{"id":63339,"name":"ecmtool","description":"Uncover organisms' metabolic blueprints","url":"https://github.com/systemsbioinformatics/ecmtool","last_synced_at":"2025-09-08T12:56:31.129Z","repository":{"id":40691656,"uuid":"151599182","full_name":"SystemsBioinformatics/ecmtool","owner":"SystemsBioinformatics","description":"Uncover organisms' metabolic blueprints","archived":false,"fork":false,"pushed_at":"2024-06-18T00:29:09.000Z","size":54730,"stargazers_count":13,"open_issues_count":1,"forks_count":6,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-08-16T03:28:53.811Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SystemsBioinformatics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-10-04T16:04:30.000Z","updated_at":"2025-04-03T21:45:04.000Z","dependencies_parsed_at":"2022-07-14T06:20:30.482Z","dependency_job_id":"08471cde-b8c3-4f9a-83c7-b8ad8c3ae301","html_url":"https://github.com/SystemsBioinformatics/ecmtool","commit_stats":{"total_commits":417,"total_committers":6,"mean_commits":69.5,"dds":0.592326139088729,"last_synced_commit":"27269efef028521274c0594520e998b8fdb6aae8"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SystemsBioinformatics","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/sbom","scorecard":{"id":136771,"data":{"date":"2025-08-04","repo":{"name":"github.com/SystemsBioinformatics/ecmtool","commit":"250b26fc9bbcb212f6aaecc8dcd16d48f4bb5403"},"scorecard":{"version":"v5.2.1-28-gc1d103a9","commit":"c1d103a9bb9f635ec7260bf9aa0699466fa4be0e"},"score":2.7,"checks":[{"name":"Maintained","score":0,"reason":"0 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 0/4 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#packaging"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/tests.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#token-permissions"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":3,"reason":"binaries present in source code","details":["Warn: binary detected: ecmtool/polco/polco.jar:1","Warn: binary detected: ecmtool/redund/cyggcc_s-1.dll:1","Warn: binary detected: ecmtool/redund/cyggmp-10.dll:1","Warn: binary detected: ecmtool/redund/cygstdc++-6.dll:1","Warn: binary detected: ecmtool/redund/cygwin1.dll:1","Warn: binary detected: ecmtool/redund/redund_mac:1","Warn: binary detected: ecmtool/redund/redund_win.exe:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":9,"reason":"1 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2024-110 / GHSA-jw8x-6495-233v"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 27 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: containerImage not pinned by hash: docker/Dockerfile:1: pin your Docker image by updating python:3.10-slim to python:3.10-slim@sha256:81f1cdb3770d54ecfdbddcc52c2125fce674c14a1d976dfd8f65dc0734f9c3c5","Warn: pipCommand not pinned by hash: docker/Dockerfile:18","Warn: pipCommand not pinned by hash: docker/Dockerfile:18","Info:   0 out of   2 pipCommand dependencies pinned","Info:   0 out of   1 containerImage dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/c1d103a9bb9f635ec7260bf9aa0699466fa4be0e/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-16T06:43:58.138Z","repository_id":40691656,"created_at":"2025-08-16T06:43:58.138Z","updated_at":"2025-08-16T06:43:58.138Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274188915,"owners_count":25237853,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"SystemsBioinformatics","name":"Systems Biology Lab, Vrije Universiteit Amsterdam","uuid":"12168054","kind":"organization","description":"This is the code repository of the Systems Biology Lab. Our lab studies the molecular networks inside cells that give rise to cell behaviour and fitness.","email":null,"website":"http://teusinkbruggemanlab.nl/","location":"Amsterdam, The Netherlands","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/12168054?v=4","repositories_count":6,"last_synced_at":"2023-03-03T04:30:57.745Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/SystemsBioinformatics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T17:17:42.887Z","updated_at":"2023-03-03T04:30:57.751Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SystemsBioinformatics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SystemsBioinformatics/repositories"},"packages":[{"id":2720140,"name":"ecmtool","ecosystem":"pypi","description":"Calculates elementary conversion modes (Urbanczik \u0026 Wagner, 2005) of metabolic networks.","homepage":"https://github.com/SystemsBioinformatics/ecmtool","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/SystemsBioinformatics/ecmtool","keywords_array":[],"namespace":null,"versions_count":11,"first_release_published_at":"2019-02-18T14:07:30.000Z","latest_release_published_at":"2021-06-05T09:46:51.000Z","latest_release_number":"0.1.12","last_synced_at":"2025-08-15T22:04:31.480Z","created_at":"2022-04-10T10:51:29.062Z","updated_at":"2025-08-16T06:54:57.640Z","registry_url":"https://pypi.org/project/ecmtool/","install_command":"pip install ecmtool --index-url https://pypi.org/simple","documentation_url":"https://ecmtool.