{"id":65321,"name":"gffutils","description":"GFF and GTF file manipulation and interconversion","url":"https://github.com/daler/gffutils","last_synced_at":"2025-09-08T13:23:11.408Z","repository":{"id":2300865,"uuid":"2562619","full_name":"daler/gffutils","owner":"daler","description":"GFF and GTF file manipulation and interconversion","archived":false,"fork":false,"pushed_at":"2024-04-13T17:41:00.000Z","size":32392,"stargazers_count":305,"open_issues_count":23,"forks_count":79,"subscribers_count":13,"default_branch":"master","last_synced_at":"2025-08-27T15:55:37.056Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://daler.github.io/gffutils","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/daler.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2011-10-12T13:48:14.000Z","updated_at":"2025-08-12T03:32:41.000Z","dependencies_parsed_at":"2023-07-05T21:32:54.492Z","dependency_job_id":"87f5fcc0-739c-4ad8-a0e2-71ce157f318e","html_url":"https://github.com/daler/gffutils","commit_stats":{"total_commits":659,"total_committers":23,"mean_commits":"28.652173913043477","dds":"0.19119878603945373","last_synced_commit":"955fb41a32022e11683a873a7bdc78444d5628cc"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/daler/gffutils","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/sbom","scorecard":{"id":317691,"data":{"date":"2025-08-11","repo":{"name":"github.com/daler/gffutils","commit":"67a4cd7edc11bb2d1ff97d8c777fb1e6006296e5"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.2,"checks":[{"name":"Code-Review","score":5,"reason":"Found 3/6 approved changesets -- score normalized to 5","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/main.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:105: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: downloadThenRun not pinned by hash: .github/workflows/main.yml:23","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:37","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:48","Info:   0 out of   2 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   1 downloadThenRun dependencies pinned","Info:   0 out of   2 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":9,"reason":"1 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-9772-cwx9-r4cj"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 29 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-18T00:36:55.739Z","repository_id":2300865,"created_at":"2025-08-18T00:36:55.739Z","updated_at":"2025-08-18T00:36:55.739Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274190965,"owners_count":25238269,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"daler","name":"Ryan Dale","uuid":"115406","kind":"user","description":"","email":"","website":null,"location":"Bethesda, MD","twitter":null,"company":"National Institutes of Health (NIH), National Institute of Child Health and Human Development (NICHD)","icon_url":"https://avatars.githubusercontent.com/u/115406?v=4","repositories_count":55,"last_synced_at":"2024-04-29T00:10:09.787Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/daler","funding_links":[],"total_stars":946,"followers":308,"following":28,"created_at":"2022-11-02T20:38:59.333Z","updated_at":"2024-04-29T00:10:11.787Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler/repositories"},"packages":[{"id":2747082,"name":"gffutils","ecosystem":"pypi","description":"Work with GFF and GTF files in a flexible database framework","homepage":"https://github.com/daler/gffutils","licenses":"MIT License","normalized_licenses":["MIT"],"repository_url":"https://github.com/daler/gffutils","keywords_array":[],"namespace":null,"versions_count":21,"first_release_published_at":"2011-12-09T21:33:41.000Z","latest_release_published_at":"2022-10-02T21:28:20.000Z","latest_release_number":"0.11.1","last_synced_at":"2025-08-27T08:48:22.145Z","created_at":"2022-04-10T11:07:57.028Z","updated_at":"2025-08-27T23:27:56.113Z","registry_url":"https://pypi.org/project/gffutils/","install_command":"pip install gffutils --index-url https://pypi.org/simple","documentation_url":"https://gffutils.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Programming Language :: Python","Programming Language :: Python :: 2","Programming Language :: Python :: 2.6","Programming Language :: Python :: 2.7","Programming Language :: Python :: 3","Programming Language :: Python :: 3.3","Programming Language :: Python :: 3.4","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Topic :: Scientific/Engineering :: Bio-Informatics","Topic :: Software Development :: Libraries :: Python Modules"],"normalized_name":"gffutils","project_status":null},"repo_metadata":{"id":2300865,"uuid":"2562619","full_name":"daler/gffutils","owner":"daler","description":"GFF and GTF file manipulation and interconversion","archived":false,"fork":false,"pushed_at":"2024-04-13T17:41:00.000Z","size":32392,"stargazers_count":305,"open_issues_count":23,"forks_count":79,"subscribers_count":13,"default_branch":"master","last_synced_at":"2025-08-27T15:55:37.056Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://daler.github.io/gffutils","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/daler.