{"id":6532,"name":"tophat-recondition","description":"Post-processor for TopHat unmapped.bam files making them usable by downstream software.","url":"https://github.com/cbrueffer/tophat-recondition","last_synced_at":"2025-09-04T19:09:41.820Z","repository":{"id":22582418,"uuid":"25924017","full_name":"cbrueffer/tophat-recondition","owner":"cbrueffer","description":"Post-processor for TopHat unmapped.bam files making them usable by downstream software.","archived":false,"fork":false,"pushed_at":"2019-07-18T21:28:14.000Z","size":58,"stargazers_count":7,"open_issues_count":1,"forks_count":5,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-07-18T17:35:32.548Z","etag":null,"topics":["bioinformatics","ngs","python","sam","tophat","tophat-recondition"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cbrueffer.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION","codeowners":null,"security":null,"support":null}},"created_at":"2014-10-29T14:12:58.000Z","updated_at":"2024-02-18T21:10:10.000Z","dependencies_parsed_at":"2022-07-26T03:02:14.728Z","dependency_job_id":null,"html_url":"https://github.com/cbrueffer/tophat-recondition","commit_stats":null,"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/cbrueffer/tophat-recondition","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbrueffer","download_url":"https://codeload.github.com/cbrueffer/tophat-recondition/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273657467,"owners_count":25145089,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cbrueffer","name":"Christian Brueffer","uuid":"2705287","kind":"user","description":"Freelance Bioinformatics and Data Science Consultant","email":"","website":"https://www.brueffer.io","location":"Lund, Sweden","twitter":"cbrueffer","company":"InSilico Consulting AB","icon_url":"https://avatars.githubusercontent.com/u/2705287?u=2750da50c97376a0783919924a6e7542d3b3e6fc\u0026v=4","repositories_count":21,"last_synced_at":"2023-04-01T10:19:31.816Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cbrueffer","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-04T09:38:12.740Z","updated_at":"2023-04-01T10:19:31.984Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbrueffer","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbrueffer/repositories"},"packages":[],"commits":{"id":3103634,"full_name":"cbrueffer/tophat-recondition","default_branch":"master","committers":[{"name":"Christian Brueffer","email":"christian@brueffer.de","login":"cbrueffer","count":98},{"name":"roryk","email":"rory.kirchner@gmail.com","login":"roryk","count":1}],"total_commits":99,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":49.5,"dds":0.010101010101010055,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-07-18T14:51:49.849Z","last_synced_commit":"af0637f789e1286f3852f822d8a6e8f8743e218e","created_at":"2024-10-13T13:14:09.100Z","updated_at":"2025-07-18T14:51:49.849Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"cbrueffer/tophat-recondition","html_url":"https://github.com/cbrueffer/tophat-recondition","last_synced_at":"2025-07-18T14:49:17.204Z","status":"error","issues_count":3,"pull_requests_count":1,"avg_time_to_close_issue":687742.5,"avg_time_to_close_pull_request":90677.0,"issues_closed_count":2,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":6.0,"avg_comments_per_pull_request":8.0,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-10-13T13:14:09.849Z","updated_at":"2025-07-18T14:49:17.204Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbrueffer%2Ftophat-recondition/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":2,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":1},"issue_authors":{"drchriscole":1,"roryk":1,"EdwardBetts":1},"pull_request_authors":{"roryk":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-24T00:00:05.600Z","repositories_count":8422551,"issues_count":15803158,"pull_requests_count":37658719,"authors_count":5664642,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["bioinformatics","ngs","python","sam","tophat","tophat-recondition"],"dependencies":[],"score":2.772588722239781,"created_at":"2025-09-04T15:50:20.297Z","updated_at":"2025-10-07T08:05:42.505Z","avatar_url":"https://github.com/cbrueffer.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["http://dx.doi.org/10.1186/s12859-016-1058-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/6532","html_url":"https://science.ecosyste.ms/projects/6532","bibtex_url":"https://science.ecosyste.ms/projects/6532/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/6532/export.apalike"}