{"id":65070,"name":"genotype","description":"Simple genotype comparison of VCF files","url":"https://github.com/clinical-genomics/genotype","last_synced_at":"2025-09-08T13:19:34.093Z","repository":{"id":20071579,"uuid":"23340405","full_name":"Clinical-Genomics/genotype","owner":"Clinical-Genomics","description":"Simple genotype comparison of VCF files","archived":false,"fork":false,"pushed_at":"2025-07-03T12:24:58.000Z","size":866,"stargazers_count":8,"open_issues_count":13,"forks_count":2,"subscribers_count":8,"default_branch":"master","last_synced_at":"2025-08-15T14:58:21.785Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://taboo.readthedocs.org/en/latest/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Clinical-Genomics.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2014-08-26T05:52:08.000Z","updated_at":"2023-07-21T21:39:34.000Z","dependencies_parsed_at":"2025-06-06T18:50:51.882Z","dependency_job_id":null,"html_url":"https://github.com/Clinical-Genomics/genotype","commit_stats":{"total_commits":456,"total_committers":14,"mean_commits":32.57142857142857,"dds":"0.49122807017543857","last_synced_commit":"72c405b6dbaa198d9b724135dcac6307bf47ca87"},"previous_names":[],"tags_count":35,"template":false,"template_full_name":null,"purl":"pkg:github/Clinical-Genomics/genotype","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Clinical-Genomics","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/sbom","scorecard":{"id":30753,"data":{"date":"2025-08-11","repo":{"name":"github.com/Clinical-Genomics/genotype","commit":"9370769b31caa50277e173f654d580455abddb24"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3,"checks":[{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":2,"reason":"Found 6/22 approved changesets -- score normalized to 2","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/black.yml:1","Warn: no topLevel permission defined: .github/workflows/build_and_publish.yml:1","Warn: no topLevel permission defined: .github/workflows/build_dockerfile_on_push.yml:1","Warn: no topLevel permission defined: .github/workflows/build_dockerfile_on_release.yml:1","Warn: no topLevel permission defined: .github/workflows/build_docs.yml:1","Warn: no topLevel permission defined: .github/workflows/bumpversion_on_merge_master.yml:1","Warn: no topLevel permission defined: .github/workflows/deploy_prod.yml:1","Warn: no topLevel permission defined: .github/workflows/deploy_stage.yml:1","Warn: no topLevel permission defined: .github/workflows/installations.yml:1","Warn: no topLevel permission defined: .github/workflows/tests_and_coverage.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/black.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/black.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/black.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/black.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/black.yml:18: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/black.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_and_publish.yml:14: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_and_publish.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_and_publish.yml:17: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_and_publish.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_and_publish.yml:37: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_and_publish.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_push.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_push.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_push.yml:18: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_push.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_push.yml:25: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_push.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_push.yml:29: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_push.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_release.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_release.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_release.yml:18: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_release.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_release.yml:25: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_release.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_dockerfile_on_release.yml:29: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_dockerfile_on_release.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_docs.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_docs.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/build_docs.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/build_docs.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/bumpversion_on_merge_master.yml:14: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/bumpversion_on_merge_master.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/installations.yml:18: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/installations.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/installations.yml:22: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/installations.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/tests_and_coverage.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/tests_and_coverage.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/tests_and_coverage.yml:18: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/tests_and_coverage.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/tests_and_coverage.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/tests_and_coverage.