{"id":63992,"name":"splatter","description":"Simple simulation of single-cell RNA sequencing data","url":"https://github.com/oshlack/splatter","last_synced_at":"2025-09-08T13:05:04.721Z","repository":{"id":12105180,"uuid":"70012983","full_name":"Oshlack/splatter","owner":"Oshlack","description":"Simple simulation of single-cell RNA sequencing data","archived":false,"fork":false,"pushed_at":"2025-07-09T19:24:45.000Z","size":59986,"stargazers_count":228,"open_issues_count":8,"forks_count":59,"subscribers_count":5,"default_branch":"devel","last_synced_at":"2025-07-10T03:37:30.242Z","etag":null,"topics":["bioconductor","bioinformatics","scrna-seq","simulation"],"latest_commit_sha":null,"homepage":"http://oshlacklab.com/splatter/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Oshlack.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2016-10-04T22:53:49.000Z","updated_at":"2025-07-09T19:24:42.000Z","dependencies_parsed_at":"2023-02-15T11:30:54.738Z","dependency_job_id":"cf50e856-6a2f-49dc-952e-b9a2370e8740","html_url":"https://github.com/Oshlack/splatter","commit_stats":{"total_commits":708,"total_committers":26,"mean_commits":27.23076923076923,"dds":0.2344632768361582,"last_synced_commit":"3ee127b0e6e9a45e16ba29e7f8e97ea08a9d936e"},"previous_names":[],"tags_count":135,"template":false,"template_full_name":null,"purl":"pkg:github/Oshlack/splatter","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Oshlack","download_url":"https://codeload.github.com/Oshlack/splatter/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274188965,"owners_count":25237856,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Oshlack","name":"Oshlack","uuid":"12024898","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/12024898?v=4","repositories_count":38,"last_synced_at":"2024-03-26T15:14:21.184Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Oshlack","funding_links":[],"total_stars":723,"followers":27,"following":0,"created_at":"2022-11-03T23:39:05.139Z","updated_at":"2024-03-26T15:14:21.372Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Oshlack","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Oshlack/repositories"},"packages":[],"commits":{"id":1403493,"full_name":"Oshlack/splatter","default_branch":"devel","committers":[{"name":"Luke Zappia","email":"lazappi","login":"lazappi","count":542},{"name":"cazodi","email":"cazodi@svi.edu.au","login":null,"count":83},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":null,"count":15},{"name":"Luke Zappia","email":"luke.zappia@mcri.edu.au","login":null,"count":13},{"name":"l.zappia","email":"l.zappia@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":9},{"name":"hpages@fhcrc.org","email":"hpages@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":5},{"name":"Hervé Pagès","email":"hpages@fredhutch.org","login":null,"count":4},{"name":"Robrecht Cannoodt","email":"brechtus@gmail.com","login":null,"count":4},{"name":"Christina Azodi","email":"cbazodi@gmail.com","login":null,"count":4},{"name":"Robrecht Cannoodt","email":"robrecht.cannoodt@ugent.be","login":null,"count":3},{"name":"evanbiederstedt","email":"evan.biederstedt@gmail.com","login":null,"count":3},{"name":"Wenjie Wang","email":"wenjie.wang@lilly.com","login":null,"count":3},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"vobencha","email":"vobencha@gmail.com","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"Herve Pages","email":"hpages@fhcrc.org","login":null,"count":2},{"name":"vobencha","email":"valerie.obenchain@roswellpark.org","login":null,"count":2},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":null,"count":2},{"name":"Wouter Saelens","email":"wouter.saelens@gmail.com","login":null,"count":1},{"name":"Allen Zhang","email":"alzhang@bccrc.ca","login":null,"count":1},{"name":"Jeffrey Pullin","email":"jeffrey.pullin@gmail.com","login":null,"count":1},{"name":"Dayne","email":"dayne.filer@gmail.com","login":null,"count":1},{"name":"Christina Azodi","email":"cazodi@mc01.svi.edu.au","login":null,"count":1},{"name":"lshep","email":"lori.shepherd@roswellpark.org","login":null,"count":1},{"name":"mtmorgan@fhcrc.org","email":"mtmorgan@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358","login":null,"count":1},{"name":"Martin Morgan","email":"mtmorgan@fhcrc.org","login":null,"count":1}],"total_commits":708,"total_committers":26,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":27.23076923076923,"dds":0.2344632768361582,"past_year_committers":[{"name":"Luke Zappia","email":"lazappi","login":"lazappi","count":20},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":null,"count":2},{"name":"J Wokaty","email":"jwokaty","login":"jwokaty","count":2},{"name":"cazodi","email":"cazodi@svi.edu.au","login":null,"count":2}],"past_year_total_commits":26,"past_year_total_committers":4,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":6.5,"past_year_dds":0.23076923076923073,"last_synced_at":"2023-10-25T13:17:39.385Z","last_synced_commit":"3ee127b0e6e9a45e16ba29e7f8e97ea08a9d936e","created_at":"2023-10-25T13:16:13.644Z","updated_at":"2023-10-25T13:17:39.386Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:13.651Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Oshlack/splatter","html_url":"https://github.com/Oshlack/splatter","last_synced_at":"2025-08-31T19:12:42.888Z","status":null,"issues_count":0,"pull_requests_count":2,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":24971.0,"issues_closed_count":0,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":24971.