{"id":64942,"name":"methylnet","description":"Modular framework for deep learning predictions on methylation data.","url":"https://github.com/christensen-lab-dartmouth/methylnet","last_synced_at":"2025-09-08T13:17:51.509Z","repository":{"id":57441196,"uuid":"160378082","full_name":"Christensen-Lab-Dartmouth/MethylNet","owner":"Christensen-Lab-Dartmouth","description":"Modular framework for deep learning predictions on methylation data.","archived":false,"fork":false,"pushed_at":"2020-06-02T16:23:25.000Z","size":147982,"stargazers_count":54,"open_issues_count":6,"forks_count":12,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-08-30T01:19:33.086Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://christensen-lab-dartmouth.github.io/MethylNet/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Christensen-Lab-Dartmouth.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-12-04T15:24:18.000Z","updated_at":"2025-07-17T14:27:31.000Z","dependencies_parsed_at":"2022-09-02T06:43:06.671Z","dependency_job_id":null,"html_url":"https://github.com/Christensen-Lab-Dartmouth/MethylNet","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Christensen-Lab-Dartmouth/MethylNet","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Christensen-Lab-Dartmouth","download_url":"https://codeload.github.com/Christensen-Lab-Dartmouth/MethylNet/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/sbom","scorecard":{"id":29683,"data":{"date":"2025-08-11","repo":{"name":"github.com/Christensen-Lab-Dartmouth/MethylNet","commit":"674506b6fe346813791e424ea049bbb2431c982c"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":1.6,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":0,"reason":"Found 0/30 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"SAST","score":0,"reason":"no SAST tool detected","details":["Warn: no pull requests merged into dev branch"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Binary-Artifacts","score":0,"reason":"binaries present in source code","details":["Warn: binary detected: dist/methylnet-0.1-py3-none-any.whl:1","Warn: binary detected: dist/methylnet-0.1.1-py3-none-any.whl:1","Warn: binary detected: dist/methylnet-0.1.2-py3-none-any.whl:1","Warn: binary detected: dist/methylnet-0.1.3-py3-none-any.whl:1","Warn: binary detected: methylnet/__pycache__/__init__.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/datasets.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/embedding.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/hyperparameter_scans.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/interpretation_classes.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/model_interpretability.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/models.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/plotter.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/predictions.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/schedulers.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/test_pipeline.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/torque_job_runner.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/torque_jobs.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/visualizations.cpython-36.pyc:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: containerImage not pinned by hash: Dockerfile:1: pin your Docker image by updating joshualevy44/methylnet:0.1 to joshualevy44/methylnet:0.1@sha256:5814f214b2ee30631cc2548ff846c1003d11fbfaa283cb11f8d0902434016c8e","Warn: containerImage not pinned by hash: docker/Dockerfile:1: pin your Docker image by updating joshualevy44/pymethylprocess:latest to joshualevy44/pymethylprocess:latest@sha256:74d33367d42c224e5b330844d3d0df5a66c4ae2cb24c34e92b16e294e6c5d5ab","Warn: pipCommand not pinned by hash: Dockerfile:3","Warn: pipCommand not pinned by hash: docker/Dockerfile:5","Warn: pipCommand not pinned by hash: docker/Dockerfile:11","Warn: pipCommand not pinned by hash: docker/Dockerfile:13","Warn: pipCommand not pinned by hash: docker/Dockerfile:17","Info:   0 out of   2 containerImage dependencies pinned","Info:   0 out of   5 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-14T18:45:47.923Z","repository_id":57441196,"created_at":"2025-08-14T18:45:47.923Z","updated_at":"2025-08-14T18:45:47.923Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274190455,"owners_count":25238164,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Christensen-Lab-Dartmouth","name":"Christensen-Lab-Dartmouth","uuid":"15944429","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/15944429?v=4","repositories_count":4,"last_synced_at":"2023-02-27T21:37:40.165Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Christensen-Lab-Dartmouth","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-27T21:37:39.390Z","updated_at":"2023-02-27T21:37:40.166Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Christensen-Lab-Dartmouth","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Christensen-Lab-Dartmouth/repositories"},"packages":[{"id":2800361,"name":"methylnet","ecosystem":"pypi","description":"A modular deep learning approach for Methylation Predictions.","homepage":"https://github.com/Christensen-Lab-Dartmouth/MethylNet","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/Christensen-Lab-Dartmouth/MethylNet","keywords_array":[],"namespace":null,"versions_count":4,"first_release_published_at":"2019-07-04T03:09:24.000Z","latest_release_published_at":"2019-10-14T01:28:04.000Z","latest_release_number":"0.1.3","last_synced_at":"2025-08-30T00:53:06.046Z","created_at":"2022-04-10T11:35:24.484Z","updated_at":"2025-08-30T01:14:49.507Z","registry_url":"https://pypi.org/project/methylnet/","install_command":"pip install methylnet --index-url https://pypi.org/simple","documentation_url":"https://methylnet.