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/tests_and_coverage.yml:42: update your workflow using https://app.stepsecurity.io/secureworkflow/Clinical-Genomics/genotype/tests_and_coverage.yml/master?enable=pin","Warn: containerImage not pinned by hash: Dockerfile:1: pin your Docker image by updating python:3.7-slim to python:3.7-slim@sha256:b53f496ca43e5af6994f8e316cf03af31050bf7944e0e4a308ad86c001cf028b","Warn: pipCommand not pinned by hash: Dockerfile:15","Warn: pipCommand not pinned by hash: Dockerfile:16","Warn: pipCommand not pinned by hash: .github/workflows/build_and_publish.yml:23","Warn: pipCommand not pinned by hash: .github/workflows/installations.yml:30","Warn: pipCommand not pinned by hash: .github/workflows/installations.yml:39","Warn: pipCommand not pinned by hash: .github/workflows/installations.yml:44","Info:   0 out of  11 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   6 pipCommand dependencies pinned","Info:   0 out of   1 containerImage dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Vulnerabilities","score":0,"reason":"35 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2024-230 / GHSA-248v-346w-9cwc","Warn: Project is vulnerable to: PYSEC-2023-62 / GHSA-m2qf-hxjv-5gpq","Warn: Project is vulnerable to: GHSA-cg8c-gc2j-2wf7","Warn: Project is vulnerable to: GHSA-hc5x-x2vx-497g","Warn: Project is vulnerable to: GHSA-w3h3-4rj7-4ph4","Warn: Project is vulnerable to: PYSEC-2024-60 / GHSA-jjg7-2v4v-x38h","Warn: Project is vulnerable to: GHSA-cpwx-vrp4-4pq7","Warn: Project is vulnerable to: PYSEC-2021-66 / GHSA-g3rq-g295-4j3m","Warn: Project is vulnerable to: GHSA-h5c8-rqwp-cp95","Warn: Project is vulnerable to: GHSA-h75v-3vvj-5mfj","Warn: Project is vulnerable to: GHSA-q2x7-8rv6-6q7h","Warn: Project is vulnerable to: PYSEC-2022-42969","Warn: Project is vulnerable to: GHSA-v9hf-5j83-6xpp","Warn: Project is vulnerable to: GHSA-9hjg-9r4m-mvj7","Warn: Project is vulnerable to: GHSA-9wx4-h78v-vm56","Warn: Project is vulnerable to: PYSEC-2025-49 / GHSA-5rjg-fvgr-3xxf","Warn: Project is vulnerable to: GHSA-cx63-2mw6-8hw5","Warn: Project is vulnerable to: GHSA-34jh-p97f-mpxf","Warn: Project is vulnerable to: GHSA-48p4-8xcf-vxj5","Warn: Project is vulnerable to: GHSA-pq67-6m6q-mj2v","Warn: Project is vulnerable to: PYSEC-2024-187 / GHSA-rqc4-2hc7-8c8v","Warn: Project is vulnerable to: GHSA-2g68-c3qc-8985","Warn: Project is vulnerable to: GHSA-f9vj-2wh5-fj8j","Warn: Project is vulnerable to: PYSEC-2023-221 / GHSA-hrfv-mqp8-q5rw","Warn: Project is vulnerable to: PYSEC-2023-57 / GHSA-px8h-6qxv-m22q","Warn: Project is vulnerable to: GHSA-q34m-jh98-gwm2","Warn: Project is vulnerable to: PYSEC-2023-58 / GHSA-xg9f-g7g7-2323","Warn: Project is vulnerable to: PYSEC-2022-203","Warn: Project is vulnerable to: GHSA-jfmj-5v4g-7637","Warn: Project is vulnerable to: PYSEC-2018-55 / GHSA-32pc-xphx-q4f6","Warn: Project is vulnerable to: GHSA-6p56-wp2h-9hxr","Warn: Project is vulnerable to: GHSA-fpfv-jqm9-f5jm","Warn: Project is vulnerable to: PYSEC-2021-142 / GHSA-8q59-q68h-6hv4","Warn: Project is vulnerable to: PYSEC-2018-49 / GHSA-rprw-h62v-c2w7","Warn: Project is vulnerable to: PYSEC-2022-43017 / GHSA-qwmp-2cf2-g9g6"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 18 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-14T19:03:15.714Z","repository_id":20071579,"created_at":"2025-08-14T19:03:15.715Z","updated_at":"2025-08-14T19:03:15.715Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274190648,"owners_count":25238195,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Clinical-Genomics","name":"Clinical Genomics","uuid":"6412433","kind":"organization","description":"","email":null,"website":"https://clinical-genomics.github.io","location":"Stockholm, Sweden","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6412433?v=4","repositories_count":67,"last_synced_at":"2023-03-12T06:27:20.515Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Clinical-Genomics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T03:10:33.101Z","updated_at":"2023-03-12T06:27:20.700Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Clinical-Genomics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Clinical-Genomics/repositories"},"packages":[{"id":2745640,"name":"genotype","ecosystem":"pypi","description":"genotype provides an automated pipipeline for comparinggenotypes from different assays.","homepage":"https://github.com/Clinical-Genomics/genotype","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/Clinical-Genomics/genotype","keywords_array":["genotype","development"],"namespace":null,"versions_count":9,"first_release_published_at":"2017-01-02T09:56:28.000Z","latest_release_published_at":"2020-09-23T19:26:19.000Z","latest_release_number":"3.0.0","last_synced_at":"2025-08-13T02:05:51.405Z","created_at":"2022-04-10T11:07:04.012Z","updated_at":"2025-08-13T02:05:51.406Z","registry_url":"https://pypi.org/project/genotype/","install_command":"pip install genotype --index-url https://pypi.org/simple","documentation_url":"https://genotype.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 3 - Alpha","Environment :: Console","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Programming Language :: Python :: 3.6","Topic :: Software Development"],"normalized_name":"genotype"},"repo_metadata":{"id":20071579,"uuid":"23340405","full_name":"Clinical-Genomics/genotype","owner":"Clinical-Genomics","description":"Simple genotype comparison of VCF files","archived":false,"fork":false,"pushed_at":"2024-02-27T08:38:22.000Z","size":859,"stargazers_count":8,"open_issues_count":12,"forks_count":2,"subscribers_count":8,"default_branch":"master","last_synced_at":"2025-06-06T18:52:49.956Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://taboo.readthedocs.org/en/latest/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Clinical-Genomics.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2014-08-26T05:52:08.000Z","updated_at":"2023-07-21T21:39:34.000Z","dependencies_parsed_at":"2025-06-06T18:50:51.882Z","dependency_job_id":null,"html_url":"https://github.com/Clinical-Genomics/genotype","commit_stats":{"total_commits":456,"total_committers":14,"mean_commits":32.57142857142857,"dds":"0.49122807017543857","last_synced_commit":"72c405b6dbaa198d9b724135dcac6307bf47ca87"},"previous_names":[],"tags_count":35,"template":false,"template_full_name":null,"purl":"pkg:github/Clinical-Genomics/genotype","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Clinical-Genomics","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":264555346,"owners_count":23627321,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"Clinical-Genomics","name":"Clinical Genomics","uuid":"6412433","kind":"organization","description":"","email":null,"website":"https://clinical-genomics.github.io","location":"Stockholm, Sweden","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6412433?v=4","repositories_count":67,"last_synced_at":"2023-03-12T06:27:20.515Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Clinical-Genomics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T03:10:33.101Z","updated_at":"2023-03-12T06:27:20.700Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Clinical-Genomics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Clinical-Genomics/repositories"},"tags":[{"name":"4.1.7","sha":"1c71e2ad1001c3a76bb9330f6d22af0f5a9150a4","kind":"tag","published_at":"2024-02-25T14:13:59.