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2011-10-12T13:48:14.000Z","updated_at":"2025-08-12T03:32:41.000Z","dependencies_parsed_at":"2023-07-05T21:32:54.492Z","dependency_job_id":"87f5fcc0-739c-4ad8-a0e2-71ce157f318e","html_url":"https://github.com/daler/gffutils","commit_stats":{"total_commits":659,"total_committers":23,"mean_commits":"28.652173913043477","dds":"0.19119878603945373","last_synced_commit":"955fb41a32022e11683a873a7bdc78444d5628cc"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/daler/gffutils","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/sbom","scorecard":{"id":317691,"data":{"date":"2025-08-11","repo":{"name":"github.com/daler/gffutils","commit":"67a4cd7edc11bb2d1ff97d8c777fb1e6006296e5"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.2,"checks":[{"name":"Code-Review","score":5,"reason":"Found 3/6 approved changesets -- score normalized to 5","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/main.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:105: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: downloadThenRun not pinned by hash: .github/workflows/main.yml:23","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:37","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:48","Info:   0 out of   2 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   1 downloadThenRun dependencies pinned","Info:   0 out of   2 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":9,"reason":"1 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-9772-cwx9-r4cj"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 29 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-18T00:36:55.739Z","repository_id":2300865,"created_at":"2025-08-18T00:36:55.739Z","updated_at":"2025-08-18T00:36:55.739Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272395955,"owners_count":24927474,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-27T02:00:09.397Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"daler","name":"Ryan Dale","uuid":"115406","kind":"user","description":"","email":"","website":null,"location":"Bethesda, MD","twitter":null,"company":"National Institutes of Health (NIH), National Institute of Child Health and Human Development (NICHD)","icon_url":"https://avatars.githubusercontent.com/u/115406?v=4","repositories_count":55,"last_synced_at":"2024-04-29T00:10:09.787Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/daler","funding_links":[],"total_stars":946,"followers":308,"following":28,"created_at":"2022-11-02T20:38:59.333Z","updated_at":"2024-04-29T00:10:11.787Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler/repositories"},"tags":[{"name":"v0.13","sha":"cce76a6c77dd9d4a12d5f1e88c3ad1389de5137e","kind":"commit","published_at":"2024-04-13T17:16:09.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.13","html_url":"https://github.com/daler/gffutils/releases/tag/v0.13","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.13","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.13","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.13/manifests"},{"name":"v0.12","sha":"955fb41a32022e11683a873a7bdc78444d5628cc","kind":"commit","published_at":"2023-07-04T21:56:35.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.12","html_url":"https://github.com/daler/gffutils/releases/tag/v0.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.12/manifests"},{"name":"v0.11.1","sha":"fdfc9fc738ae2462eb05656291ebd71baa395e24","kind":"commit","published_at":"2022-10-02T21:29:16.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.11.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.11.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.11.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11.1/manifests"},{"name":"v0.11","sha":"bbe6c3c474962f990f06cb799f8ecc97edd2ba3b","kind":"commit","published_at":"2022-06-05T16:52:29.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.11","html_url":"https://github.com/daler/gffutils/releases/tag/v0.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11/manifests"},{"name":"v0.10.1","sha":"4b5b28e610a435af359ab1c31271deea1bae4c47","kind":"tag","published_at":"2019-12-30T02:43:40.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.10.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.10.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.10.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10.1/manifests"},{"name":"v0.10","sha":"1996c82c50d4f9670a5a8423431489360c0a1370","kind":"commit","published_at":"2019-12-29T22:19:38.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.10","html_url":"https://github.com/daler/gffutils/releases/tag/v0.10","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.10","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10/manifests"},{"name":"v0.9","sha":"3af7865243dd2d3af9c50f1754daa30c02604582","kind":"tag","published_at":"2017-08-09T14:40:59.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.9","html_url":"https://github.com/daler/gffutils/releases/tag/v0.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.9/manifests"},{"name":"v0.8.7.1","sha":"aca52e13ffc53945e46cc79f4c136d942f78fd16","kind":"tag","published_at":"2016-01-15T18:53:24.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.7.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.7.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7.1/manifests"},{"name":"v0.8.7","sha":"e205bfb308e43580cfa3075d6ce5012134e47b2c","kind":"tag","published_at":"2016-01-15T17:55:21.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.7","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7/manifests"},{"name":"v0.8.6.1","sha":"d4b7d33cca7eb2d929c1a7c291b0df9546c89f12","kind":"tag","published_at":"2015-11-14T20:29:21.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.6.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6.1/manifests"},{"name":"v0.8.6","sha":"c71b37291d1aa9c9fdd98b2668466bf6f3f018e3","kind":"tag","published_at":"2015-11-14T20:17:55.