_maintainers":[]},"events":{"total":{"PushEvent":5},"last_year":{"PushEvent":5}},"keywords":["bioconductor","bioinformatics","data-visualization","dimension-reduction","exploratory-data-analysis","machine-learning","omics-data-integration","pipeline","pre-processing","r","r-package","rstats","statistical-analysis","user-friendly","workflow"],"dependencies":[],"score":12.938998076098532,"created_at":"2025-09-08T10:47:09.708Z","updated_at":"2025-10-07T08:24:14.208Z","avatar_url":"https://github.com/pcastellanoescuder.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["ontology"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61928","html_url":"https://science.ecosyste.ms/projects/61928"}