{"id":62265,"name":"cnvpytor","description":"a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads","url":"https://github.com/abyzovlab/cnvpytor","last_synced_at":"2025-09-08T12:40:58.029Z","repository":{"id":35146835,"uuid":"207916235","full_name":"abyzovlab/CNVpytor","owner":"abyzovlab","description":"a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads","archived":false,"fork":false,"pushed_at":"2025-08-26T11:24:29.000Z","size":141529,"stargazers_count":202,"open_issues_count":59,"forks_count":30,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-08-26T14:48:15.758Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/abyzovlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-09-11T22:17:02.000Z","updated_at":"2025-08-26T11:24:33.000Z","dependencies_parsed_at":"2025-08-26T13:42:08.024Z","dependency_job_id":null,"html_url":"https://github.com/abyzovlab/CNVpytor","commit_stats":{"total_commits":353,"total_committers":8,"mean_commits":44.125,"dds":"0.21813031161473084","last_synced_commit":"1e1952cf3de9e5122eaa0dc260e73c525d8cd85a"},"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/abyzovlab/CNVpytor","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abyzovlab","download_url":"https://codeload.github.com/abyzovlab/CNVpytor/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/sbom","scorecard":{"id":162097,"data":{"date":"2025-08-11","repo":{"name":"github.com/abyzovlab/CNVpytor","commit":"e5ec56d45210ea8c1d4731d5c901b1319bfd2b6e"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.4,"checks":[{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":0,"reason":"Found 1/14 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Maintained","score":5,"reason":"2 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 5","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":0,"reason":"12 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2021-856 / GHSA-5545-2q6w-2gh6","Warn: Project is vulnerable to: GHSA-6p56-wp2h-9hxr","Warn: Project is vulnerable to: PYSEC-2019-108 / GHSA-9fq2-x9r6-wfmf","Warn: Project is vulnerable to: PYSEC-2021-857 / GHSA-f7c7-j99h-c22f","Warn: Project is vulnerable to: GHSA-fpfv-jqm9-f5jm","Warn: Project is vulnerable to: PYSEC-2014-14 / GHSA-652x-xj99-gmcc","Warn: Project is vulnerable to: GHSA-9hjg-9r4m-mvj7","Warn: Project is vulnerable to: GHSA-9wx4-h78v-vm56","Warn: Project is vulnerable to: PYSEC-2014-13 / GHSA-cfj3-7x9c-4p3h","Warn: Project is vulnerable to: PYSEC-2018-28 / GHSA-x84v-xcm2-53pg","Warn: Project is vulnerable to: PYSEC-2023-102","Warn: Project is vulnerable to: PYSEC-2023-114"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 25 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-16T13:46:20.880Z","repository_id":35146835,"created_at":"2025-08-16T13:46:20.880Z","updated_at":"2025-08-16T13:46:20.880Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274187359,"owners_count":25237780,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"abyzovlab","name":"Abyzov lab","uuid":"8042557","kind":"organization","description":"Software packages developed in Abyzov's lab","email":null,"website":"http://abyzovlab.org","location":"Rochester, MN","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/8042557?v=4","repositories_count":11,"last_synced_at":"2024-03-15T23:20:46.605Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/abyzovlab","funding_links":[],"total_stars":368,"followers":null,"following":null,"created_at":"2022-11-08T20:25:43.880Z","updated_at":"2024-03-15T23:20:48.634Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abyzovlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abyzovlab/repositories"},"packages":[{"id":2674320,"name":"cnvpytor","ecosystem":"pypi","description":"Python extension of CNVnator","homepage":"https://github.com/abyzovlab/CNVpytor","licenses":"MIT License","normalized_licenses":["MIT"],"repository_url":"https://github.com/abyzovlab/CNVpytor","keywords_array":[],"namespace":null,"versions_count":7,"first_release_published_at":"2019-12-02T21:22:47.000Z","latest_release_published_at":"2025-03-12T22:56:18.000Z","latest_release_number":"1.3.2","last_synced_at":"2025-08-26T17:07:14.624Z","created_at":"2022-04-10T10:23:30.824Z","updated_at":"2025-08-26T17:53:00.089Z","registry_url":"https://pypi.org/project/cnvpytor/","install_command":"pip install cnvpytor --index-url https://pypi.org/simple","documentation_url":"https://cnvpytor.