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.6","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6/manifests"},{"name":"v0.8.5","sha":"1f7d9cb3b401d69aab779727c8b638b4bcc47a0e","kind":"tag","published_at":"2015-08-06T16:07:46.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.5","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.5/manifests"},{"name":"v0.8.3","sha":"a16b095cc11e6359e2dd5449fcb8006fb3fd7c8c","kind":"tag","published_at":"2015-01-28T19:10:12.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.3","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.3/manifests"},{"name":"v0.8.2","sha":"3c936e273f88c45bb0cc80669dda2c5a5e106b48","kind":"tag","published_at":"2014-06-03T21:05:11.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.2","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.2/manifests"},{"name":"v0.5","sha":"f25602c28c6f42ec1d4c3d73b1bc2b99091e9019","kind":"tag","published_at":"2013-12-04T23:15:28.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.5","html_url":"https://github.com/daler/gffutils/releases/tag/v0.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.5/manifests"}]},"repo_metadata_updated_at":"2025-08-27T23:27:56.112Z","dependent_packages_count":31,"downloads":17079,"downloads_period":"last-month","dependent_repos_count":96,"rankings":{"downloads":3.3127936179077775,"dependent_repos_count":1.5196237741115295,"dependent_packages_count":0.5050785051052693,"stargazers_count":4.04765045121506,"forks_count":5.171553587915838,"docker_downloads_count":1.2604785040155653,"average":2.6361964067118397},"purl":"pkg:pypi/gffutils","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/gffutils","docker_dependents_count":16,"docker_downloads_count":1035,"usage_url":"https://repos.ecosyste.ms/usage/pypi/gffutils","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/gffutils/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-27T08:52:35.748Z","issues_count":75,"pull_requests_count":52,"avg_time_to_close_issue":50839693.11111111,"avg_time_to_close_pull_request":12987381.104166666,"issues_closed_count":63,"pull_requests_closed_count":48,"pull_request_authors_count":21,"issue_authors_count":54,"avg_comments_per_issue":2.6933333333333334,"avg_comments_per_pull_request":1.0384615384615385,"merged_pull_requests_count":37,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":1380535.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":3.6666666666666665,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/issues","maintainers":[{"login":"daler","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/daler"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gffutils/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gffutils/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gffutils/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/gffutils/related_packages","maintainers":[{"uuid":"daler","login":"daler","name":null,"email":null,"url":null,"packages_count":10,"html_url":"https://pypi.org/user/daler/","role":null,"created_at":"2023-02-24T07:48:26.948Z","updated_at":"2023-02-24T07:48:26.948Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/daler/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726145,"maintainers_count":308800,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}},{"id":8796920,"name":"github.com/daler/gffutils","ecosystem":"go","description":null,"homepage":null,"licenses":"mit","normalized_licenses":["MIT"],"repository_url":"https://github.com/daler/gffutils","keywords_array":[],"namespace":null,"versions_count":7,"first_release_published_at":"2014-06-03T21:04:24.000Z","latest_release_published_at":"2022-10-02T21:29:16.000Z","latest_release_number":"v0.11.1","last_synced_at":"2025-08-27T20:21:45.045Z","created_at":"2024-01-24T05:35:08.971Z","updated_at":"2025-08-27T23:27:56.123Z","registry_url":"https://pkg.go.dev/github.com/daler/gffutils","install_command":"go get github.com/daler/gffutils","documentation_url":"https://pkg.go.dev/github.com/daler/gffutils#section-documentation","metadata":{},"repo_metadata":{"id":2300865,"uuid":"2562619","full_name":"daler/gffutils","owner":"daler","description":"GFF and GTF file manipulation and interconversion","archived":false,"fork":false,"pushed_at":"2024-04-13T17:41:00.000Z","size":32392,"stargazers_count":305,"open_issues_count":23,"forks_count":79,"subscribers_count":13,"default_branch":"master","last_synced_at":"2025-08-27T15:55:37.056Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://daler.github.io/gffutils","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/daler.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2011-10-12T13:48:14.000Z","updated_at":"2025-08-12T03:32:41.000Z","dependencies_parsed_at":"2023-07-05T21:32:54.492Z","dependency_job_id":"87f5fcc0-739c-4ad8-a0e2-71ce157f318e","html_url":"https://github.com/daler/gffutils","commit_stats":{"total_commits":659,"total_committers":23,"mean_commits":"28.652173913043477","dds":"0.19119878603945373","last_synced_commit":"955fb41a32022e11683a873a7bdc78444d5628cc"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/daler/gffutils","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/sbom","scorecard":{"id":317691,"data":{"date":"2025-08-11","repo":{"name":"github.com/daler/gffutils","commit":"67a4cd7edc11bb2d1ff97d8c777fb1e6006296e5"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.2,"checks":[{"name":"Code-Review","score":5,"reason":"Found 3/6 approved changesets -- score normalized to 5","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/main.