{"id":62472,"name":"rck","description":"RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes","url":"https://github.com/aganezov/rck","last_synced_at":"2025-09-08T12:44:20.957Z","repository":{"id":57460251,"uuid":"111738079","full_name":"aganezov/RCK","owner":"aganezov","description":"RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes","archived":false,"fork":false,"pushed_at":"2020-04-02T22:54:47.000Z","size":1965,"stargazers_count":17,"open_issues_count":1,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-16T05:23:52.802Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/aganezov.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-11-22T22:23:01.000Z","updated_at":"2024-10-21T14:33:16.000Z","dependencies_parsed_at":"2022-08-28T13:52:36.572Z","dependency_job_id":null,"html_url":"https://github.com/aganezov/RCK","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/aganezov/RCK","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aganezov","download_url":"https://codeload.github.com/aganezov/RCK/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274187896,"owners_count":25237845,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"aganezov","name":"Sergey Aganezov","uuid":"1204593","kind":"user","description":"Husband, Son, Ph.D., Genomic Applications Scientist @nanoporetech. I'm fascinated about everything, that has something unknown in it! Views are my own.","email":"","website":null,"location":"Cambridge, MA, USA","twitter":null,"company":"@nanoporetech","icon_url":"https://avatars.githubusercontent.com/u/1204593?v=4","repositories_count":11,"last_synced_at":"2023-04-04T19:47:09.939Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/aganezov","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-04T15:06:46.409Z","updated_at":"2023-04-04T19:47:09.975Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aganezov","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aganezov/repositories"},"packages":[{"id":2898157,"name":"rck","ecosystem":"pypi","description":"A tool for (R)econstruction of (C)ancer (K)aryotypes (both clone- and haplotype-specific)","homepage":"https://github.com/aganezov/rck","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/aganezov/rck","keywords_array":["RCK","rck","cancer","cancer genomics","cancer karyotypes","clonality","subclonality","copy number aberrations","breakpoints","structural variations","novel adjacencies"],"namespace":null,"versions_count":3,"first_release_published_at":"2019-02-25T17:12:31.000Z","latest_release_published_at":"2019-11-19T15:54:12.000Z","latest_release_number":"1.1.0","last_synced_at":"2025-08-16T00:30:46.701Z","created_at":"2022-04-10T12:26:07.811Z","updated_at":"2025-08-16T05:07:58.465Z","registry_url":"https://pypi.org/project/rck/","install_command":"pip install rck --index-url https://pypi.org/simple","documentation_url":"https://rck.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":[],"normalized_name":"rck","project_status":null},"repo_metadata":{"id":57460251,"uuid":"111738079","full_name":"aganezov/RCK","owner":"aganezov","description":"RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes","archived":false,"fork":false,"pushed_at":"2020-04-02T22:54:47.000Z","size":1965,"stargazers_count":17,"open_issues_count":1,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-05-29T15:38:37.122Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/aganezov.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-11-22T22:23:01.000Z","updated_at":"2024-10-21T14:33:16.000Z","dependencies_parsed_at":"2022-08-28T13:52:36.572Z","dependency_job_id":null,"html_url":"https://github.com/aganezov/RCK","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/aganezov/RCK","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aganezov","download_url":"https://codeload.github.com/aganezov/RCK/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270670063,"owners_count":24625444,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-16T02:00:11.002Z","response_time":91,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"aganezov","name":"Sergey Aganezov","uuid":"1204593","kind":"user","description":"Husband, Son, Ph.D., Genomic Applications Scientist @nanoporetech. I'm fascinated about everything, that has something unknown in it! Views are my own.","email":"","website":null,"location":"Cambridge, MA, USA","twitter":null,"company":"@nanoporetech","icon_url":"https://avatars.githubusercontent.com/u/1204593?v=4","repositories_count":11,"last_synced_at":"2023-04-04T19:47:09.939Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/aganezov","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-04T15:06:46.409Z","updated_at":"2023-04-04T19:47:09.975Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aganezov","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/aganezov/repositories"},"tags":[{"name":"v1.1","sha":"0ebc9a986657d6129612bea85c9d5f6dc205b279","kind":"commit","published_at":"2019-11-19T15:39:54.000Z","download_url":"https://codeload.github.com/aganezov/RCK/tar.gz/v1.1","html_url":"https://github.com/aganezov/RCK/releases/tag/v1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aganezov/RCK@v1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/tags/v1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/tags/v1.1/manifests"},{"name":"v1.0","sha":"519bcb30b0d750791fb720531f6bc245c48acb1b","kind":"commit","published_at":"2019-07-17T14:17:11.000Z","download_url":"https://codeload.github.com/aganezov/RCK/tar.gz/v1.0","html_url":"https://github.com/aganezov/RCK/releases/tag/v1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/aganezov/RCK@v1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/tags/v1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/tags/v1.0/manifests"}]},"repo_metadata_updated_at":"2025-08-16T05:07:58.465Z","dependent_packages_count":0,"downloads":21,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":36.0547847399625,"dependent_repos_count":21.727697944596816,"dependent_packages_count":9.995259271770403,"stargazers_count":14.506517011790313,"forks_count":15.338153356582557,"docker_downloads_count":null,"average":19.52448246494052},"purl":"pkg:pypi/rck","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/rck","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/rck","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/rck/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-05-29T15:19:11.758Z","issues_count":1,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":1,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/rck/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/rck/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/rck/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/rck/related_packages","maintainers":[{"uuid":"aganezov","login":"aganezov","name":null,"email":null,"url":null,"packages_count":5,"html_url":"https://pypi.org/user/aganezov/","role":null,"created_at":"2023-02-25T07:55:32.559Z","updated_at":"2023-02-25T07:55:32.559Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/aganezov/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726135,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":648414,"full_name":"aganezov/RCK","default_branch":"master","committers":[{"name":"aganezov","email":"aganezov@cs.jhu.edu","login":null,"count":185},{"name":"Sergey Aganezov","email":"aganezov@cs.princeton.edu","login":null,"count":13}],"total_commits":198,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":99.0,"dds":0.06565656565656564,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:44:01.436Z","last_synced_commit":"4c6c288bfe1e20905069d842bc58609b10568c7e","created_at":"2023-03-09T09:17:10.763Z","updated_at":"2023-10-25T14:44:01.437Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"aganezov/RCK","html_url":"https://github.com/aganezov/RCK","last_synced_at":"2025-08-16T05:08:21.109Z","status":"error","issues_count":1,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":1,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T22:47:55.277Z","updated_at":"2025-08-16T05:08:21.109Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/aganezov%2FRCK/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"mzwaig":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10110424,"issues_count":31574764,"pull_requests_count":98130433,"authors_count":10706839,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-28T13:52:36.566Z","updated_at":"2022-08-28T13:52:36.566Z","repository_link":"https://github.com/aganezov/RCK/blob/master/setup.py","dependencies":[{"id":3041122348,"package_name":"networkx","ecosystem":"pypi","requirements":"\u003e=2","direct":true,"kind":"runtime","optional":false},{"id":3041122349,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3041122350,"package_name":"pyvcf","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3041122351,"package_name":"pysam","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3041122352,"package_name":"sortedcontainers","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3041122353,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3041122354,"package_name":"gffutils","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":6.71901315438526,"created_at":"2025-09-08T11:18:25.730Z","updated_at":"2025-10-07T08:24:21.679Z","avatar_url":"https://github.com/aganezov.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":21,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/62472","html_url":"https://science.ecosyste.ms/projects/62472"}