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.7","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.7/manifests"},{"name":"4.1.6","sha":"64606755212f92b050fe9756eadcfa8bcaec778a","kind":"tag","published_at":"2024-02-25T13:59:29.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.6","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.6/manifests"},{"name":"4.1.5","sha":"72c405b6dbaa198d9b724135dcac6307bf47ca87","kind":"tag","published_at":"2023-01-30T12:26:05.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.5","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.5/manifests"},{"name":"4.1.4","sha":"b1df4c5468dacf051f66f57606bbeff867d91d8d","kind":"tag","published_at":"2023-01-12T13:55:14.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.4","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.4/manifests"},{"name":"4.1.3","sha":"c2e876164ea923e627cbd9e6b28f314db336c776","kind":"tag","published_at":"2022-12-14T12:36:33.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.3","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.3/manifests"},{"name":"4.1.2","sha":"9141f76383510210e52e190da05c35596e442539","kind":"tag","published_at":"2022-12-01T14:56:58.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.2","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.2/manifests"},{"name":"4.1.1","sha":"c22b09caa668063db20030a390c32658faa4ad87","kind":"tag","published_at":"2022-10-27T09:11:56.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.1/manifests"},{"name":"4.1.0","sha":"38fc5955df107ed0d460f3b060836fdd843eecc3","kind":"tag","published_at":"2022-01-18T12:15:00.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.1.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.1.0/manifests"},{"name":"4.0.1","sha":"25ed71ec69de604cd6331ffc02c8c7c886d33b24","kind":"tag","published_at":"2021-10-08T11:54:44.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.0.1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.0.1/manifests"},{"name":"4.0.0","sha":"9bdba3d648d9f9ec6820d7ed50ea94bc300e24c6","kind":"tag","published_at":"2021-09-20T14:43:45.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/4.0.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/4.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@4.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/4.0.0/manifests"},{"name":"3.0.0","sha":"a835a2117802602aa9f1269a12c6f35c4f840f15","kind":"tag","published_at":"2020-09-23T19:24:42.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/3.0.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/3.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@3.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/3.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/3.0.0/manifests"},{"name":"2.5.2","sha":"e5657244f60b33c6797f0793a77f243e828e681e","kind":"tag","published_at":"2020-09-22T07:07:51.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.5.2","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.5.2/manifests"},{"name":"2.5.1","sha":"9618c8f346a921a7239680fccd87bbd7eba29935","kind":"tag","published_at":"2020-09-16T13:35:58.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.5.1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.5.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.5.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.5.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.5.1/manifests"},{"name":"2.5.0","sha":"9f41e8ef5f6ea460f946bbd9d1ec0f165f5d86d0","kind":"tag","published_at":"2020-09-16T12:04:10.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.5.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.5.0/manifests"},{"name":"2.4.1","sha":"fca31271ff673860e222b579779160b804c66c2b","kind":"commit","published_at":"2020-03-31T12:33:10.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.4.1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.4.1/manifests"},{"name":"2.4.0","sha":"9aa45da6d3895512501f5804031903962e35a6bb","kind":"commit","published_at":"2020-03-30T13:44:57.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.4.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.4.0/manifests"},{"name":"2.3.3","sha":"3882cdaa7ce23b76e4156ac8bc4292ccfef4e7e4","kind":"commit","published_at":"2020-03-17T13:31:58.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.3.3","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.3.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.3.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.3/manifests"},{"name":"2.3.2","sha":"3d666e27a1f77b414ef5ff97bfc74dfa3fc38067","kind":"commit","published_at":"2020-02-19T14:58:51.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.3.2","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.3.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.3.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.2/manifests"},{"name":"2.3.1","sha":"5bce1d22b306faa18cec2fb105df6876be5d541d","kind":"commit","published_at":"2020-02-11T09:33:57.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.3.1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.3.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.3.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.1/manifests"},{"name":"2.3.0","sha":"aa7086cdd8bc9e79a7ed860f8df08c24d783fa0a","kind":"commit","published_at":"2019-12-13T13:28:35.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.3.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.3.0/manifests"},{"name":"2.2.5","sha":"7599ee70f5e79d3bb4032911d951ccbc9c80c312","kind":"commit","published_at":"2019-09-11T09:44:37.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.2.5","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.2.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.2.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.2.