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 3 - Alpha","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python :: 2","Programming Language :: Python :: 2.7","Programming Language :: Python :: 3","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Programming Language :: Python :: 3.7"],"normalized_name":"cnvpytor","project_status":null},"repo_metadata":{"id":35146835,"uuid":"207916235","full_name":"abyzovlab/CNVpytor","owner":"abyzovlab","description":"a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads","archived":false,"fork":false,"pushed_at":"2025-08-26T11:24:29.000Z","size":141529,"stargazers_count":202,"open_issues_count":59,"forks_count":30,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-08-26T14:48:15.758Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/abyzovlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-09-11T22:17:02.000Z","updated_at":"2025-08-26T11:24:33.000Z","dependencies_parsed_at":"2025-08-26T13:42:08.024Z","dependency_job_id":null,"html_url":"https://github.com/abyzovlab/CNVpytor","commit_stats":{"total_commits":353,"total_committers":8,"mean_commits":44.125,"dds":"0.21813031161473084","last_synced_commit":"1e1952cf3de9e5122eaa0dc260e73c525d8cd85a"},"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/abyzovlab/CNVpytor","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abyzovlab","download_url":"https://codeload.github.com/abyzovlab/CNVpytor/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/sbom","scorecard":{"id":162097,"data":{"date":"2025-08-11","repo":{"name":"github.com/abyzovlab/CNVpytor","commit":"e5ec56d45210ea8c1d4731d5c901b1319bfd2b6e"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.4,"checks":[{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":0,"reason":"Found 1/14 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Maintained","score":5,"reason":"2 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 5","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":0,"reason":"12 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2021-856 / GHSA-5545-2q6w-2gh6","Warn: Project is vulnerable to: GHSA-6p56-wp2h-9hxr","Warn: Project is vulnerable to: PYSEC-2019-108 / GHSA-9fq2-x9r6-wfmf","Warn: Project is vulnerable to: PYSEC-2021-857 / GHSA-f7c7-j99h-c22f","Warn: Project is vulnerable to: GHSA-fpfv-jqm9-f5jm","Warn: Project is vulnerable to: PYSEC-2014-14 / GHSA-652x-xj99-gmcc","Warn: Project is vulnerable to: GHSA-9hjg-9r4m-mvj7","Warn: Project is vulnerable to: GHSA-9wx4-h78v-vm56","Warn: Project is vulnerable to: PYSEC-2014-13 / GHSA-cfj3-7x9c-4p3h","Warn: Project is vulnerable to: PYSEC-2018-28 / GHSA-x84v-xcm2-53pg","Warn: Project is vulnerable to: PYSEC-2023-102","Warn: Project is vulnerable to: PYSEC-2023-114"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 25 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-16T13:46:20.880Z","repository_id":35146835,"created_at":"2025-08-16T13:46:20.880Z","updated_at":"2025-08-16T13:46:20.880Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272242380,"owners_count":24898428,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-26T02:00:07.904Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"abyzovlab","name":"Abyzov lab","uuid":"8042557","kind":"organization","description":"Software packages developed in Abyzov's lab","email":null,"website":"http://abyzovlab.org","location":"Rochester, MN","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/8042557?v=4","repositories_count":11,"last_synced_at":"2024-03-15T23:20:46.605Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/abyzovlab","funding_links":[],"total_stars":368,"followers":null,"following":null,"created_at":"2022-11-08T20:25:43.880Z","updated_at":"2024-03-15T23:20:48.634Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abyzovlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/abyzovlab/repositories"},"tags":[{"name":"v1.3.2","sha":"3adc56fc6433ab8d76db1f151720cc4a4e487f20","kind":"commit","published_at":"2025-03-13T18:42:14.000Z","download_url":"https://codeload.github.com/abyzovlab/CNVpytor/tar.gz/v1.3.2","html_url":"https://github.com/abyzovlab/CNVpytor/releases/tag/v1.3.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/abyzovlab/CNVpytor@v1.3.