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":1,"past_year_merged_pull_requests_count":2,"created_at":"2025-08-29T21:26:25.692Z","updated_at":"2025-09-03T02:34:47.679Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter/issues","issue_labels_count":{"question":3},"pull_request_labels_count":{"dependencies":5},"issue_author_associations_count":{"NONE":4},"pull_request_author_associations_count":{"CONTRIBUTOR":4,"MEMBER":1,"NONE":1,"COLLABORATOR":1},"issue_authors":{"kuang-da":1,"emine2441":1,"vali301s":1,"HelenaLC":1},"pull_request_authors":{"dependabot[bot]":5,"lazappi":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10120212,"issues_count":31691385,"pull_requests_count":98711414,"authors_count":10709926,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"dependencies":5},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":4,"MEMBER":1,"NONE":1,"COLLABORATOR":1},"past_year_issue_authors":{"HelenaLC":1},"past_year_pull_request_authors":{"dependabot[bot]":5,"lazappi":2},"maintainers":[{"login":"lazappi","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lazappi"}],"active_maintainers":[{"login":"lazappi","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lazappi"}]},"events":{"total":{"CreateEvent":10,"ReleaseEvent":2,"IssuesEvent":2,"WatchEvent":10,"DeleteEvent":7,"IssueCommentEvent":2,"PushEvent":20,"PullRequestEvent":12,"ForkEvent":2},"last_year":{"CreateEvent":10,"ReleaseEvent":2,"IssuesEvent":2,"WatchEvent":10,"DeleteEvent":7,"IssueCommentEvent":2,"PushEvent":20,"PullRequestEvent":12,"ForkEvent":2}},"keywords":["bioconductor","bioinformatics","scrna-seq","simulation"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-07T06:16:44.412Z","updated_at":"2022-08-07T06:16:44.412Z","repository_link":"https://github.com/Oshlack/splatter/blob/devel/DESCRIPTION","dependencies":[{"id":588623475,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0","direct":true,"kind":"depends","optional":false},{"id":588623476,"package_name":"SingleCellExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":588623477,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623478,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623479,"package_name":"checkmate","ecosystem":"cran","requirements":"\u003e= 2.0.0","direct":true,"kind":"imports","optional":false},{"id":588623480,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623481,"package_name":"fitdistrplus","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623482,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623483,"package_name":"locfit","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623484,"package_name":"matrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623485,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623486,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623487,"package_name":"scater","ecosystem":"cran","requirements":"\u003e= 1.15.16","direct":true,"kind":"imports","optional":false},{"id":588623488,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623489,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623490,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623491,"package_name":"crayon","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623492,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623493,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":588623494,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623495,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623496,"package_name":"cowplot","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623497,"package_name":"magick","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623498,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623499,"package_name":"limSolve","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623500,"package_name":"lme4","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623501,"package_name":"progress","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623502,"package_name":"pscl","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623503,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623504,"package_name":"preprocessCore","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623505,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623506,"package_name":"scDD","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623507,"package_name":"scran","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623508,"package_name":"mfa","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623509,"package_name":"phenopath","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623510,"package_name":"BASiCS","ecosystem":"cran","requirements":"\u003e= 1.7.10","direct":true,"kind":"suggests","optional":false},{"id":588623511,"package_name":"zinbwave","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623512,"package_name":"SparseDC","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623513,"package_name":"BiocManager","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623514,"package_name":"spelling","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623515,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623516,"package_name":"scuttle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623517,"package_name":"BiocSingular","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623518,"package_name":"VariantAnnotation","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623519,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623520,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623521,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":588623522,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/check.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T16:47:11.183Z","updated_at":"2023-01-13T16:47:11.183Z","repository_link":"https://github.com/Oshlack/splatter/blob/devel/.github/workflows/check.yml","dependencies":[{"id":6890876617,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":6890876618,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890876619,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890876620,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890876621,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6890876622,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"4.1.4","direct":true,"kind":"composite","optional":false}]}],"score":8.721928343047093,"created_at":"2025-09-08T11:18:32.193Z","updated_at":"2025-10-07T08:24:40.530Z","avatar_url":"https://github.com/Oshlack.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["http://dx.doi.org/10.1186/s13059-017-1305-0","http://dx.doi.org/10.1186/s13059-021-02546-1"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioconductor-packages","gene","genomics","core-package","mass-spectrometry","metabolomics","single-cell-rna-seq","feature-detection","core-services","human-cell-atlas"],"project_url":"https://science.ecosyste.ms/api/v1/projects/63992","html_url":"https://science.ecosyste.ms/projects/63992"}