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:105: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: downloadThenRun not pinned by hash: .github/workflows/main.yml:23","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:37","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:48","Info:   0 out of   2 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   1 downloadThenRun dependencies pinned","Info:   0 out of   2 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":9,"reason":"1 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-9772-cwx9-r4cj"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 29 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-18T00:36:55.739Z","repository_id":2300865,"created_at":"2025-08-18T00:36:55.739Z","updated_at":"2025-08-18T00:36:55.739Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272395955,"owners_count":24927474,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-27T02:00:09.397Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"daler","name":"Ryan Dale","uuid":"115406","kind":"user","description":"","email":"","website":null,"location":"Bethesda, MD","twitter":null,"company":"National Institutes of Health (NIH), National Institute of Child Health and Human Development (NICHD)","icon_url":"https://avatars.githubusercontent.com/u/115406?v=4","repositories_count":55,"last_synced_at":"2024-04-29T00:10:09.787Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/daler","funding_links":[],"total_stars":946,"followers":308,"following":28,"created_at":"2022-11-02T20:38:59.333Z","updated_at":"2024-04-29T00:10:11.787Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler/repositories"},"tags":[{"name":"v0.13","sha":"cce76a6c77dd9d4a12d5f1e88c3ad1389de5137e","kind":"commit","published_at":"2024-04-13T17:16:09.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.13","html_url":"https://github.com/daler/gffutils/releases/tag/v0.13","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.13","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.13","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.13/manifests"},{"name":"v0.12","sha":"955fb41a32022e11683a873a7bdc78444d5628cc","kind":"commit","published_at":"2023-07-04T21:56:35.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.12","html_url":"https://github.com/daler/gffutils/releases/tag/v0.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.12/manifests"},{"name":"v0.11.1","sha":"fdfc9fc738ae2462eb05656291ebd71baa395e24","kind":"commit","published_at":"2022-10-02T21:29:16.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.11.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.11.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.11.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11.1/manifests"},{"name":"v0.11","sha":"bbe6c3c474962f990f06cb799f8ecc97edd2ba3b","kind":"commit","published_at":"2022-06-05T16:52:29.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.11","html_url":"https://github.com/daler/gffutils/releases/tag/v0.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11/manifests"},{"name":"v0.10.1","sha":"4b5b28e610a435af359ab1c31271deea1bae4c47","kind":"tag","published_at":"2019-12-30T02:43:40.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.10.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.10.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.10.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10.1/manifests"},{"name":"v0.10","sha":"1996c82c50d4f9670a5a8423431489360c0a1370","kind":"commit","published_at":"2019-12-29T22:19:38.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.10","html_url":"https://github.com/daler/gffutils/releases/tag/v0.10","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.10","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10/manifests"},{"name":"v0.9","sha":"3af7865243dd2d3af9c50f1754daa30c02604582","kind":"tag","published_at":"2017-08-09T14:40:59.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.9","html_url":"https://github.com/daler/gffutils/releases/tag/v0.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.9/manifests"},{"name":"v0.8.7.1","sha":"aca52e13ffc53945e46cc79f4c136d942f78fd16","kind":"tag","published_at":"2016-01-15T18:53:24.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.7.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.7.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7.1/manifests"},{"name":"v0.8.7","sha":"e205bfb308e43580cfa3075d6ce5012134e47b2c","kind":"tag","published_at":"2016-01-15T17:55:21.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.7","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7/manifests"},{"name":"v0.8.6.1","sha":"d4b7d33cca7eb2d929c1a7c291b0df9546c89f12","kind":"tag","published_at":"2015-11-14T20:29:21.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.6.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6.1/manifests"},{"name":"v0.8.6","sha":"c71b37291d1aa9c9fdd98b2668466bf6f3f018e3","kind":"tag","published_at":"2015-11-14T20:17:55.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.6","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6/manifests"},{"name":"v0.8.5","sha":"1f7d9cb3b401d69aab779727c8b638b4bcc47a0e","kind":"tag","published_at":"2015-08-06T16:07:46.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.5","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.5/manifests"},{"name":"v0.8.3","sha":"a16b095cc11e6359e2dd5449fcb8006fb3fd7c8c","kind":"tag","published_at":"2015-01-28T19:10:12.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.3","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.3/manifests"},{"name":"v0.8.2","sha":"3c936e273f88c45bb0cc80669dda2c5a5e106b48","kind":"tag","published_at":"2014-06-03T21:05:11.