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.2.5/manifests"},{"name":"2.2.4","sha":"9e9fff0bdf4ccdeded6ff6203b3b89874191728d","kind":"commit","published_at":"2019-02-20T07:48:25.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.2.4","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.2.4/manifests"},{"name":"2.2.3","sha":"90130a1d46be9d11e500294d8f75fd77d3d24894","kind":"commit","published_at":"2018-08-14T12:42:19.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.2.3","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.2.3/manifests"},{"name":"v2.2.1","sha":"19f7f627afeb89502bd8809c8c596ed49fa66c16","kind":"tag","published_at":"2017-09-28T09:25:24.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v2.2.1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v2.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v2.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.2.1/manifests"},{"name":"v2.2.0","sha":"0916fbf3288248426a81ae4bf1517765cf023d1e","kind":"tag","published_at":"2017-09-04T14:04:14.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v2.2.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v2.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v2.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.2.0/manifests"},{"name":"v2.1.0","sha":"84fd634df8c37a783f652dc7998109f58de549f2","kind":"tag","published_at":"2017-05-08T12:57:34.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v2.1.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v2.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v2.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.1.0/manifests"},{"name":"2.0.0-beta5","sha":"ebbade889be5f68e308314a039719be1d3aa0478","kind":"tag","published_at":"2016-10-04T13:38:40.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/2.0.0-beta5","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/2.0.0-beta5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@2.0.0-beta5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.0.0-beta5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/2.0.0-beta5/manifests"},{"name":"v2.0.0-beta4","sha":"27d283606fb48ef51865c7434ea0dc9e3cd11025","kind":"tag","published_at":"2016-09-23T08:35:50.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v2.0.0-beta4","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v2.0.0-beta4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v2.0.0-beta4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.0.0-beta4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.0.0-beta4/manifests"},{"name":"v2.0.0-beta3","sha":"2a80d02d29e49a397b31600536ce9913f63b3990","kind":"tag","published_at":"2016-06-21T08:20:35.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v2.0.0-beta3","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v2.0.0-beta3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v2.0.0-beta3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.0.0-beta3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.0.0-beta3/manifests"},{"name":"v2.0.0-beta1","sha":"26f06b804eae0b809b88446058408f586d6049ec","kind":"tag","published_at":"2016-06-17T11:18:47.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v2.0.0-beta1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v2.0.0-beta1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v2.0.0-beta1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.0.0-beta1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v2.0.0-beta1/manifests"},{"name":"v0.6.0","sha":"be0ec803cc7ca1df83a75cf5b553314ddd56a59d","kind":"tag","published_at":"2016-02-08T16:04:45.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v0.6.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v0.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.6.0/manifests"},{"name":"v0.4.0","sha":"2ca90b1d9abe3b25ff31331fd30ecf613a391311","kind":"tag","published_at":"2015-11-13T09:16:09.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v0.4.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v0.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v0.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.4.0/manifests"},{"name":"v0.3.1","sha":"f0b5419cb1c45b3ecddc344e5787356ac3c44f59","kind":"commit","published_at":"2015-09-18T09:37:04.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v0.3.1","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v0.3.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v0.3.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.3.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.3.1/manifests"},{"name":"v0.3.0","sha":"ca772b145da2efc7741702bd3afd881fbaef4c0c","kind":"commit","published_at":"2015-09-08T11:50:20.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v0.3.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.3.0/manifests"},{"name":"v0.2.0","sha":"4c8571dbb8b42f624340af60085059f15ac1a9d5","kind":"tag","published_at":"2015-06-26T07:57:37.000Z","download_url":"https://codeload.github.com/Clinical-Genomics/genotype/tar.gz/v0.2.0","html_url":"https://github.com/Clinical-Genomics/genotype/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Clinical-Genomics/genotype@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/tags/v0.2.0/manifests"}]},"repo_metadata_updated_at":"2025-07-10T09:08:47.278Z","dependent_packages_count":1,"downloads":71,"downloads_period":"last-month","dependent_repos_count":2,"rankings":{"downloads":28.814321440256858,"dependent_repos_count":11.585491831503234,"dependent_packages_count":4.732581140073995,"stargazers_count":18.45591428292679,"forks_count":19.104607809191133,"docker_downloads_count":null,"average":16.5385833007904},"purl":"pkg:pypi/genotype","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/genotype","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/genotype","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/genotype/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-06-06T18:39:35.749Z","issues_count":31,"pull_requests_count":38,"avg_time_to_close_issue":20042418.09090909,"avg_time_to_close_pull_request":2840418.8529411764,"issues_closed_count":22,"pull_requests_closed_count":34,"pull_request_authors_count":9,"issue_authors_count":9,"avg_comments_per_issue":0.8064516129032258,"avg_comments_per_pull_request":1.9210526315789473,"merged_