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":[],"normalized_name":"ecmtool","project_status":null},"repo_metadata":{"id":40691656,"uuid":"151599182","full_name":"SystemsBioinformatics/ecmtool","owner":"SystemsBioinformatics","description":"Uncover organisms' metabolic blueprints","archived":false,"fork":false,"pushed_at":"2024-06-18T00:29:09.000Z","size":54730,"stargazers_count":13,"open_issues_count":2,"forks_count":6,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-06-25T17:58:50.704Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SystemsBioinformatics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-10-04T16:04:30.000Z","updated_at":"2025-04-03T21:45:04.000Z","dependencies_parsed_at":"2022-07-14T06:20:30.482Z","dependency_job_id":"08471cde-b8c3-4f9a-83c7-b8ad8c3ae301","html_url":"https://github.com/SystemsBioinformatics/ecmtool","commit_stats":{"total_commits":417,"total_committers":6,"mean_commits":69.5,"dds":0.592326139088729,"last_synced_commit":"27269efef028521274c0594520e998b8fdb6aae8"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SystemsBioinformatics","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270660888,"owners_count":24624104,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-16T02:00:11.002Z","response_time":91,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"SystemsBioinformatics","name":"Systems Biology Lab, Vrije Universiteit Amsterdam","uuid":"12168054","kind":"organization","description":"This is the code repository of the Systems Biology Lab. Our lab studies the molecular networks inside cells that give rise to cell behaviour and fitness.","email":null,"website":"http://teusinkbruggemanlab.nl/","location":"Amsterdam, The Netherlands","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/12168054?v=4","repositories_count":6,"last_synced_at":"2023-03-03T04:30:57.745Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/SystemsBioinformatics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T17:17:42.887Z","updated_at":"2023-03-03T04:30:57.751Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SystemsBioinformatics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SystemsBioinformatics/repositories"},"tags":[{"name":"v0.2.1","sha":"297304f2b24728a40b4ba98aa6a740f79e38eaa5","kind":"commit","published_at":"2023-05-22T11:26:33.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.2.1","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.2.1/manifests"},{"name":"pre_biomass_bug","sha":"5b8ef59f48032e91265b1800a395657bc94699d1","kind":"tag","published_at":"2022-04-08T12:20:37.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/pre_biomass_bug","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/pre_biomass_bug","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@pre_biomass_bug","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/pre_biomass_bug","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/pre_biomass_bug/manifests"},{"name":"v0.1.12","sha":"03fd031b00d36f660a8c38531ff644b639e7f3dd","kind":"tag","published_at":"2021-06-05T09:48:34.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.12","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.12/manifests"},{"name":"v0.1.11","sha":"47365f49f31ce30a29d5dc05ff275a8cab2f1c68","kind":"tag","published_at":"2021-05-18T18:51:48.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.11","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.11/manifests"},{"name":"v0.1.6","sha":"c81cc0d762755dc446b5975908a7496346352fe0","kind":"tag","published_at":"2020-06-05T14:44:13.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.6","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.6/manifests"},{"name":"v0.1.5","sha":"e84ae0f10d69740904c9dadc38f48ce5580aa88b","kind":"tag","published_at":"2019-02-22T13:39:41.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.5","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.5/manifests"},{"name":"v0.1.4","sha":"a2b5d75d932a158831e04d3120ea620e082cd27e","kind":"tag","published_at":"2019-02-19T15:36:29.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.4","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.4/manifests"},{"name":"v0.1.3","sha":"e79eb8433505a9731927f01e4cfb37e39d0b0b30","kind":"tag","published_at":"2019-02-19T08:10:47.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.3","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.3/manifests"},{"name":"v0.1.2","sha":"34b6ae4327b0f2be5a5e74d1b1de12e10d5002a1","kind":"tag","published_at":"2019-02-18T13:57:21.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.2","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.2/manifests"},{"name":"v0.1.1","sha":"6d3de470b5aad902d1389d50b2cb0f454d7373de","kind":"tag","published_at":"2019-02-18T13:46:35.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.1","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.1/manifests"},{"name":"v0.1.0","sha":"7a7f57189359fdacda3fab55d206ea042113529c","kind":"tag","published_at":"2019-01-16T11:06:27.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.1.0","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.1.0/manifests"},{"name":"v0.0.4","sha":"6d6c1b5709461248aec243ef586f3b6ee1e82bd3","kind":"tag","published_at":"2019-01-14T08:48:10.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.0.4","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.0.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.0.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.4/manifests"},{"name":"v0.0.3","sha":"838aa9cf9c8fd702e59dbe7312e0d769b77d1d74","kind":"tag","published_at":"2018-12-04T09:12:19.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.0.3","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.0.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.0.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.3/manifests"},{"name":"v0.0.2","sha":"38073369b9ce978a39d68a113b15feaf1f75e8e0","kind":"tag","published_at":"2018-11-27T10:17:01.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.0.2","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.0.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.0.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.2/manifests"},{"name":"v0.0.1","sha":"e551769728978db02e4ed78645d36cf97066b9dd","kind":"tag","published_at":"2018-11-22T12:06:07.000Z","download_url":"https://codeload.github.com/SystemsBioinformatics/ecmtool/tar.gz/v0.0.1","html_url":"https://github.com/SystemsBioinformatics/ecmtool/releases/tag/v0.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/SystemsBioinformatics/ecmtool@v0.