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.2","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.2/manifests"},{"name":"v0.5","sha":"f25602c28c6f42ec1d4c3d73b1bc2b99091e9019","kind":"tag","published_at":"2013-12-04T23:15:28.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.5","html_url":"https://github.com/daler/gffutils/releases/tag/v0.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.5/manifests"}]},"repo_metadata_updated_at":"2025-08-27T23:27:56.123Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":10.203841068845398,"dependent_packages_count":9.049219470518674,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":9.626530269682036},"purl":"pkg:golang/github.com/daler/gffutils","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/daler/gffutils","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/daler/gffutils","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/daler/gffutils/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-27T08:52:35.748Z","issues_count":75,"pull_requests_count":52,"avg_time_to_close_issue":50839693.11111111,"avg_time_to_close_pull_request":12987381.104166666,"issues_closed_count":63,"pull_requests_closed_count":48,"pull_request_authors_count":21,"issue_authors_count":54,"avg_comments_per_issue":2.6933333333333334,"avg_comments_per_pull_request":1.0384615384615385,"merged_pull_requests_count":37,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":1380535.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":3.6666666666666665,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/issues","maintainers":[{"login":"daler","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/daler"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fdaler%2Fgffutils/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fdaler%2Fgffutils/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fdaler%2Fgffutils/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fdaler%2Fgffutils/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1954233,"maintainers_count":0,"namespaces_count":741771,"keywords_count":109320,"github":"golang","metadata":{"funded_packages_count":49342},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-08T05:47:38.872Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}},{"id":75395,"name":"py-gffutils","ecosystem":"spack","description":"GFF and GTF file manipulation and interconversion gffutils is a Python\npackage for working with and manipulating the GFF and GTF format files\ntypically used for genomic annotations. Files are loaded into a sqlite3\ndatabase, allowing much more complex manipulation of hierarchical\nfeatures (e.g., genes, transcripts, and exons) than is possible with\nplain-text methods alone.\n","homepage":"https://github.com/daler/gffutils","licenses":"[]","normalized_licenses":["Other"],"repository_url":"https://github.com/daler/gffutils","keywords_array":[],"namespace":null,"versions_count":1,"first_release_published_at":"2022-04-05T09:24:45.993Z","latest_release_published_at":"2022-04-05T09:24:45.993Z","latest_release_number":"0.10.1","last_synced_at":"2025-08-27T09:22:13.989Z","created_at":"2022-04-05T09:24:45.967Z","updated_at":"2025-08-27T23:27:50.232Z","registry_url":"https://packages.spack.io/package.html?name=py-gffutils","install_command":"spack install py-gffutils","documentation_url":null,"metadata":{},"repo_metadata":{"id":2300865,"uuid":"2562619","full_name":"daler/gffutils","owner":"daler","description":"GFF and GTF file manipulation and interconversion","archived":false,"fork":false,"pushed_at":"2024-04-13T17:41:00.000Z","size":32392,"stargazers_count":305,"open_issues_count":23,"forks_count":79,"subscribers_count":13,"default_branch":"master","last_synced_at":"2025-08-27T15:55:37.056Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://daler.github.io/gffutils","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/daler.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2011-10-12T13:48:14.000Z","updated_at":"2025-08-12T03:32:41.000Z","dependencies_parsed_at":"2023-07-05T21:32:54.492Z","dependency_job_id":"87f5fcc0-739c-4ad8-a0e2-71ce157f318e","html_url":"https://github.com/daler/gffutils","commit_stats":{"total_commits":659,"total_committers":23,"mean_commits":"28.652173913043477","dds":"0.19119878603945373","last_synced_commit":"955fb41a32022e11683a873a7bdc78444d5628cc"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/daler/gffutils","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/sbom","scorecard":{"id":317691,"data":{"date":"2025-08-11","repo":{"name":"github.com/daler/gffutils","commit":"67a4cd7edc11bb2d1ff97d8c777fb1e6006296e5"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.2,"checks":[{"name":"Code-Review","score":5,"reason":"Found 3/6 approved changesets -- score normalized to 5","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/main.