{"id":61949,"name":"OUTRIDER","description":"OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data","url":"https://github.com/gagneurlab/outrider","last_synced_at":"2025-09-08T12:34:49.666Z","repository":{"id":32420148,"uuid":"126519438","full_name":"gagneurlab/OUTRIDER","owner":"gagneurlab","description":"OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data","archived":false,"fork":false,"pushed_at":"2025-07-28T19:31:30.000Z","size":11456,"stargazers_count":53,"open_issues_count":15,"forks_count":14,"subscribers_count":11,"default_branch":"master","last_synced_at":"2025-09-02T12:57:38.787Z","etag":null,"topics":["count-data","diagnostics","expression-analysis","mendelian-genetics","outlier-detection","r","rna-seq"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/gagneurlab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2018-03-23T17:42:32.000Z","updated_at":"2025-07-28T19:29:45.000Z","dependencies_parsed_at":"2023-10-11T08:59:15.959Z","dependency_job_id":"d2320ebd-94d7-405f-8c9a-a8f222c2bc37","html_url":"https://github.com/gagneurlab/OUTRIDER","commit_stats":{"total_commits":416,"total_committers":18,"mean_commits":23.11111111111111,"dds":"0.44471153846153844","last_synced_commit":"067853af44effc99897a98bd3221baf7ea612e92"},"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/gagneurlab/OUTRIDER","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gagneurlab","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174271,"owners_count":25235203,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"gagneurlab","name":"Gagneur lab","uuid":"29893284","kind":"organization","description":"To understand the genetic basis of gene regulation and its implication in diseases.","email":null,"website":"www.gagneurlab.in.tum.de","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/29893284?v=4","repositories_count":18,"last_synced_at":"2023-03-02T00:40:31.928Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/gagneurlab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T19:30:30.502Z","updated_at":"2023-03-02T00:40:31.995Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gagneurlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gagneurlab/repositories"},"packages":[{"id":8420242,"name":"OUTRIDER","ecosystem":"bioconductor","description":"OUTRIDER - OUTlier in RNA-Seq fInDER","homepage":"https://github.com/gagneurlab/OUTRIDER ","licenses":"file LICENSE","normalized_licenses":["MIT-feh"],"repository_url":"https://github.com/gagneurlab/OUTRIDER","keywords_array":["Alignment","GeneExpression","Genetics","ImmunoOncology","RNASeq","Sequencing","Software","Transcriptomics"],"namespace":null,"versions_count":8,"first_release_published_at":"2023-10-12T14:50:32.436Z","latest_release_published_at":"2025-09-02T09:54:00.769Z","latest_release_number":"1.26.3","last_synced_at":"2025-09-02T09:54:02.273Z","created_at":"2023-10-12T14:50:32.217Z","updated_at":"2025-09-02T12:57:35.340Z","registry_url":"https://bioconductor.org/packages/OUTRIDER","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/OUTRIDER/inst/doc/OUTRIDER.pdf","metadata":{},"repo_metadata":{"id":32420148,"uuid":"126519438","full_name":"gagneurlab/OUTRIDER","owner":"gagneurlab","description":"OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data","archived":false,"fork":false,"pushed_at":"2025-07-28T19:31:30.000Z","size":11456,"stargazers_count":53,"open_issues_count":15,"forks_count":14,"subscribers_count":11,"default_branch":"master","last_synced_at":"2025-07-28T21:34:48.374Z","etag":null,"topics":["count-data","diagnostics","expression-analysis","mendelian-genetics","outlier-detection","r","rna-seq"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/gagneurlab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2018-03-23T17:42:32.000Z","updated_at":"2025-07-28T19:29:45.000Z","dependencies_parsed_at":"2023-10-11T08:59:15.959Z","dependency_job_id":"d2320ebd-94d7-405f-8c9a-a8f222c2bc37","html_url":"https://github.com/gagneurlab/OUTRIDER","commit_stats":{"total_commits":416,"total_committers":18,"mean_commits":23.11111111111111,"dds":"0.44471153846153844","last_synced_commit":"067853af44effc99897a98bd3221baf7ea612e92"},"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/gagneurlab/OUTRIDER","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gagneurlab","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273287618,"owners_count":25078573,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-02T02:00:09.530Z","response_time":77,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"gagneurlab","name":"Gagneur lab","uuid":"29893284","kind":"organization","description":"To understand the genetic basis of gene regulation and its implication in diseases.","email":null,"website":"www.gagneurlab.in.tum.de","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/29893284?v=4","repositories_count":18,"last_synced_at":"2023-03-02T00:40:31.928Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/gagneurlab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T19:30:30.502Z","updated_at":"2023-03-02T00:40:31.995Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gagneurlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gagneurlab/repositories"},"tags":[{"name":"1.26.3","sha":"174dc266513e1c153312b962bc47712e45618d6b","kind":"commit","published_at":"2025-07-28T19:29:40.