{"id":61956,"name":"QTLExperiment","description":"R/Bioconductor S4 class for QTL summary statistics and metadata","url":"https://github.com/dunstone-a/qtlexperiment","last_synced_at":"2025-09-08T12:34:51.598Z","repository":{"id":196982148,"uuid":"697577725","full_name":"dunstone-a/QTLExperiment","owner":"dunstone-a","description":"R/Bioconductor S4 class for QTL summary statistics and metadata","archived":false,"fork":false,"pushed_at":"2025-07-14T04:30:05.000Z","size":368,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-08-14T19:37:53.995Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dunstone-a.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-09-28T03:07:02.000Z","updated_at":"2025-07-14T04:30:09.000Z","dependencies_parsed_at":"2023-10-03T05:43:53.363Z","dependency_job_id":"bc357b06-e0a2-47a4-89f8-133ad4ee01b8","html_url":"https://github.com/dunstone-a/QTLExperiment","commit_stats":null,"previous_names":["dunstone-a/qtlexperiment"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/dunstone-a/QTLExperiment","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dunstone-a","download_url":"https://codeload.github.com/dunstone-a/QTLExperiment/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274174271,"owners_count":25235203,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"dunstone-a","name":"Millie","uuid":"53158915","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/53158915?u=2fb8c6c31f737f0cd0b8d4630a33a73d37f715b0\u0026v=4","repositories_count":1,"last_synced_at":"2023-09-28T14:14:07.573Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/dunstone-a","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-09-28T14:14:07.575Z","updated_at":"2023-09-28T14:14:07.575Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dunstone-a","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dunstone-a/repositories"},"packages":[{"id":8489187,"name":"QTLExperiment","ecosystem":"bioconductor","description":"S4 classes for QTL summary statistics and metadata","homepage":"https://github.com/dunstone-a/QTLExperiment ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/dunstone-a/QTLExperiment","keywords_array":["DataImport","DataRepresentation","FunctionalGenomics","Infrastructure","SNP","Sequencing","Software"],"namespace":null,"versions_count":4,"first_release_published_at":"2023-10-26T02:21:14.914Z","latest_release_published_at":"2025-05-13T06:05:07.140Z","latest_release_number":"2.0.1","last_synced_at":"2025-08-14T13:07:06.056Z","created_at":"2023-10-26T02:21:08.612Z","updated_at":"2025-08-14T19:22:28.904Z","registry_url":"https://bioconductor.org/packages/QTLExperiment","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/QTLExperiment/inst/doc/QTLExperiment.pdf","metadata":{},"repo_metadata":{"id":196982148,"uuid":"697577725","full_name":"dunstone-a/QTLExperiment","owner":"dunstone-a","description":"R/Bioconductor S4 class for QTL summary statistics and metadata","archived":false,"fork":false,"pushed_at":"2025-07-14T04:30:05.000Z","size":368,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-07-14T06:11:04.155Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dunstone-a.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-09-28T03:07:02.000Z","updated_at":"2025-07-14T04:30:09.000Z","dependencies_parsed_at":"2023-10-03T05:43:53.363Z","dependency_job_id":"bc357b06-e0a2-47a4-89f8-133ad4ee01b8","html_url":"https://github.com/dunstone-a/QTLExperiment","commit_stats":null,"previous_names":["dunstone-a/qtlexperiment"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/dunstone-a/QTLExperiment","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dunstone-a","download_url":"https://codeload.github.com/dunstone-a/QTLExperiment/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270470019,"owners_count":24589277,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-14T02:00:10.309Z","response_time":75,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"dunstone-a","name":"Millie","uuid":"53158915","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/53158915?u=2fb8c6c31f737f0cd0b8d4630a33a73d37f715b0\u0026v=4","repositories_count":1,"last_synced_at":"2023-09-28T14:14:07.573Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/dunstone-a","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-09-28T14:14:07.575Z","updated_at":"2023-09-28T14:14:07.575Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dunstone-a","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dunstone-a/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-14T19:22:28.903Z","dependent_packages_count":1,"downloads":4416,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":0.0,"dependent_packages_count":31.70943888647238,"stargazers_count":36.92909960852545,"forks_count":30.100043497172685,"docker_downloads_count":null,"average":24.684645498042627},"purl":"pkg:bioconductor/QTLExperiment","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/QTLExperiment","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/QTLExperiment","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/QTLExperiment/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-14T06:39:00.684Z","issues_count":0,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QTLExperiment/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QTLExperiment/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QTLExperiment/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/QTLExperiment/related_packages","maintainers":[{"uuid":"amelia.dunstone@svi.edu.au","login":null,"name":"Amelia