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/tags/v0.0.1/manifests"}]},"repo_metadata_updated_at":"2025-08-16T06:54:57.639Z","dependent_packages_count":0,"downloads":26,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":24.001775216976277,"dependent_repos_count":21.66152068531463,"dependent_packages_count":10.032368031403879,"stargazers_count":16.50310856049737,"forks_count":13.288353346048117,"docker_downloads_count":2.9578022507761794,"average":14.740821348502742},"purl":"pkg:pypi/ecmtool","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/ecmtool","docker_dependents_count":1,"docker_downloads_count":68,"usage_url":"https://repos.ecosyste.ms/usage/pypi/ecmtool","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/ecmtool/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-16T02:52:47.890Z","issues_count":12,"pull_requests_count":15,"avg_time_to_close_issue":8056836.363636363,"avg_time_to_close_pull_request":1082981.4285714286,"issues_closed_count":11,"pull_requests_closed_count":14,"pull_request_authors_count":5,"issue_authors_count":8,"avg_comments_per_issue":3.5833333333333335,"avg_comments_per_pull_request":0.2,"merged_pull_requests_count":12,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/issues","maintainers":[{"login":"EBaalhuis","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/EBaalhuis"},{"login":"tjclement","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tjclement"},{"login":"dhdegroot","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dhdegroot"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ecmtool/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ecmtool/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ecmtool/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/ecmtool/related_packages","maintainers":[{"uuid":"tjclement","login":"tjclement","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/tjclement/","role":null,"created_at":"2023-02-24T03:32:45.591Z","updated_at":"2023-02-24T03:32:45.591Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/tjclement/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726136,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":572351,"full_name":"SystemsBioinformatics/ecmtool","default_branch":"master","committers":[{"name":"dhdegroot","email":"d.h.de.groot@vu.nl","login":null,"count":170},{"name":"Tom","email":"tom.clement@bizboard.nl","login":null,"count":98},{"name":"Erik Baalhuis","email":"ebbaalhuis@gmail.com","login":null,"count":90},{"name":"dhdegroot","email":"daanhugodegroot@gmail.com","login":null,"count":81},{"name":"Tom","email":"mr@tomclement.nl","login":null,"count":49},{"name":"Erik Baalhuis","email":"baalhuis@test3.irc.sara.nl.irc.sara.nl","login":null,"count":4},{"name":"Daan de Groot","email":"daan.degroot@unibas.ch","login":null,"count":1}],"total_commits":493,"total_committers":7,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":70.42857142857143,"dds":0.6551724137931034,"past_year_committers":[{"name":"dhdegroot","email":"daanhugodegroot@gmail.com","login":null,"count":62},{"name":"Tom","email":"mr@tomclement.nl","login":null,"count":13},{"name":"Daan de Groot","email":"daan.degroot@unibas.ch","login":null,"count":1}],"past_year_total_commits":76,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":25.333333333333332,"past_year_dds":0.1842105263157895,"last_synced_at":"2023-10-25T14:02:34.975Z","last_synced_commit":"117c17820d293b3a91437719e43a30d9117463e2","created_at":"2023-03-09T05:28:55.116Z","updated_at":"2023-10-25T14:02:34.976Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"SystemsBioinformatics/ecmtool","html_url":"https://github.com/SystemsBioinformatics/ecmtool","last_synced_at":"2025-08-16T02:52:47.890Z","status":"error","issues_count":12,"pull_requests_count":15,"avg_time_to_close_issue":8056836.363636363,"avg_time_to_close_pull_request":1082981.4285714286,"issues_closed_count":11,"pull_requests_closed_count":14,"pull_request_authors_count":5,"issue_authors_count":8,"avg_comments_per_issue":3.5833333333333335,"avg_comments_per_pull_request":0.2,"merged_pull_requests_count":12,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T13:19:50.923Z","updated_at":"2025-09-01T19:14:01.229Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/SystemsBioinformatics%2Fecmtool/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":2},"issue_author_associations_count":{"NONE":11,"COLLABORATOR":1},"pull_request_author_associations_count":{"COLLABORATOR":11,"NONE":3},"issue_authors":{"maxEntropyProd":3,"arichelle":2,"hariszaf":2,"aragorn67":1,"pjetroque":1,"hites77":1,"EBaalhuis":1,"ylwed":1},"pull_request_authors":{"EBaalhuis":5,"dhdegroot":3,"tjclement":3,"dependabot[bot]":2,"onewhaleid":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10021777,"issues_count":30401953,"pull_requests_count":90051100,"authors_count":10269412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"EBaalhuis","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/EBaalhuis"},{"login":"dhdegroot","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dhdegroot"},{"login":"tjclement","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tjclement"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":1,"IssueCommentEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":1,"IssueCommentEvent":1}},"keywords":[],"dependencies":[],"score":9.159678457173955,"created_at":"2025-09-08T11:18:29.450Z","updated_at":"2025-10-07T08:24:32.626Z","avatar_url":"https://github.com/SystemsBioinformatics.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":26,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1016/j.patter.2020.100177","https://doi.org/10.1093/bioinformatics/btad095"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/63339","html_url":"https://science.ecosyste.ms/projects/63339"}