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/1.26.3","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/1.26.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@1.26.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.26.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.26.3/manifests"},{"name":"1.26.2","sha":"de5259e4bcbbb59c7d0f458639d033794766531f","kind":"commit","published_at":"2025-05-20T08:34:31.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/1.26.2","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/1.26.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@1.26.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.26.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.26.2/manifests"},{"name":"1.20.1","sha":"dc995884b0fb75f9947ae8cda8c6e81285152d72","kind":"commit","published_at":"2024-04-25T12:08:59.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/1.20.1","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/1.20.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@1.20.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.20.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.20.1/manifests"},{"name":"1.16.2","sha":"8de403c836fe19d42bec5161e0b70deb1bec943c","kind":"commit","published_at":"2023-01-08T22:18:36.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/1.16.2","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/1.16.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@1.16.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.16.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.16.2/manifests"},{"name":"1.7.1","sha":"31404907aa79e49a5d5909689c8ea4266b3a6882","kind":"commit","published_at":"2020-10-09T22:37:30.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/1.7.1","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/1.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@1.7.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.7.1/manifests"},{"name":"1.3.5","sha":"7fbdaafdc2311bbbb756d03bfa4cd421d8609e3d","kind":"commit","published_at":"2020-04-12T07:40:19.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/1.3.5","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/1.3.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@1.3.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.3.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/1.3.5/manifests"},{"name":"PaperVersion","sha":"496de5f07ff0bf30f3814b8e17d8b84b882f28b7","kind":"tag","published_at":"2018-09-28T09:35:36.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/PaperVersion","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/PaperVersion","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@PaperVersion","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/PaperVersion","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/PaperVersion/manifests"},{"name":"0.99.7","sha":"825278dc4bed1440914d2110669d846402eecd6a","kind":"commit","published_at":"2018-05-24T03:32:20.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/0.99.7","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/0.99.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@0.99.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/0.99.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/0.99.7/manifests"},{"name":"0.99.5","sha":"1ff35b2712216ef882ecde4726b0f31d56cafa0b","kind":"commit","published_at":"2018-03-29T17:42:33.000Z","download_url":"https://codeload.github.com/gagneurlab/OUTRIDER/tar.gz/0.99.5","html_url":"https://github.com/gagneurlab/OUTRIDER/releases/tag/0.99.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/gagneurlab/OUTRIDER@0.99.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/0.99.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/tags/0.99.5/manifests"}]},"repo_metadata_updated_at":"2025-09-02T12:57:35.340Z","dependent_packages_count":1,"downloads":23547,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":47.451790633608816,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":15.817263544536273},"purl":"pkg:bioconductor/OUTRIDER","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/OUTRIDER","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/OUTRIDER","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/OUTRIDER/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-28T22:02:59.330Z","issues_count":38,"pull_requests_count":40,"avg_time_to_close_issue":16001511.541666666,"avg_time_to_close_pull_request":2367026.95,"issues_closed_count":24,"pull_requests_closed_count":40,"pull_request_authors_count":8,"issue_authors_count":30,"avg_comments_per_issue":3.0789473684210527,"avg_comments_per_pull_request":0.225,"merged_pull_requests_count":37,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":6,"past_year_avg_time_to_close_issue":5442251.333333333,"past_year_avg_time_to_close_pull_request":40219.0,"past_year_issues_closed_count":3,"past_year_pull_requests_closed_count":6,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":5.5,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":6,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/issues","maintainers":[{"login":"andrearaithel","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/andrearaithel"},{"login":"AtaJadidAhari","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/AtaJadidAhari"},{"login":"brechtmann","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/brechtmann"}],"active_maintainers":[{"login":"andrearaithel","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/andrearaithel"},{"login":"AtaJadidAhari","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/AtaJadidAhari"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/OUTRIDER/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/OUTRIDER/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/OUTRIDER/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/OUTRIDER/related_packages","maintainers":[{"uuid":"mertes@in.tum.de","login":null,"name":"Christian