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":[],"normalized_name":"methylnet","project_status":null},"repo_metadata":{"id":57441196,"uuid":"160378082","full_name":"Christensen-Lab-Dartmouth/MethylNet","owner":"Christensen-Lab-Dartmouth","description":"Modular framework for deep learning predictions on methylation data.","archived":false,"fork":false,"pushed_at":"2020-06-02T16:23:25.000Z","size":147982,"stargazers_count":54,"open_issues_count":6,"forks_count":12,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-07-29T20:38:12.050Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://christensen-lab-dartmouth.github.io/MethylNet/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Christensen-Lab-Dartmouth.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-12-04T15:24:18.000Z","updated_at":"2025-07-17T14:27:31.000Z","dependencies_parsed_at":"2022-09-02T06:43:06.671Z","dependency_job_id":null,"html_url":"https://github.com/Christensen-Lab-Dartmouth/MethylNet","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Christensen-Lab-Dartmouth/MethylNet","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Christensen-Lab-Dartmouth","download_url":"https://codeload.github.com/Christensen-Lab-Dartmouth/MethylNet/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/sbom","scorecard":{"id":29683,"data":{"date":"2025-08-11","repo":{"name":"github.com/Christensen-Lab-Dartmouth/MethylNet","commit":"674506b6fe346813791e424ea049bbb2431c982c"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":1.6,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":0,"reason":"Found 0/30 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"SAST","score":0,"reason":"no SAST tool detected","details":["Warn: no pull requests merged into dev branch"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Binary-Artifacts","score":0,"reason":"binaries present in source code","details":["Warn: binary detected: dist/methylnet-0.1-py3-none-any.whl:1","Warn: binary detected: dist/methylnet-0.1.1-py3-none-any.whl:1","Warn: binary detected: dist/methylnet-0.1.2-py3-none-any.whl:1","Warn: binary detected: dist/methylnet-0.1.3-py3-none-any.whl:1","Warn: binary detected: methylnet/__pycache__/__init__.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/datasets.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/embedding.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/hyperparameter_scans.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/interpretation_classes.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/model_interpretability.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/models.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/plotter.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/predictions.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/schedulers.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/test_pipeline.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/torque_job_runner.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/torque_jobs.cpython-36.pyc:1","Warn: binary detected: methylnet/__pycache__/visualizations.cpython-36.pyc:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: containerImage not pinned by hash: Dockerfile:1: pin your Docker image by updating joshualevy44/methylnet:0.1 to joshualevy44/methylnet:0.1@sha256:5814f214b2ee30631cc2548ff846c1003d11fbfaa283cb11f8d0902434016c8e","Warn: containerImage not pinned by hash: docker/Dockerfile:1: pin your Docker image by updating joshualevy44/pymethylprocess:latest to joshualevy44/pymethylprocess:latest@sha256:74d33367d42c224e5b330844d3d0df5a66c4ae2cb24c34e92b16e294e6c5d5ab","Warn: pipCommand not pinned by hash: Dockerfile:3","Warn: pipCommand not pinned by hash: docker/Dockerfile:5","Warn: pipCommand not pinned by hash: docker/Dockerfile:11","Warn: pipCommand not pinned by hash: docker/Dockerfile:13","Warn: pipCommand not pinned by hash: docker/Dockerfile:17","Info:   0 out of   2 containerImage dependencies pinned","Info:   0 out of   5 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-14T18:45:47.923Z","repository_id":57441196,"created_at":"2025-08-14T18:45:47.923Z","updated_at":"2025-08-14T18:45:47.923Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272789369,"owners_count":24993267,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-29T02:00:10.610Z","response_time":87,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"Christensen-Lab-Dartmouth","name":"Christensen-Lab-Dartmouth","uuid":"15944429","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/15944429?v=4","repositories_count":4,"last_synced_at":"2023-02-27T21:37:40.165Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Christensen-Lab-Dartmouth","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-27T21:37:39.390Z","updated_at":"2023-02-27T21:37:40.166Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Christensen-Lab-Dartmouth","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Christensen-Lab-Dartmouth/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-30T01:14:49.506Z","dependent_packages_count":0,"downloads":20,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":29.409270964214805,"dependent_repos_count":21.71838761843193,"dependent_packages_count":10.002282794063202,"stargazers_count