Dunstone","email":"amelia.dunstone@svi.edu.au","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-10-31T01:27:53.551Z","updated_at":"2023-10-31T01:27:53.551Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/amelia.dunstone@svi.edu.au/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2505,"maintainers_count":3164,"namespaces_count":0,"keywords_count":1086,"github":"Bioconductor","metadata":{"funded_packages_count":3},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2025-09-08T06:51:28.460Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":11003501,"full_name":"dunstone-a/qtlexperiment","default_branch":"master","committers":[{"name":"dunstone-a","email":"amelia.dunstone@gmail.com","login":null,"count":51},{"name":"cazodi","email":"cazodi@svi.edu.au","login":null,"count":31},{"name":"Amelia Dunstone","email":"amelia.dunstone@svi.edu.au","login":null,"count":16},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":4},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty@users.noreply.github.com","login":null,"count":2},{"name":"Millie","email":"53158915+dunstone-a@users.noreply.github.com","login":null,"count":1}],"total_commits":107,"total_committers":7,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":15.285714285714286,"dds":0.5233644859813085,"past_year_committers":[{"name":"dunstone-a","email":"amelia.dunstone@gmail.com","login":null,"count":20},{"name":"Amelia Dunstone","email":"amelia.dunstone@svi.edu.au","login":null,"count":6},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"Millie","email":"53158915+dunstone-a@users.noreply.github.com","login":null,"count":1}],"past_year_total_commits":31,"past_year_total_committers":5,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":6.2,"past_year_dds":0.3548387096774194,"last_synced_at":"2025-09-08T11:19:51.181Z","last_synced_commit":"38de9a9a7b0c90b878e4ad4d371cce47c1928429","created_at":"2025-09-08T11:15:38.221Z","updated_at":"2025-09-08T11:19:46.906Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2Fqtlexperiment/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"dunstone-a/QTLExperiment","html_url":"https://github.com/dunstone-a/QTLExperiment","last_synced_at":"2025-08-15T02:57:50.223Z","status":"error","issues_count":0,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-01-21T00:33:30.415Z","updated_at":"2025-08-15T02:57:50.223Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/dunstone-a%2FQTLExperiment/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164853,"issues_count":31989996,"pull_requests_count":100212161,"authors_count":10728603,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"PushEvent":19,"CreateEvent":3},"last_year":{"WatchEvent":1,"PushEvent":19,"CreateEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-10-03T05:43:52.318Z","updated_at":"2023-10-03T05:43:52.318Z","repository_link":"https://github.com/dunstone-a/QTLExperiment/blob/devel/DESCRIPTION","dependencies":[{"id":14073648688,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14073648689,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073648690,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073648691,"package_name":"checkmate","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073648935,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073648936,"package_name":"collapse","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073649514,"package_name":"vroom","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073649901,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073649902,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073649903,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073649904,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073649905,"package_name":"ashr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073650738,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073650739,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14073650740,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14073650741,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14073650742,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14073650743,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14073650744,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":11.032499713595321,"created_at":"2025-09-08T10:47:27.234Z","updated_at":"2025-10-07T08:24:14.704Z","avatar_url":"https://github.com/dunstone-a.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["genomics","bioconductor-package","bioconductor","gene","u24ca289073","rna-seq-analysis","single-cell-analysis","single-cell-rna-seq"],"project_url":"https://science.ecosyste.ms/api/v1/projects/61956","html_url":"https://science.ecosyste.ms/projects/61956"}