Mertes","email":"mertes@in.tum.de","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-11-25T14:50:54.929Z","updated_at":"2023-11-25T14:50:54.929Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/mertes@in.tum.de/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403059,"full_name":"gagneurlab/OUTRIDER","default_branch":"master","committers":[{"name":"Christian Mertes","email":"mertes@in.tum.de","login":"c-mertes","count":232},{"name":"brechtma","email":"brechtma@in.tum.de","login":"brechtmann","count":112},{"name":"Smith Nicholas","email":"smith@in.tum.de","login":null,"count":21},{"name":"Ines Scheller","email":"scheller@in.tum.de","login":"ischeller","count":15},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"Vicente","email":"yepez@in.tum.de","login":null,"count":5},{"name":"Michaela Mueller","email":"mi.mueller@tum.de","login":null,"count":4},{"name":"nickhsmith","email":"smithnickh@gmail.com","login":"nickhsmith","count":4},{"name":"loipfins","email":"loipfins@in.tum.de","login":null,"count":3},{"name":"Vicente Yepez","email":"30469316+vyepez88","login":"vyepez88","count":2},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":"LiNk-NY","count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":2},{"name":"AtaJadidAhari","email":"atajadidahari@gmail.com","login":"AtaJadidAhari","count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":1},{"name":"Kayla-Morrell","email":"kayla.morrell@roswellpark.org","login":"Kayla-Morrell","count":1},{"name":"Michaela Müller","email":"mumichae@in.tum.de","login":"mumichae","count":1}],"total_commits":423,"total_committers":17,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":24.88235294117647,"dds":0.4515366430260047,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-05-20T00:13:35.386Z","last_synced_commit":"dc995884b0fb75f9947ae8cda8c6e81285152d72","created_at":"2023-10-25T13:04:57.445Z","updated_at":"2025-05-20T00:13:35.386Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"gagneurlab/OUTRIDER","html_url":"https://github.com/gagneurlab/OUTRIDER","last_synced_at":"2025-07-28T22:02:59.330Z","status":"error","issues_count":38,"pull_requests_count":40,"avg_time_to_close_issue":16001511.541666666,"avg_time_to_close_pull_request":2367026.95,"issues_closed_count":24,"pull_requests_closed_count":40,"pull_request_authors_count":8,"issue_authors_count":30,"avg_comments_per_issue":3.0789473684210527,"avg_comments_per_pull_request":0.225,"merged_pull_requests_count":37,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":6,"past_year_avg_time_to_close_issue":5442251.333333333,"past_year_avg_time_to_close_pull_request":40219.0,"past_year_issues_closed_count":3,"past_year_pull_requests_closed_count":6,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":5.5,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":6,"created_at":"2024-04-21T00:06:03.373Z","updated_at":"2025-09-03T02:46:31.862Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/gagneurlab%2FOUTRIDER/issues","issue_labels_count":{},"pull_request_labels_count":{"enhancement":2},"issue_author_associations_count":{"NONE":35,"CONTRIBUTOR":4},"pull_request_author_associations_count":{"CONTRIBUTOR":34,"COLLABORATOR":19,"NONE":1},"issue_authors":{"c-mertes":3,"naumenko-sa":3,"lemdcock":2,"xuwenjian85":2,"zyyy97":2,"m-pauper":2,"pkothiyal":1,"nickhsmith":1,"iaradsouza1":1,"ellango85":1,"J-Lye":1,"ktmf1991":1,"yhoogstrate":1,"ccasar":1,"hanxuelian":1,"AmrR101":1,"ricorona":1,"MichaelChirico":1,"furbelows":1,"fbattke":1,"juugeebee":1,"shukwong":1,"Hoeze":1,"drtconway":1,"bw2":1,"gk1610":1,"emariella":1,"Paranchai":1,"WGarrettJenkinson":1,"runjin326":1,"stefanches7":1},"pull_request_authors":{"c-mertes":19,"andrearaithel":10,"AtaJadidAhari":8,"nickhsmith":7,"ischeller":5,"vyepez88":3,"brechtmann":1,"loipf":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10122615,"issues_count":31721744,"pull_requests_count":98828394,"authors_count":10710967,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":4},"past_year_pull_request_author_associations_count":{"COLLABORATOR":8,"CONTRIBUTOR":3},"past_year_issue_authors":{"fbattke":1,"hanxuelian":1,"juugeebee":1,"MichaelChirico":1},"past_year_pull_request_authors":{"AtaJadidAhari":4,"andrearaithel":4,"c-mertes":3},"maintainers":[{"login":"andrearaithel","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/andrearaithel"},{"login":"AtaJadidAhari","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/AtaJadidAhari"},{"login":"brechtmann","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/brechtmann"}],"active_maintainers":[{"login":"AtaJadidAhari","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