pull_requests_count":31,"bot_issues_count":0,"bot_pull_requests_count":3,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/issues","maintainers":[{"login":"northwestwitch","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/northwestwitch"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/genotype/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/genotype/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/genotype/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/genotype/related_packages","maintainers":[{"uuid":"henriks","login":"henriks","name":null,"email":null,"url":null,"packages_count":24,"html_url":"https://pypi.org/user/henriks/","role":null,"created_at":"2023-02-06T22:41:27.850Z","updated_at":"2023-02-06T22:41:27.850Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/henriks/packages"},{"uuid":"karlnyr","login":"karlnyr","name":null,"email":null,"url":null,"packages_count":9,"html_url":"https://pypi.org/user/karlnyr/","role":null,"created_at":"2023-02-06T22:41:27.871Z","updated_at":"2023-02-06T22:41:27.871Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/karlnyr/packages"},{"uuid":"clingen","login":"clingen","name":null,"email":null,"url":null,"packages_count":23,"html_url":"https://pypi.org/user/clingen/","role":null,"created_at":"2023-02-06T22:41:27.880Z","updated_at":"2023-02-06T22:41:27.880Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/clingen/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726140,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":585727,"full_name":"Clinical-Genomics/genotype","default_branch":"master","committers":[{"name":"Robin Andeer","email":"robin.andeer@gmail.com","login":null,"count":232},{"name":"Måns Magnusson","email":"mans.magnusson@scilifelab.se","login":null,"count":72},{"name":"Maya","email":"maya.brandi@scilifelab.se","login":null,"count":61},{"name":"Patrik Grenfeldt","email":"patrik.grenfeldt@scilifelab.se","login":null,"count":56},{"name":"Mropat","email":"mariaropat@gmail.com","login":null,"count":13},{"name":"Clinical Genomics Bot","email":"clinicalgenomicsstockholm@gmail.com","login":null,"count":8},{"name":"Henrik Stranneheim","email":"henrik.stranneheim@scilifelab.se","login":null,"count":3},{"name":"Kenny Billiau","email":"kenny.billiau@scilifelab.se","login":null,"count":2},{"name":"ChristianOertlin","email":"c.oertlin@gmail.com","login":null,"count":2},{"name":"Barry Stokman","email":"26384108+barrystokman","login":"barrystokman","count":2},{"name":"Kenny Billiau","email":"Kenny.billiau@scilifelab.se","login":null,"count":2},{"name":"northwestwitch","email":"rasi.chiara@gmail.com","login":null,"count":1},{"name":"Maria Ropat","email":"35531751+Mropat","login":"Mropat","count":1},{"name":"Robin Andeer","email":"robin.andeer@scilifelab.se","login":null,"count":1}],"total_commits":456,"total_committers":14,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":32.57142857142857,"dds":0.49122807017543857,"past_year_committers":[{"name":"Clinical Genomics Bot","email":"clinicalgenomicsstockholm@gmail.com","login":null,"count":5},{"name":"Henrik Stranneheim","email":"henrik.stranneheim@scilifelab.se","login":null,"count":3},{"name":"ChristianOertlin","email":"c.oertlin@gmail.com","login":null,"count":2}],"past_year_total_commits":10,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":3.3333333333333335,"past_year_dds":0.5,"last_synced_at":"2023-10-25T14:07:44.209Z","last_synced_commit":"72c405b6dbaa198d9b724135dcac6307bf47ca87","created_at":"2023-03-09T06:04:44.874Z","updated_at":"2023-10-25T14:07:44.210Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.276Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Clinical-Genomics/genotype","html_url":"https://github.com/Clinical-Genomics/genotype","last_synced_at":"2025-07-10T09:08:47.589Z","status":null,"issues_count":31,"pull_requests_count":39,"avg_time_to_close_issue":20042418.09090909,"avg_time_to_close_pull_request":2840418.8529411764,"issues_closed_count":22,"pull_requests_closed_count":34,"pull_request_authors_count":10,"issue_authors_count":9,"avg_comments_per_issue":0.8064516129032258,"avg_comments_per_pull_request":1.8717948717948718,"merged_pull_requests_count":31,"bot_issues_count":0,"bot_pull_requests_count":3,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T14:43:27.025Z","updated_at":"2025-09-01T03:13:44.323Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Clinical-Genomics%2Fgenotype/issues","issue_labels_count":{"bug":3},"pull_request_labels_count":{"dependencies":4,"enhancement":1,"bug":1},"issue_author_associations_count":{"CONTRIBUTOR":25,"NONE":3,"MEMBER":2},"pull_request_author_associations_count":{"CONTRIBUTOR":38,"NONE":4,"MEMBER":1},"issue_authors":{"robinandeer":16,"moonso":7,"northwestwitch":2,"patrikgrenfeldt":1,"ChrOertlin":1,"SofiaOtero":1,"silvius76":1,"Karl-Svard":1},"pull_request_authors":{"henrikstranneheim":11,"patrikgrenfeldt":7,"mayabrandi":6,"moonso":5,"robinandeer":5,"dependabot[bot]":3,"ChrOertlin":2,"Mropat":2,"eliottBo":1,"northwestwitch":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9966144,"issues_count":29680459,"pull_requests_count":86440165,"authors_count":9648275,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"NONE":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"eliottBo":1},"maintainers":[{"login":"northwestwitch","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/northwestwitch"}],"active_maintainers":[]},"events":{"total":{"CreateEvent":1},"last_year":{"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-28T04:41:45.227Z","updated_at":"2022-08-28T04:41:45.227Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/requirements.txt","dependencies":[{"id":3009937133,"package_name":"cython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937134,"package_name":"wheel","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937135,"package_name":"Alchy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937136,"package_name":"SQLAlchemy","ecosystem":"pypi","requirements":"\u003c1.4","direct":true,"kind":"runtime","optional":false},{"id":3009937137,"package_name":"pymysql","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937138,"package_name":"cyvcf2","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937139,"package