":9.985338256403958,"forks_count":10.909910514755953,"docker_downloads_count":null,"average":16.40503802957397},"purl":"pkg:pypi/methylnet","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/methylnet","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/methylnet","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/methylnet/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-29T19:54:17.602Z","issues_count":15,"pull_requests_count":1,"avg_time_to_close_issue":9871400.555555556,"avg_time_to_close_pull_request":186.0,"issues_closed_count":9,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":6,"avg_comments_per_issue":1.2666666666666666,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/issues","maintainers":[{"login":"jlevy44","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jlevy44"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/methylnet/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/methylnet/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/methylnet/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/methylnet/related_packages","maintainers":[{"uuid":"jlevy44","login":"jlevy44","name":null,"email":null,"url":null,"packages_count":13,"html_url":"https://pypi.org/user/jlevy44/","role":null,"created_at":"2023-02-24T16:23:23.770Z","updated_at":"2023-02-24T16:23:23.770Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/jlevy44/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726140,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":610602,"full_name":"Christensen-Lab-Dartmouth/MethylNet","default_branch":"master","committers":[{"name":"jlevy44","email":"joshualevy44@berkeley.edu","login":null,"count":154}],"total_commits":154,"total_committers":1,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":154.0,"dds":0.0,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:20:36.632Z","last_synced_commit":"674506b6fe346813791e424ea049bbb2431c982c","created_at":"2023-03-09T07:22:18.050Z","updated_at":"2023-10-25T14:20:36.632Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Christensen-Lab-Dartmouth/MethylNet","html_url":"https://github.com/Christensen-Lab-Dartmouth/MethylNet","last_synced_at":"2025-08-30T01:14:49.484Z","status":"error","issues_count":15,"pull_requests_count":1,"avg_time_to_close_issue":9871400.555555556,"avg_time_to_close_pull_request":186.0,"issues_closed_count":9,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":6,"avg_comments_per_issue":1.2666666666666666,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T17:40:02.826Z","updated_at":"2025-08-30T01:14:49.485Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Christensen-Lab-Dartmouth%2FMethylNet/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"MEMBER":9,"NONE":6},"pull_request_author_associations_count":{"MEMBER":1},"issue_authors":{"jlevy44":9,"AlexanderTitus":2,"bioinfo-dirty-jobs":1,"rcedgar":1,"ofsolomon":1,"GillianGrayson":1},"pull_request_authors":{"jlevy44":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10166699,"issues_count":32013288,"pull_requests_count":100268859,"authors_count":10729412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"jlevy44","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jlevy44"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":2,"ForkEvent":1},"last_year":{"WatchEvent":2,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"methylnet.egg-info/requires.txt","sha":null,"kind":"manifest","created_at":"2022-09-02T06:43:06.416Z","updated_at":"2022-09-02T06:43:06.416Z","repository_link":"https://github.com/Christensen-Lab-Dartmouth/MethylNet/blob/master/methylnet.egg-info/requires.txt","dependencies":[{"id":3584204417,"package_name":"pymethylprocess","ecosystem":"pypi","requirements":"\u003e=0.1.5","direct":true,"kind":"runtime","optional":false},{"id":3584204418,"package_name":"ruamel.yaml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204419,"package_name":"statsmodels","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204420,"package_name":"mlxtend","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204421,"package_name":"dask","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-09-02T06:43:06.519Z","updated_at":"2022-09-02T06:43:06.519Z","repository_link":"https://github.com/Christensen-Lab-Dartmouth/MethylNet/blob/master/setup.py","dependencies":[{"id":3584204528,"package_name":"pymethylprocess","ecosystem":"pypi","requirements":"\u003e=0.1.5","direct":true,"kind":"runtime","optional":false},{"id":3584204529,"package_name":"ruamel.yaml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204530,"package_name":"modin","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204531,"package_name":"torch","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204532,"package_name":"statsmodels","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204533,"package_name":"mlxtend","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204534,"package_name":"dask","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204535,"package_name":"networkx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3584204536,"package_name":"submit_hpc","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":7.1853870155804165,"created_at":"2025-09-08T11:18:35.936Z","updated_at":"2025-10-07T08:24:52.431Z","avatar_url":"https://github.com/Christensen-Lab-Dartmouth.png","language":"HTML","category":null,"sub_category":null,"monthly_downloads":20,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/64942","html_url":"https://science.ecosyste.ms/projects/64942"}