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/main.yml:105: update your workflow using https://app.stepsecurity.io/secureworkflow/daler/gffutils/main.yml/master?enable=pin","Warn: downloadThenRun not pinned by hash: .github/workflows/main.yml:23","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:37","Warn: pipCommand not pinned by hash: .github/workflows/main.yml:48","Info:   0 out of   2 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   1 downloadThenRun dependencies pinned","Info:   0 out of   2 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":9,"reason":"1 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-9772-cwx9-r4cj"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 29 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-18T00:36:55.739Z","repository_id":2300865,"created_at":"2025-08-18T00:36:55.739Z","updated_at":"2025-08-18T00:36:55.739Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272395955,"owners_count":24927474,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-27T02:00:09.397Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"daler","name":"Ryan Dale","uuid":"115406","kind":"user","description":"","email":"","website":null,"location":"Bethesda, MD","twitter":null,"company":"National Institutes of Health (NIH), National Institute of Child Health and Human Development (NICHD)","icon_url":"https://avatars.githubusercontent.com/u/115406?v=4","repositories_count":55,"last_synced_at":"2024-04-29T00:10:09.787Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/daler","funding_links":[],"total_stars":946,"followers":308,"following":28,"created_at":"2022-11-02T20:38:59.333Z","updated_at":"2024-04-29T00:10:11.787Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daler/repositories"},"tags":[{"name":"v0.13","sha":"cce76a6c77dd9d4a12d5f1e88c3ad1389de5137e","kind":"commit","published_at":"2024-04-13T17:16:09.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.13","html_url":"https://github.com/daler/gffutils/releases/tag/v0.13","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.13","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.13","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.13/manifests"},{"name":"v0.12","sha":"955fb41a32022e11683a873a7bdc78444d5628cc","kind":"commit","published_at":"2023-07-04T21:56:35.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.12","html_url":"https://github.com/daler/gffutils/releases/tag/v0.12","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.12","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.12","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.12/manifests"},{"name":"v0.11.1","sha":"fdfc9fc738ae2462eb05656291ebd71baa395e24","kind":"commit","published_at":"2022-10-02T21:29:16.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.11.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.11.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.11.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11.1/manifests"},{"name":"v0.11","sha":"bbe6c3c474962f990f06cb799f8ecc97edd2ba3b","kind":"commit","published_at":"2022-06-05T16:52:29.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.11","html_url":"https://github.com/daler/gffutils/releases/tag/v0.11","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.11","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.11/manifests"},{"name":"v0.10.1","sha":"4b5b28e610a435af359ab1c31271deea1bae4c47","kind":"tag","published_at":"2019-12-30T02:43:40.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.10.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.10.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.10.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10.1/manifests"},{"name":"v0.10","sha":"1996c82c50d4f9670a5a8423431489360c0a1370","kind":"commit","published_at":"2019-12-29T22:19:38.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.10","html_url":"https://github.com/daler/gffutils/releases/tag/v0.10","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.10","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.10/manifests"},{"name":"v0.9","sha":"3af7865243dd2d3af9c50f1754daa30c02604582","kind":"tag","published_at":"2017-08-09T14:40:59.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.9","html_url":"https://github.com/daler/gffutils/releases/tag/v0.9","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.9","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.9/manifests"},{"name":"v0.8.7.1","sha":"aca52e13ffc53945e46cc79f4c136d942f78fd16","kind":"tag","published_at":"2016-01-15T18:53:24.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.7.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.7.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.7.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7.1/manifests"},{"name":"v0.8.7","sha":"e205bfb308e43580cfa3075d6ce5012134e47b2c","kind":"tag","published_at":"2016-01-15T17:55:21.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.7","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.7/manifests"},{"name":"v0.8.6.1","sha":"d4b7d33cca7eb2d929c1a7c291b0df9546c89f12","kind":"tag","published_at":"2015-11-14T20:29:21.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.6.1","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6.1/manifests"},{"name":"v0.8.6","sha":"c71b37291d1aa9c9fdd98b2668466bf6f3f018e3","kind":"tag","published_at":"2015-11-14T20:17:55.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.6","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.6/manifests"},{"name":"v0.8.5","sha":"1f7d9cb3b401d69aab779727c8b638b4bcc47a0e","kind":"tag","published_at":"2015-08-06T16:07:46.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.5","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.5/manifests"},{"name":"v0.8.3","sha":"a16b095cc11e6359e2dd5449fcb8006fb3fd7c8c","kind":"tag","published_at":"2015-01-28T19:10:12.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.3","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.3/manifests"},{"name":"v0.8.2","sha":"3c936e273f88c45bb0cc80669dda2c5a5e106b48","kind":"tag","published_at":"2014-06-03T21:05:11.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.8.2","html_url":"https://github.com/daler/gffutils/releases/tag/v0.8.