_name":"xlrd","ecosystem":"pypi","requirements":"==1.2.0","direct":true,"kind":"runtime","optional":false},{"id":3009937140,"package_name":"pysam","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937141,"package_name":"pyyaml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937142,"package_name":"coloredlogs","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937143,"package_name":"click","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937144,"package_name":"Flask","ecosystem":"pypi","requirements":"==1.1.1","direct":true,"kind":"runtime","optional":false},{"id":3009937145,"package_name":"Flask-Bootstrap","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937146,"package_name":"Flask-Reverse-Proxy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937147,"package_name":"Flask-SQLAlchemy","ecosystem":"pypi","requirements":"==2.1","direct":true,"kind":"runtime","optional":false},{"id":3009937148,"package_name":"Flask-Alchy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937149,"package_name":"Flask-Security","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937150,"package_name":"werkzeug","ecosystem":"pypi","requirements":"\u003c1.0.0","direct":true,"kind":"runtime","optional":false},{"id":3009937151,"package_name":"Flask-Login","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937152,"package_name":"Flask-Dance","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937153,"package_name":"ruamel.yaml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3009937154,"package_name":"gunicorn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/black.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:33.611Z","updated_at":"2023-01-13T20:45:33.611Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/black.yml","dependencies":[{"id":6891411635,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2.6.0","direct":true,"kind":"composite","optional":false},{"id":6891411636,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4.3.1","direct":true,"kind":"composite","optional":false},{"id":6891411637,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/build_and_publish.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:33.765Z","updated_at":"2023-01-13T20:45:33.765Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/build_and_publish.yml","dependencies":[{"id":6891411638,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2.6.0","direct":true,"kind":"composite","optional":false},{"id":6891411639,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4.3.1","direct":true,"kind":"composite","optional":false},{"id":6891411640,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/build_dockerfile_on_push.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:33.920Z","updated_at":"2023-01-13T20:45:33.920Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/build_dockerfile_on_push.yml","dependencies":[{"id":6891411641,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2.6.0","direct":true,"kind":"composite","optional":false},{"id":6891411642,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v2.1.0","direct":true,"kind":"composite","optional":false},{"id":6891411643,"package_name":"docker/setup-buildx-action","ecosystem":"actions","requirements":"v2.2.1","direct":true,"kind":"composite","optional":false},{"id":6891411644,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v3.2.0","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/build_dockerfile_on_release.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:34.057Z","updated_at":"2023-01-13T20:45:34.057Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/build_dockerfile_on_release.yml","dependencies":[{"id":6891411645,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2.6.0","direct":true,"kind":"composite","optional":false},{"id":6891411646,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v2.1.0","direct":true,"kind":"composite","optional":false},{"id":6891411647,"package_name":"docker/setup-buildx-action","ecosystem":"actions","requirements":"v2.2.1","direct":true,"kind":"composite","optional":false},{"id":6891411648,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v3.2.0","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/build_docs.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:34.312Z","updated_at":"2023-01-13T20:45:34.312Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/build_docs.yml","dependencies":[{"id":6891411649,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2.6.0","direct":true,"kind":"composite","optional":false},{"id":6891411650,"package_name":"mhausenblas/mkdocs-deploy-gh-pages","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/bumpversion_on_merge_master.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:34.471Z","updated_at":"2023-01-13T20:45:34.471Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/bumpversion_on_merge_master.yml","dependencies":[{"id":6891411851,"package_name":"Clinical-Genomics/bump2version-ci","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/installations.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:34.685Z","updated_at":"2023-01-13T20:45:34.685Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/installations.yml","dependencies":[{"id":6891411859,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2.6.0","direct":true,"kind":"composite","optional":false},{"id":6891411860,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4.3.1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/tests_and_coverage.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:34.827Z","updated_at":"2023-01-13T20:45:34.827Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/tests_and_coverage.yml","dependencies":[{"id":6891411861,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2.6.0","direct":true,"kind":"composite","optional":false},{"id":6891411862,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4.3.1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-01-13T20:45:34.935Z","updated_at":"2023-01-13T20:45:34.935Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/Dockerfile","dependencies":[{"id":6891411863,"package_name":"python","ecosystem":"docker","requirements":"3.7-slim","direct":true,"kind":"build","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/deploy_prod.yml","sha":null,"kind":"manifest","created_at":"2024-02-25T14:55:09.417Z","updated_at":"2024-02-25T14:55:09.417Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/deploy_prod.yml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/deploy_stage.yml","sha":null,"kind":"manifest","created_at":"2024-02-25T14:55:09.424Z","updated_at":"2024-02-25T14:55:09.424Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/.github/workflows/deploy_stage.