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.3.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.3.2/manifests"},{"name":"v1.3.1","sha":"dfe3f2166258f46133f80aec89c7693cf0c7e12d","kind":"commit","published_at":"2023-04-21T17:54:33.000Z","download_url":"https://codeload.github.com/abyzovlab/CNVpytor/tar.gz/v1.3.1","html_url":"https://github.com/abyzovlab/CNVpytor/releases/tag/v1.3.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/abyzovlab/CNVpytor@v1.3.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.3.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.3.1/manifests"},{"name":"v1.2.1","sha":"170996eda38afe7bfade683e575b1b1ee1e1ec9e","kind":"commit","published_at":"2022-04-21T16:53:36.000Z","download_url":"https://codeload.github.com/abyzovlab/CNVpytor/tar.gz/v1.2.1","html_url":"https://github.com/abyzovlab/CNVpytor/releases/tag/v1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/abyzovlab/CNVpytor@v1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.2.1/manifests"},{"name":"v1.0","sha":"54f9fe901eb982b482fef615378b741b16fcd0a6","kind":"commit","published_at":"2020-02-27T06:47:54.000Z","download_url":"https://codeload.github.com/abyzovlab/CNVpytor/tar.gz/v1.0","html_url":"https://github.com/abyzovlab/CNVpytor/releases/tag/v1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/abyzovlab/CNVpytor@v1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/tags/v1.0/manifests"}]},"repo_metadata_updated_at":"2025-08-26T17:53:00.089Z","dependent_packages_count":0,"downloads":577,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":24.684247925548984,"dependent_repos_count":21.63438025370625,"dependent_packages_count":10.05962490376147,"stargazers_count":6.203016496164905,"forks_count":8.725161704419984,"docker_downloads_count":null,"average":14.26128625672032},"purl":"pkg:pypi/cnvpytor","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/cnvpytor","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/cnvpytor","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/cnvpytor/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-24T04:29:40.181Z","issues_count":165,"pull_requests_count":22,"avg_time_to_close_issue":4713251.044247787,"avg_time_to_close_pull_request":2421770.9545454546,"issues_closed_count":113,"pull_requests_closed_count":22,"pull_request_authors_count":6,"issue_authors_count":112,"avg_comments_per_issue":2.7818181818181817,"avg_comments_per_pull_request":0.22727272727272727,"merged_pull_requests_count":20,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":33,"past_year_pull_requests_count":10,"past_year_avg_time_to_close_issue":893815.8095238095,"past_year_avg_time_to_close_pull_request":31.7,"past_year_issues_closed_count":21,"past_year_pull_requests_closed_count":10,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":28,"past_year_avg_comments_per_issue":2.787878787878788,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":9,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/issues","maintainers":[{"login":"suvakov","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/suvakov"},{"login":"arpanda","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/arpanda"},{"login":"Coaxecva","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Coaxecva"}],"active_maintainers":[{"login":"Coaxecva","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Coaxecva"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cnvpytor/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cnvpytor/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cnvpytor/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/cnvpytor/related_packages","maintainers":[{"uuid":"suvakov","login":"suvakov","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/suvakov/","role":null,"created_at":"2023-02-07T10:18:50.220Z","updated_at":"2023-02-07T10:18:50.220Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/suvakov/packages"},{"uuid":"cmdpanda","login":"cmdpanda","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/cmdpanda/","role":null,"created_at":"2023-04-27T02:59:04.508Z","updated_at":"2023-04-27T02:59:04.508Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/cmdpanda/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726135,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":550383,"full_name":"abyzovlab/CNVpytor","default_branch":"master","committers":[{"name":"Milovan