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.8.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.8.2/manifests"},{"name":"v0.5","sha":"f25602c28c6f42ec1d4c3d73b1bc2b99091e9019","kind":"tag","published_at":"2013-12-04T23:15:28.000Z","download_url":"https://codeload.github.com/daler/gffutils/tar.gz/v0.5","html_url":"https://github.com/daler/gffutils/releases/tag/v0.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/daler/gffutils@v0.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/tags/v0.5/manifests"}]},"repo_metadata_updated_at":"2025-08-27T23:27:50.232Z","dependent_packages_count":2,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":0.0,"dependent_packages_count":18.980130609976378,"stargazers_count":13.964151729887453,"forks_count":12.783104071140752,"average":11.431846602751145},"purl":"pkg:spack/py-gffutils","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/spack/py-gffutils","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/spack/py-gffutils","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/spack/py-gffutils/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-27T08:52:35.748Z","issues_count":75,"pull_requests_count":52,"avg_time_to_close_issue":50839693.11111111,"avg_time_to_close_pull_request":12987381.104166666,"issues_closed_count":63,"pull_requests_closed_count":48,"pull_request_authors_count":21,"issue_authors_count":54,"avg_comments_per_issue":2.6933333333333334,"avg_comments_per_pull_request":1.0384615384615385,"merged_pull_requests_count":37,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":1380535.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":3.6666666666666665,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/issues","maintainers":[{"login":"daler","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/daler"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-gffutils/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-gffutils/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-gffutils/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages/py-gffutils/related_packages","maintainers":[{"uuid":"dorton21","login":"dorton21","name":null,"email":null,"url":"https://github.com/dorton21","packages_count":48,"html_url":null,"role":null,"created_at":"2022-11-14T16:51:28.183Z","updated_at":"2022-11-14T16:51:28.183Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/maintainers/dorton21/packages"}],"registry":{"name":"spack.io","url":"https://packages.spack.io","ecosystem":"spack","default":true,"packages_count":8772,"maintainers_count":926,"namespaces_count":0,"keywords_count":3681,"github":"spack","metadata":{"funded_packages_count":405},"icon_url":"https://github.com/spack.png","created_at":"2022-04-04T15:19:23.514Z","updated_at":"2025-09-08T06:56:36.288Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/spack.io/namespaces"}}],"commits":{"id":286350,"full_name":"daler/gffutils","default_branch":"master","committers":[{"name":"daler","email":"dalerr@niddk.nih.gov","login":"daler","count":590},{"name":"Yarden Katz","email":"yarden.katz@gmail.com","login":"yarden","count":30},{"name":"Andrew Lando","email":"dronte.l@gmail.com","login":"Dronte","count":14},{"name":"Jacques Dainat","email":"jacques.dainat@ird.fr","login":"Juke34","count":8},{"name":"Nolan Woods","email":"innovate.invent@gmail.com","login":"innovate-invent","count":6},{"name":"Gabriel Pratt","email":"gpratt@ucsd.edu","login":null,"count":3},{"name":"Rintze M. Zelle","email":"rintze.zelle@gmail.com","login":"rmzelle","count":3},{"name":"Abishek.k","email":"jesuisabhishek@gmail.com","login":"abhishekkumaresan","count":3},{"name":"Rory Kirchner","email":"rory.kirchner@gmail.com","login":"roryk","count":2},{"name":"Vladimir Mladenovic","email":"vladimir.mladenovic@sbgenomics.com","login":null,"count":1},{"name":"Edward S. Rice","email":"edward.rice@missouri.edu","login":"esrice","count":1},{"name":"Husen M. Umer","email":"husensofteng","login":"husensofteng","count":1},{"name":"Matt Shirley","email":"mdshw5@gmail.com","login":"mdshw5","count":1},{"name":"Michael R. Crusoe","email":"crusoe@debian.org","login":"mr-c","count":1},{"name":"Rob Beagrie","email":"rob@beagrie.com","login":"rbeagrie","count":1},{"name":"Stefano Rivera","email":"github@rivera.za.net","login":"stefanor","count":1},{"name":"Steven Brown","email":"sdbrown@gmail.com","login":"stevendbrown","count":1},{"name":"Trent Hauck","email":"trent@trenthauck.com","login":"tshauck","count":1},{"name":"Viktor Kerkez","email":"alefnula@gmail.com","login":"alefnula","count":1},{"name":"lowdanie","email":"lowdanie@gmail.com","login":"lowdanie","count":1},{"name":"moritzbuck","email":"mrtz.buck@gmail.com","login":"moritzbuck","count":1},{"name":"njohnso6","email":"njohnso6@uccs.edu","login":"njohnso6","count":1}],"total_commits":672,"total_committers":22,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":30.545454545454547,"dds":0.12202380952380953,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-05-18T01:02:23.557Z","last_synced_commit":"67a4cd7edc11bb2d1ff97d8c777fb1e6006296e5","created_at":"2023-03-08T15:46:43.625Z","updated_at":"2025-05-18T01:02:23.596Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"daler/gffutils","html_url":"https://github.com/daler/gffutils","last_synced_at":"2025-08-27T08:52:35.748Z","status":"error","issues_count":75,"pull_requests_count":52,"avg_time_to_close_issue":50839693.11111111,"avg_time_to_close_pull_request":12987381.104166666,"issues_closed_count":63,"pull_requests_closed_count":48,"pull_request_authors_count":21,"issue_authors_count":54,"avg_comments_per_issue":2.6933333333333334,"avg_comments_per_pull_request":1.0384615384615385,"merged_pull_requests_count":37,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":1380535.