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-02-25T14:55:09.436Z","updated_at":"2024-02-25T14:55:09.436Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/pyproject.toml","dependencies":[]},{"ecosystem":"pypi","filepath":"poetry.lock","sha":null,"kind":"lockfile","created_at":"2025-06-06T18:50:49.389Z","updated_at":"2025-06-06T18:50:49.389Z","repository_link":"https://github.com/Clinical-Genomics/genotype/blob/master/poetry.lock","dependencies":[{"id":23492279929,"package_name":"alchy","ecosystem":"pypi","requirements":"2.2.2","direct":false,"kind":"runtime","optional":false},{"id":23492279930,"package_name":"atomicwrites","ecosystem":"pypi","requirements":"1.4.1","direct":false,"kind":"runtime","optional":false},{"id":23492279932,"package_name":"attrs","ecosystem":"pypi","requirements":"23.2.0","direct":false,"kind":"runtime","optional":false},{"id":23492279933,"package_name":"babel","ecosystem":"pypi","requirements":"2.14.0","direct":false,"kind":"runtime","optional":false},{"id":23492279935,"package_name":"blinker","ecosystem":"pypi","requirements":"1.7.0","direct":false,"kind":"runtime","optional":false},{"id":23492279937,"package_name":"certifi","ecosystem":"pypi","requirements":"2024.2.2","direct":false,"kind":"runtime","optional":false},{"id":23492279939,"package_name":"cfgv","ecosystem":"pypi","requirements":"3.4.0","direct":false,"kind":"runtime","optional":false},{"id":23492279942,"package_name":"charset-normalizer","ecosystem":"pypi","requirements":"3.3.2","direct":false,"kind":"runtime","optional":false},{"id":23492279944,"package_name":"click","ecosystem":"pypi","requirements":"8.1.7","direct":false,"kind":"runtime","optional":false},{"id":23492279946,"package_name":"colorama","ecosystem":"pypi","requirements":"0.4.6","direct":false,"kind":"runtime","optional":false},{"id":23492279948,"package_name":"coloredlogs","ecosystem":"pypi","requirements":"15.0.1","direct":false,"kind":"runtime","optional":false},{"id":23492279950,"package_name":"cyvcf2","ecosystem":"pypi","requirements":"0.30.28","direct":false,"kind":"runtime","optional":false},{"id":23492280018,"package_name":"distlib","ecosystem":"pypi","requirements":"0.3.8","direct":false,"kind":"runtime","optional":false},{"id":23492280019,"package_name":"dominate","ecosystem":"pypi","requirements":"2.9.1","direct":false,"kind":"runtime","optional":false},{"id":23492280166,"package_name":"filelock","ecosystem":"pypi","requirements":"3.13.1","direct":false,"kind":"runtime","optional":false},{"id":23492280167,"package_name":"flask","ecosystem":"pypi","requirements":"1.1.1","direct":false,"kind":"runtime","optional":false},{"id":23492280168,"package_name":"flask-alchy","ecosystem":"pypi","requirements":"0.5.0","direct":false,"kind":"runtime","optional":false},{"id":23492280232,"package_name":"flask-babelex","ecosystem":"pypi","requirements":"0.9.4","direct":false,"kind":"runtime","optional":false},{"id":23492280275,"package_name":"flask-bootstrap","ecosystem":"pypi","requirements":"3.3.7.1","direct":false,"kind":"runtime","optional":false},{"id":23492280290,"package_name":"flask-dance","ecosystem":"pypi","requirements":"3.0.0","direct":false,"kind":"runtime","optional":false},{"id":23492280291,"package_name":"flask-login","ecosystem":"pypi","requirements":"0.5.0","direct":false,"kind":"runtime","optional":false},{"id":23492280292,"package_name":"flask-mail","ecosystem":"pypi","requirements":"0.9.1","direct":false,"kind":"runtime","optional":false},{"id":23492280293,"package_name":"flask-principal","ecosystem":"pypi","requirements":"0.4.0","direct":false,"kind":"runtime","optional":false},{"id":23492280298,"package_name":"flask-reverse-proxy","ecosystem":"pypi","requirements":"0.2.0.2","direct":false,"kind":"runtime","optional":false},{"id":23492280332,"package_name":"flask-security","ecosystem":"pypi","requirements":"3.0.0","direct":false,"kind":"runtime","optional":false},{"id":23492280370,"package_name":"flask-sqlalchemy","ecosystem":"pypi","requirements":"2.1","direct":false,"kind":"runtime","optional":false},{"id":23492280371,"package_name":"flask-wtf","ecosystem":"pypi","requirements":"1.2.1","direct":false,"kind":"runtime","optional":false},{"id":23492280372,"package_name":"ghp-import","ecosystem":"pypi","requirements":"2.1.0","direct":false,"kind":"runtime","optional":false},{"id":23492280373,"package_name":"gunicorn","ecosystem":"pypi","requirements":"21.2.0","direct":false,"kind":"runtime","optional":false},{"id":23492280374,"package_name":"humanfriendly","ecosystem":"pypi","requirements":"10.0","direct":false,"kind":"runtime","optional":false},{"id":23492280375,"package_name":"identify","ecosystem":"pypi","requirements":"2.5.35","direct":false,"kind":"runtime","optional":false},{"id":23492280376,"package_name":"idna","ecosystem":"pypi","requirements":"3.6","direct":false,"kind":"runtime","optional":false},{"id":23492280377,"package_name":"importlib-metadata","ecosystem":"pypi","requirements":"7.0.1","direct":false,"kind":"runtime","optional":false},{"id":23492280378,"package_name":"itsdangerous","ecosystem":"pypi","requirements":"1.1.0","direct":false,"kind":"runtime","optional":false},{"id":23492280379,"package_name":"jinja2","ecosystem":"pypi","requirements":"2.11.2","direct":false,"kind":"runtime","optional":false},{"id":23492280380,"package_name":"markdown","ecosystem":"pypi","requirements":"3.5.2","direct":false,"kind":"runtime","optional":false},{"id":23492280381,"package_name":"markupsafe","ecosystem":"pypi","requirements":"2.0.1","direct":false,"kind":"runtime","optional":false},{"id":23492280382,"package_name":"mergedeep","ecosystem":"pypi","requirements":"1.3.4","direct":false,"kind":"runtime","optional":false},{"id":23492280383,"package_name":"mkdocs","ecosystem":"pypi","requirements":"1.5.3","direct":false,"kind":"runtime","