/AtaJadidAhari"},{"login":"andrearaithel","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/andrearaithel"}]},"events":{"total":{"CreateEvent":9,"ReleaseEvent":1,"IssuesEvent":5,"WatchEvent":5,"DeleteEvent":12,"IssueCommentEvent":14,"PushEvent":30,"PullRequestReviewCommentEvent":5,"PullRequestReviewEvent":9,"PullRequestEvent":11,"ForkEvent":3},"last_year":{"CreateEvent":9,"ReleaseEvent":1,"IssuesEvent":5,"WatchEvent":5,"DeleteEvent":12,"IssueCommentEvent":14,"PushEvent":30,"PullRequestReviewCommentEvent":5,"PullRequestReviewEvent":9,"PullRequestEvent":11,"ForkEvent":3}},"keywords":["count-data","diagnostics","expression-analysis","mendelian-genetics","outlier-detection","r","rna-seq"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-07T17:30:13.463Z","updated_at":"2022-08-07T17:30:13.463Z","repository_link":"https://github.com/gagneurlab/OUTRIDER/blob/master/DESCRIPTION","dependencies":[{"id":604653520,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.6","direct":true,"kind":"depends","optional":false},{"id":604653521,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":604653522,"package_name":"GenomicFeatures","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":604653523,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":604653524,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":604653525,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":604653526,"package_name":"BBmisc","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653527,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653528,"package_name":"DESeq2","ecosystem":"cran","requirements":"\u003e= 1.16.1","direct":true,"kind":"imports","optional":false},{"id":604653529,"package_name":"generics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653530,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653531,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653532,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653533,"package_name":"heatmaply","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653534,"package_name":"pheatmap","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653535,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653536,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653537,"package_name":"matrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653538,"package_name":"plotly","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653539,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653540,"package_name":"pcaMethods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653541,"package_name":"PRROC","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653542,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653543,"package_name":"Rcpp","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653544,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653545,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653546,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653547,"package_name":"splines","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653548,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653549,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":604653550,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653551,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653552,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653553,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653554,"package_name":"TxDb.Hsapiens.UCSC.hg19.knownGene","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653555,"package_name":"org.Hs.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653556,"package_name":"RMariaDB","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653557,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653558,"package_name":"beeswarm","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":604653559,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/check-bioc.yml","sha":null,"kind":"manifest","created_at":"2023-01-14T21:09:24.993Z","updated_at":"2023-01-14T21:09:24.993Z","repository_link":"https://github.com/gagneurlab/OUTRIDER/blob/master/.github/workflows/check-bioc.yml","dependencies":[{"id":6906423618,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":6906423619,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6906423620,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6906423621,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":6906423622,"package_name":"r-lib/actions/setup-tinytex","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6906423623,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"releases/v4","direct":true,"kind":"composite","optional":false},{"id":6906423624,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":6906423625,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":17.1195596849303,"created_at":"2025-09-08T10:47:27.215Z","updated_at":"2025-10-07T08:24:14.589Z","avatar_url":"https://github.com/gagneurlab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1016/j.ajhg.2018.10.025"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","aberrant-splicing","rare-disease","splicing","genomics","gene","bioinformatics","proteomics","annotation","proteomexchange"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61949","html_url":"https://science.ecosyste.ms/projects/61949"}