{"id":63565,"name":"genvisr","description":"Genome data visualizations","url":"https://github.com/griffithlab/genvisr","last_synced_at":"2025-09-08T12:58:56.173Z","repository":{"id":26389455,"uuid":"29838964","full_name":"griffithlab/GenVisR","owner":"griffithlab","description":"Genome data visualizations","archived":false,"fork":false,"pushed_at":"2025-07-08T00:58:37.000Z","size":39881,"stargazers_count":220,"open_issues_count":64,"forks_count":64,"subscribers_count":19,"default_branch":"master","last_synced_at":"2025-09-05T18:45:14.395Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc0-1.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/griffithlab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2015-01-26T01:01:43.000Z","updated_at":"2025-08-04T07:12:08.000Z","dependencies_parsed_at":"2023-02-10T06:00:54.732Z","dependency_job_id":"6c4a8c3c-8dbd-4710-98fb-cd2ac8bf5ef9","html_url":"https://github.com/griffithlab/GenVisR","commit_stats":{"total_commits":870,"total_committers":27,"mean_commits":32.22222222222222,"dds":0.2804597701149425,"last_synced_commit":"f65e33deaf0b2f8a9e629e5c2282b0f7ba75b3b8"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/griffithlab/GenVisR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2FGenVisR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2FGenVisR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2FGenVisR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2FGenVisR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/griffithlab","download_url":"https://codeload.github.com/griffithlab/GenVisR/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2FGenVisR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274188923,"owners_count":25237853,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"griffithlab","name":"The Griffith Lab","uuid":"8323084","kind":"organization","description":"Academic Lab of Obi and Malachi Griffith","email":null,"website":"https://griffithlab.org","location":"United States of America","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/8323084?v=4","repositories_count":71,"last_synced_at":"2024-04-14T19:56:20.682Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/griffithlab","funding_links":[],"total_stars":2260,"followers":88,"following":0,"created_at":"2022-11-07T07:07:02.080Z","updated_at":"2024-04-14T19:56:36.283Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/griffithlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/griffithlab/repositories"},"packages":[],"commits":{"id":1402940,"full_name":"griffithlab/GenVisR","default_branch":"master","committers":[{"name":"Zach Skidmore","email":"zskidmor@genome.wustl.edu","login":"zlskidmore","count":685},{"name":"Alex H. Wagner","email":"awagner@genome.wustl.edu","login":"ahwagner","count":51},{"name":"Alan O'Callaghan","email":"alan.ocallaghan@outlook.com","login":"alanocallaghan","count":34},{"name":"z.skidmore","email":"z.skidmore@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":26},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"Alan O'Callaghan","email":"alan.ocallaghan@fiosgenomics.com","login":null,"count":10},{"name":"Katie Campbell","email":"kcampbel@Katies-MacBook-Pro.local","login":null,"count":9},{"name":"Obi Griffith","email":"obigriffith@gmail.com","login":"obigriffith","count":8},{"name":"Jason  kunisaki","email":"jasonkunisaki@ConnectToMe.local","login":null,"count":7},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":6},{"name":"Dan Tenenbaum","email":"dtenenba@fhcrc.org","login":"dtenenba","count":4},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":4},{"name":"Malachi Griffith","email":"malachig@gmail.com","login":"malachig","count":3},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":"hpages","count":3},{"name":"Jason  kunisaki","email":"jasonkunisaki@connecttome.dhcp.wustl.edu","login":null,"count":3},{"name":"Luca Beltrame","email":"luca.beltrame@marionegri.it","login":"lbeltrame","count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"Robert Lesurf","email":"rlesurf@genome.wustl.edu","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"mmoisse","email":"mmoisse","login":"mmoisse","count":1},{"name":"Jim Java","email":"james.java@roswellpark.org","login":null,"count":1},{"name":"Zach Skidmore","email":"zskidmor@zachs-mbp.wusm-wifi.wucon.wustl.edu","login":null,"count":1},{"name":"j.java","email":"j.java@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1},{"name":"baptiste","email":"baptiste","login":"baptiste","count":1},{"name":"Joe Gage","email":"jlgage@ncsu.edu","login":"joegage","count":1},{"name":"Christian Brueffer","email":"christian@brueffer.io","login":"cbrueffer","count":1},{"name":"Avinash Ramu","email":"trackavinash@gmail.com","login":"gatoravi","count":1}],"total_commits":883,"total_committers":27,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":32.7037037037037,"dds":0.22423556058890148,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-05-23T09:27:34.981Z","last_synced_commit":"db32ab3ed043cce65900143ce5a344250f1fb9cf","created_at":"2023-10-25T13:04:04.990Z","updated_at":"2025-05-23T09:27:35.076Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2FGenVisR/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"griffithlab/genvisr","html_url":"https://github.com/griffithlab/genvisr","last_synced_at":"2025-05-26T02:09:05.913Z","status":null,"issues_count":71,"pull_requests_count":125,"avg_time_to_close_issue":6971289.057142857,"avg_time_to_close_pull_request":3877.384,"issues_closed_count":70,"pull_requests_closed_count":125,"pull_request_authors_count":5,"issue_authors_count":7,"avg_comments_per_issue":1.1830985915492958,"avg_comments_per_pull_request":0.016,"merged_pull_requests_count":125,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-12T14:17:13.161Z","updated_at":"2025-09-03T04:05:53.812Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2Fgenvisr","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/griffithlab%2Fgenvisr/issues","issue_labels_count":{"enhancement":16,"bug":11,"wontfix":1,"question":1,"duplicate":1},"pull_request_labels_count":{"bug":1,"enhancement":1},"issue_author_associations_count":{"MEMBER":26,"NONE":12,"CONTRIBUTOR":3},"pull_request_author_associations_count":{"MEMBER":54,"NONE":9,"CONTRIBUTOR":1},"issue_authors":{"zlskidmore":15,"ahwagner":10,"kkrysiak":4,"obigriffith":3,"rlesurf":2,"glscaglione":1,"zpingfeng":1,"tanbiswas":1,"adam-cornwell":1,"malachig":1,"lfaino":1,"eaferrante":1},"pull_request_authors":{"zlskidmore":41,"ahwagner":13,"kcampbel":6,"rlesurf":2,"gatoravi":1,"joegage":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10078862,"issues_count":31308690,"pull_requests_count":96064166,"authors_count":10692493,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"zpingfeng":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"zlskidmore","count":56,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zlskidmore"},{"login":"ahwagner","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ahwagner"},{"login":"malachig","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/malachig"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":11,"IssueCommentEvent":1,"ForkEvent":2,"CreateEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":11,"IssueCommentEvent":1,"ForkEvent":2,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-07-16T00:16:13.664Z","updated_at":"2022-07-16T00:16:13.664Z","repository_link":"https://github.com/griffithlab/GenVisR/blob/master/DESCRIPTION","dependencies":[{"id":227171194,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.3.0","direct":true,"kind":"depends","optional":false},{"id":227171195,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":227171196,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171197,"package_name":"biomaRt","ecosystem":"cran","requirements":"\u003e= 2.45.8","direct":true,"kind":"imports","optional":false},{"id":227171198,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171199,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171200,"package_name":"DBI","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171201,"package_name":"FField","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171202,"package_name":"GenomicFeatures","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171203,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"\u003e= 1.25.4","direct":true,"kind":"imports","optional":false},{"id":227171204,"package_name":"ggplot2","ecosystem":"cran","requirements":"\u003e= 2.1.0","direct":true,"kind":"imports","optional":false},{"id":227171205,"package_name":"gridExtra","ecosystem":"cran","requirements":"\u003e= 2.0.0","direct":true,"kind":"imports","optional":false},{"id":227171206,"package_name":"gtable","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171207,"package_name":"gtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171208,"package_name":"IRanges","ecosystem":"cran","requirements":"\u003e= 2.7.5","direct":true,"kind":"imports","optional":false},{"id":227171209,"package_name":"plyr","ecosystem":"cran","requirements":"\u003e= 1.8.3","direct":true,"kind":"imports","optional":false},{"id":227171210,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171211,"package_name":"Rsamtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171212,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171213,"package_name":"viridis","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171214,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171215,"package_name":"BSgenome","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171216,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171217,"package_name":"VariantAnnotation","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":227171218,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171219,"package_name":"BSgenome.Hsapiens.UCSC.hg19","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171220,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171221,"package_name":"RMySQL","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171222,"package_name":"roxygen2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171223,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171224,"package_name":"TxDb.Hsapiens.UCSC.hg19.knownGene","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171225,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171226,"package_name":"vdiffr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171227,"package_name":"formatR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171228,"package_name":"TxDb.Hsapiens.UCSC.hg38.knownGene","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":227171229,"package_name":"BSgenome.Hsapiens.UCSC.hg38","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":8.944811104165534,"created_at":"2025-09-08T11:18:30.335Z","updated_at":"2025-10-07T08:24:35.459Z","avatar_url":"https://github.com/griffithlab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-package","genomics","gene","single-cell-rna-seq","human-cell-atlas","proteomics","metagenomics","copy-number-variation","tumor-heterogeneity","illumina"],"project_url":"https://science.ecosyste.ms/api/v1/projects/63565","html_url":"https://science.ecosyste.ms/projects/63565"}