Suvakov","email":"suvakov@gmail.com","login":null,"count":276},{"name":"arpanda","email":"arijpanda@gmail.com","login":null,"count":70},{"name":"Mikhail Dozmorov","email":"mikhail.dozmorov@gmail.com","login":null,"count":2},{"name":"Bradford Powell","email":"bpow@unc.edu","login":null,"count":1},{"name":"abyzov","email":"abyzov.alexej@mayo.edu","login":null,"count":1},{"name":"Chase Mateusiak","email":"chasem@wustl.edu","login":null,"count":1},{"name":"Bradford Powell","email":"bpow@drpowell.org","login":null,"count":1},{"name":"chase mateusiak","email":"chase.mateusiak@gmail.com","login":null,"count":1}],"total_commits":353,"total_committers":8,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":44.125,"dds":0.21813031161473084,"past_year_committers":[{"name":"suvakov","email":"suvakov@gmail.com","login":null,"count":17},{"name":"arpanda","email":"arijpanda@gmail.com","login":null,"count":14}],"past_year_total_commits":31,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":15.5,"past_year_dds":0.4516129032258065,"last_synced_at":"2023-10-25T13:58:25.473Z","last_synced_commit":"1e1952cf3de9e5122eaa0dc260e73c525d8cd85a","created_at":"2023-03-09T04:37:56.415Z","updated_at":"2023-10-25T13:58:25.474Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"abyzovlab/CNVpytor","html_url":"https://github.com/abyzovlab/CNVpytor","last_synced_at":"2025-08-31T11:55:10.253Z","status":null,"issues_count":169,"pull_requests_count":21,"avg_time_to_close_issue":4675661.2105263155,"avg_time_to_close_pull_request":2537093.0,"issues_closed_count":114,"pull_requests_closed_count":21,"pull_request_authors_count":6,"issue_authors_count":116,"avg_comments_per_issue":2.650887573964497,"avg_comments_per_pull_request":0.23809523809523808,"merged_pull_requests_count":19,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":32,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":956418.5,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":20,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":28,"past_year_avg_comments_per_issue":1.90625,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T10:47:17.533Z","updated_at":"2025-09-03T05:59:09.274Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/abyzovlab%2FCNVpytor/issues","issue_labels_count":{"documentation":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":162,"MEMBER":2,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"MEMBER":26,"CONTRIBUTOR":3,"NONE":2},"issue_authors":{"zainabae":10,"gevro":6,"xiucz":4,"GENEDECODERS":4,"hayeon-pak":3,"maryawood":3,"KrithikaSubramanian":3,"NinaGerrekens":3,"lucsnip":3,"ZYongQi":3,"Swanthana-bioinfo":3,"oceancongliu":2,"mpiersonsmela":2,"kaqisekuzi":2,"NannapatS":2,"pontushojer":2,"Indianhedgehog":2,"ramprasadn":2,"wbsimey":2,"lunalvan":2,"Xscut":2,"pauline-ng":2,"jordimaggi":2,"Tom159357":2,"sophie-03":2,"manburst":2,"dr-ashu-geno":2,"vasqomni":2,"miyakokodama":2,"briankegerreis":1,"ptoru001":1,"LawrenceLiu023":1,"shaze":1,"jotanan98":1,"mbradyneeley":1,"DLEE-BARC":1,"tania-k":1,"QianXiaobo":1,"ivanp1994":1,"xiaohuli-45":1,"rrazaghi":1,"zhoudreames":1,"RenscoHogers":1,"whtop":1,"s-kumarswi":1,"olya2808":1,"GiFleres":1,"ManavalanG":1,"adbeggs":1,"xiekunwhy":1,"7ehuang":1,"mdozmorov":1,"RSchwieger":1,"prabirbioinfo":1,"siqi-zZ":1,"saint7007":1,"AnkiGurao":1,"Beth96":1,"asp8200":1,"philippesanio":1,"jeffchen2000":1,"mjlarsen":1,"evayfang2019":1,"ChenDepp":1,"IdoBar":1,"avik94ab":1,"Coaxecva":1,"Johnsonzcode":1,"zyxNo1":1,"eporotti":1,"vembuprathima":1,"ld9866":1,"wushyer":1,"NilakshaFreeson":1,"OmonkeyGOD":1,"Hai1983":1,"archmageirvine":1,"lmanchon":1,"yymdasb":1,"Badr202":1,"minn333":1,"Azjer2014":1,"Albert-Stefansen":1,"whzhangkui":1,"LHlearningcode":1,"rain-zjg":1,"huangl07":1,"Laolga":1,"nods-sparrow":1,"Deleetdk":1,"fsnibs10":1,"arpanda":1,"geocarvalho":1,"anubhabkhan":1,"scikal":1,"huymtraan":1,"DammyShittu95":1,"forrestzhaosen":1,"astrophys":1,"VaninaTonzo":1,"trjojack":1,"luizagomesdeoliveira":1,"bjhunt-git":1,"Adoni5":1,"lgmgeo":1,"isambmi":1,"thedam":1,"FanHongzeng":1,"tokiboggle":1,"AmruthaJNC":1,"chrisrhughes":1,"cfz1998":1,"Talo07":1},"pull_request_authors":{"suvakov":14,"arpanda":12,"archmageirvine":2,"bpow":1,"ManavalanG":1,"cmatKhan":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10112097,"issues_count":31599