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":3.6666666666666665,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-10T14:51:45.229Z","updated_at":"2025-09-03T04:00:35.787Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daler%2Fgffutils/issues","issue_labels_count":{"v0.11":10,"feature request":7,"needs-discussion":3,"design":2},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":62,"CONTRIBUTOR":9,"OWNER":4},"pull_request_author_associations_count":{"OWNER":25,"CONTRIBUTOR":18,"NONE":14},"issue_authors":{"innovate-invent":5,"daler":4,"dariober":4,"mictadlo":3,"yurivict":3,"yarden":3,"scimerc":2,"novigit":2,"YeHW":2,"z626093820":2,"olgabot":2,"p-polacek":1,"msarrias":1,"soungalo":1,"bbimber":1,"alexpenson":1,"zhqu1148980644":1,"kbseah":1,"mmattocks":1,"ieguinoa":1,"Jome0169":1,"mr-c":1,"igwill":1,"lldelisle":1,"Lservi":1,"andrewkennard":1,"haiyueliu":1,"elhossary":1,"mglubber":1,"almart7":1,"chenzemin":1,"arnikz":1,"dtdoering":1,"lpantano":1,"deannachurch":1,"photocyte":1,"Xiaofei-git":1,"heidi-holappa":1,"naumenko-sa":1,"jekang39":1,"bschilder":1,"Yu-jinKim":1,"littleblackfish":1,"sschmeier":1,"EFraim":1,"lee-van":1,"kathryncrouch":1,"FabianJetzinger":1,"ewallace":1,"andrewprzh":1,"zwpwjwtz":1,"mbiokyle29":1,"ThuyTien1":1,"dgruano":1},"pull_request_authors":{"daler":25,"mr-c":4,"innovate-invent":4,"Juke34":3,"a-detiste":2,"stevendbrown":2,"AMDmi3":2,"aliciaaevans":2,"EFraim":1,"roryk":1,"smoe":1,"lowdanie":1,"stefanor":1,"DevangThakkar":1,"pbradz":1,"arnikz":1,"esrice":1,"stekaz":1,"husensofteng":1,"aswarren":1,"abhishekkumaresan":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10070501,"issues_count":31240645,"pull_requests_count":95394471,"authors_count":10689216,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":4},"past_year_pull_request_author_associations_count":{"NONE":2},"past_year_issue_authors":{"bschilder":1,"dgruano":1,"FabianJetzinger":1,"kbseah":1},"past_year_pull_request_authors":{"aliciaaevans":2},"maintainers":[{"login":"daler","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/daler"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":4,"WatchEvent":16,"IssueCommentEvent":12,"PullRequestEvent":1,"ForkEvent":1},"last_year":{"IssuesEvent":4,"WatchEvent":16,"IssueCommentEvent":12,"PullRequestEvent":1,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"docs-requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-07T18:00:23.074Z","updated_at":"2022-08-07T18:00:23.074Z","repository_link":"https://github.com/daler/gffutils/blob/master/docs-requirements.txt","dependencies":[{"id":605341833,"package_name":"make","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":605341834,"package_name":"numpydoc","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":605341835,"package_name":"sphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":605341836,"package_name":"sphinx_rtd_theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":605341837,"package_name":"sphinx-autoapi","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"optional-requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-07T18:00:23.105Z","updated_at":"2022-08-07T18:00:23.105Z","repository_link":"https://github.com/daler/gffutils/blob/master/optional-requirements.txt","dependencies":[{"id":605341838,"package_name":"biopython","ecosystem":"pypi","requirements":"\u003e=1.73","direct":true,"kind":"runtime","optional":false},{"id":605341839,"package_name":"bedtools","ecosystem":"pypi","requirements":"\u003e=2.27.1","direct":true,"kind":"runtime","optional":false},{"id":605341840,"package_name":"pybedtools","ecosystem":"pypi","requirements":"\u003e=0.8.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-07T18:00:23.139Z","updated_at":"2022-08-07T18:00:23.139Z","repository_link":"https://github.com/daler/gffutils/blob/master/requirements.txt","dependencies":[{"id":605341841,"package_name":"pyfaidx","ecosystem":"pypi","requirements":"\u003e=0.5.5.2","direct":true,"kind":"runtime","optional":false},{"id":605341842,"package_name":"six","ecosystem":"pypi","requirements":"\u003e=1.12.0","direct":true,"kind":"runtime","optional":false},{"id":605341843,"package_name":"argh","ecosystem":"pypi","requirements":"\u003e=0.26.2","direct":true,"kind":"runtime","optional":false},{"id":605341844,"package_name":"argcomplete","ecosystem":"pypi","requirements":"\u003e=1.9.4","direct":true,"kind":"runtime","optional":false},{"id":605341845,"package_name":"simplejson","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/main.yml","sha":null,"kind":"manifest","created_at":"2023-01-13T12:15:18.122Z","updated_at":"2023-01-13T12:15:18.122Z","repository_link":"https://github.com/daler/gffutils/blob/master/.github/workflows/main.yml","dependencies":[{"id":6875779534,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6875779535,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":18.696578978904494,"created_at":"2025-09-08T11:18:37.443Z","updated_at":"2025-10-07T08:24:56.836Z","avatar_url":"https://github.com/daler.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":17079,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["bioinformatics","ngs","usegalaxy","workflow-engine","phylogenetics","sequence-alignment","nextflow","bioconda","multiqc","pypi"],"project_url":"https://science.ecosyste.ms/api/v1/projects/65321","html_url":"https://science.ecosyste.ms/projects/65321"}