optional":false},{"id":23492280384,"package_name":"mkdocs-material","ecosystem":"pypi","requirements":"8.3.0","direct":false,"kind":"runtime","optional":false},{"id":23492280385,"package_name":"mkdocs-material-extensions","ecosystem":"pypi","requirements":"1.3.1","direct":false,"kind":"runtime","optional":false},{"id":23492280386,"package_name":"more-itertools","ecosystem":"pypi","requirements":"10.2.0","direct":false,"kind":"runtime","optional":false},{"id":23492280387,"package_name":"nodeenv","ecosystem":"pypi","requirements":"1.8.0","direct":false,"kind":"runtime","optional":false},{"id":23492280388,"package_name":"numpy","ecosystem":"pypi","requirements":"1.26.1","direct":false,"kind":"runtime","optional":false},{"id":23492280389,"package_name":"oauthlib","ecosystem":"pypi","requirements":"3.2.2","direct":false,"kind":"runtime","optional":false},{"id":23492280390,"package_name":"packaging","ecosystem":"pypi","requirements":"23.2","direct":false,"kind":"runtime","optional":false},{"id":23492280391,"package_name":"passlib","ecosystem":"pypi","requirements":"1.7.4","direct":false,"kind":"runtime","optional":false},{"id":23492280392,"package_name":"pathspec","ecosystem":"pypi","requirements":"0.12.1","direct":false,"kind":"runtime","optional":false},{"id":23492280393,"package_name":"platformdirs","ecosystem":"pypi","requirements":"4.2.0","direct":false,"kind":"runtime","optional":false},{"id":23492280394,"package_name":"pluggy","ecosystem":"pypi","requirements":"0.13.1","direct":false,"kind":"runtime","optional":false},{"id":23492280395,"package_name":"pre-commit","ecosystem":"pypi","requirements":"3.6.2","direct":false,"kind":"runtime","optional":false},{"id":23492280396,"package_name":"py","ecosystem":"pypi","requirements":"1.11.0","direct":false,"kind":"runtime","optional":false},{"id":23492280397,"package_name":"pydash","ecosystem":"pypi","requirements":"7.0.7","direct":false,"kind":"runtime","optional":false},{"id":23492280412,"package_name":"pygments","ecosystem":"pypi","requirements":"2.17.2","direct":false,"kind":"runtime","optional":false},{"id":23492280413,"package_name":"pymdown-extensions","ecosystem":"pypi","requirements":"10.7","direct":false,"kind":"runtime","optional":false},{"id":23492280414,"package_name":"pymysql","ecosystem":"pypi","requirements":"1.1.0","direct":false,"kind":"runtime","optional":false},{"id":23492280415,"package_name":"pyreadline3","ecosystem":"pypi","requirements":"3.4.1","direct":false,"kind":"runtime","optional":false},{"id":23492280416,"package_name":"pysam","ecosystem":"pypi","requirements":"0.22.0","direct":false,"kind":"runtime","optional":false},{"id":23492280417,"package_name":"pytest","ecosystem":"pypi","requirements":"5.2.0","direct":false,"kind":"runtime","optional":false},{"id":23492280418,"package_name":"pytest-mock","ecosystem":"pypi","requirements":"3.12.0","direct":false,"kind":"runtime","optional":false},{"id":23492280419,"package_name":"python-dateutil","ecosystem":"pypi","requirements":"2.8.2","direct":false,"kind":"runtime","optional":false},{"id":23492280420,"package_name":"pyyaml","ecosystem":"pypi","requirements":"6.0.1","direct":false,"kind":"runtime","optional":false},{"id":23492280421,"package_name":"pyyaml-env-tag","ecosystem":"pypi","requirements":"0.1","direct":false,"kind":"runtime","optional":false},{"id":23492280422,"package_name":"requests","ecosystem":"pypi","requirements":"2.31.0","direct":false,"kind":"runtime","optional":false},{"id":23492280423,"package_name":"requests-oauthlib","ecosystem":"pypi","requirements":"1.3.1","direct":false,"kind":"runtime","optional":false},{"id":23492280424,"package_name":"ruamel-yaml","ecosystem":"pypi","requirements":"0.18.6","direct":false,"kind":"runtime","optional":false},{"id":23492280425,"package_name":"ruamel-yaml-clib","ecosystem":"pypi","requirements":"0.2.8","direct":false,"kind":"runtime","optional":false},{"id":23492280426,"package_name":"setuptools","ecosystem":"pypi","requirements":"69.1.1","direct":false,"kind":"runtime","optional":false},{"id":23492280427,"package_name":"six","ecosystem":"pypi","requirements":"1.16.0","direct":false,"kind":"runtime","optional":false},{"id":23492280428,"package_name":"speaklater","ecosystem":"pypi","requirements":"1.3","direct":false,"kind":"runtime","optional":false},{"id":23492280439,"package_name":"sqlalchemy","ecosystem":"pypi","requirements":"1.3.24","direct":false,"kind":"runtime","optional":false},{"id":23492280440,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"4.9.0","direct":false,"kind":"runtime","optional":false},{"id":23492280441,"package_name":"urllib3","ecosystem":"pypi","requirements":"2.2.1","direct":false,"kind":"runtime","optional":false},{"id":23492280442,"package_name":"urlobject","ecosystem":"pypi","requirements":"2.4.3","direct":false,"kind":"runtime","optional":false},{"id":23492280497,"package_name":"virtualenv","ecosystem":"pypi","requirements":"20.25.1","direct":false,"kind":"runtime","optional":false},{"id":23492280498,"package_name":"visitor","ecosystem":"pypi","requirements":"0.1.3","direct":false,"kind":"runtime","optional":false},{"id":23492280499,"package_name":"watchdog","ecosystem":"pypi","requirements":"4.0.0","direct":false,"kind":"runtime","optional":false},{"id":23492280500,"package_name":"wcwidth","ecosystem":"pypi","requirements":"0.2.13","direct":false,"kind":"runtime","optional":false},{"id":23492280501,"package_name":"werkzeug","ecosystem":"pypi","requirements":"0.16.1","direct":false,"kind":"runtime","optional":false},{"id":23492280502,"package_name":"wtforms","ecosystem":"pypi","requirements":"3.1.2","direct":false,"kind":"runtime","optional":false},{"id":23492280503,"package_name":"xlrd","ecosystem":"pypi","requirements":"1.2.0","direct":false,"kind":"runtime","optional":false},{"id":23492280504,"package_name":"zipp","ecosystem":"pypi","requirements":"3.17.0","direct":false,"kind":"runtime","optional":false}]}],"score":10.027385189192366,"created_at":"2025-09-08T11:18:36.515Z","updated_at":"2025-10-07T08:24:53.786Z","avatar_url":"https://github.com/Clinical-Genomics.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":71,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/65070","html_url":"https://science.ecosyste.ms/projects/65070"}