096,"pull_requests_count":98247709,"authors_count":10706903,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":30,"MEMBER":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"NinaGerrekens":3,"Tom159357":2,"pontushojer":2,"Xscut":1,"xiucz":1,"xiaohuli-45":1,"thedam":1,"s-kumarswi":1,"RSchwieger":1,"rain-zjg":1,"prabirbioinfo":1,"OmonkeyGOD":1,"NilakshaFreeson":1,"NannapatS":1,"mpiersonsmela":1,"Johnsonzcode":1,"isambmi":1,"huymtraan":1,"geocarvalho":1,"eporotti":1,"DLEE-BARC":1,"Coaxecva":1,"ChenDepp":1,"avik94ab":1,"AnkiGurao":1,"AmruthaJNC":1,"adbeggs":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"suvakov","count":14,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/suvakov"},{"login":"arpanda","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/arpanda"},{"login":"Coaxecva","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Coaxecva"}],"active_maintainers":[{"login":"Coaxecva","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Coaxecva"}]},"events":{"total":{"CreateEvent":2,"ReleaseEvent":1,"IssuesEvent":45,"WatchEvent":20,"IssueCommentEvent":58,"PushEvent":7,"PullRequestEvent":1,"PullRequestReviewEvent":1,"ForkEvent":2},"last_year":{"CreateEvent":2,"ReleaseEvent":1,"IssuesEvent":45,"WatchEvent":20,"IssueCommentEvent":58,"PushEvent":7,"PullRequestEvent":1,"PullRequestReviewEvent":1,"ForkEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2025-07-24T02:25:17.635Z","updated_at":"2025-07-24T02:25:17.635Z","repository_link":"https://github.com/abyzovlab/CNVpytor/blob/master/requirements.txt","dependencies":[{"id":24301507162,"package_name":"requests","ecosystem":"pypi","requirements":"\u003e=2.0","direct":true,"kind":"runtime","optional":false},{"id":24301507163,"package_name":"gnureadline","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24301507166,"package_name":"pathlib","ecosystem":"pypi","requirements":"\u003e=1.0","direct":true,"kind":"runtime","optional":false},{"id":24301507167,"package_name":"pysam","ecosystem":"pypi","requirements":"\u003e=0.15","direct":true,"kind":"runtime","optional":false},{"id":24301507170,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.16","direct":true,"kind":"runtime","optional":false},{"id":24301507171,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.1","direct":true,"kind":"runtime","optional":false},{"id":24301507172,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003e=2.2","direct":true,"kind":"runtime","optional":false},{"id":24301507173,"package_name":"h5py","ecosystem":"pypi","requirements":"\u003e=2.9","direct":true,"kind":"runtime","optional":false},{"id":24301507174,"package_name":"xlsxwriter","ecosystem":"pypi","requirements":"\u003e=1.3","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2025-07-24T02:25:20.358Z","updated_at":"2025-07-24T02:25:20.358Z","repository_link":"https://github.com/abyzovlab/CNVpytor/blob/master/setup.py","dependencies":[{"id":24301507175,"package_name":"gnureadline","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24301507176,"package_name":"requests","ecosystem":"pypi","requirements":"\u003e=2.0","direct":true,"kind":"runtime","optional":false},{"id":24301507177,"package_name":"pysam","ecosystem":"pypi","requirements":"\u003e=0.15","direct":true,"kind":"runtime","optional":false},{"id":24301507178,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.16","direct":true,"kind":"runtime","optional":false},{"id":24301507179,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.1","direct":true,"kind":"runtime","optional":false},{"id":24301507180,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003e=2.2","direct":true,"kind":"runtime","optional":false},{"id":24301507181,"package_name":"h5py","ecosystem":"pypi","requirements":"\u003e=2.9","direct":true,"kind":"runtime","optional":false},{"id":24301507182,"package_name":"xlsxwriter","ecosystem":"pypi","requirements":"\u003e=1.3","direct":true,"kind":"runtime","optional":false}]}],"score":14.006990052542994,"created_at":"2025-09-08T11:18:24.603Z","updated_at":"2025-10-07T08:24:19.151Z","avatar_url":"https://github.com/abyzovlab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":577,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/gigascience/giab074"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/62265","html_url":"https://science.ecosyste.ms/projects/62265"}