{"id":6533,"name":"ngs_flows","description":null,"url":"https://github.com/pawelqs/ngs_flows","last_synced_at":"2025-09-04T19:09:29.183Z","repository":{"id":211939199,"uuid":"730174359","full_name":"pawelqs/ngs_flows","owner":"pawelqs","description":null,"archived":false,"fork":false,"pushed_at":"2024-11-27T23:05:44.000Z","size":2268,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2024-11-28T00:19:06.832Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pawelqs.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-12-11T11:09:27.000Z","updated_at":"2024-11-27T23:05:49.000Z","dependencies_parsed_at":"2024-11-28T00:19:01.569Z","dependency_job_id":"8680e5b1-2ee8-4556-9afe-b8afc7fbba74","html_url":"https://github.com/pawelqs/ngs_flows","commit_stats":null,"previous_names":["pawelqs/ngs_flows"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/pawelqs/ngs_flows","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pawelqs%2Fngs_flows","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pawelqs%2Fngs_flows/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pawelqs%2Fngs_flows/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pawelqs%2Fngs_flows/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pawelqs","download_url":"https://codeload.github.com/pawelqs/ngs_flows/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pawelqs%2Fngs_flows/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273657459,"owners_count":25145086,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"pawelqs","name":"Paweł","uuid":"38688203","kind":"user","description":"Bioinformatician, PhD Candidate at Silesian University of Technology.","email":"","website":"pawelqs.github.io","location":"Warszawa","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/38688203?v=4","repositories_count":3,"last_synced_at":"2023-03-08T09:38:08.346Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/pawelqs","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-18T02:18:37.897Z","updated_at":"2023-03-08T09:38:08.359Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pawelqs","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pawelqs/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"pawelqs/ngs_flows","html_url":"https://github.com/pawelqs/ngs_flows","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-02T23:21:18.239Z","updated_at":"2025-09-02T23:21:18.239Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pawelqs%2Fngs_flows","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pawelqs%2Fngs_flows/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"OWNER":1},"issue_authors":{},"pull_request_authors":{"pawelqs":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10081382,"issues_count":31322741,"pull_requests_count":96214245,"authors_count":10693626,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"OWNER":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"pawelqs":1},"maintainers":[{"login":"pawelqs","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pawelqs"}],"active_maintainers":[{"login":"pawelqs","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pawelqs"}]},"events":{"total":{"PushEvent":2,"PullRequestEvent":2},"last_year":{"PushEvent":2,"PullRequestEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.939Z","updated_at":"2023-12-11T18:39:16.939Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/awsfulltest.yml","dependencies":[{"id":15032517357,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15032517358,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.947Z","updated_at":"2023-12-11T18:39:16.947Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/awstest.yml","dependencies":[{"id":15032517359,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15032517360,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.955Z","updated_at":"2023-12-11T18:39:16.955Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/branch.yml","dependencies":[{"id":15032517361,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.963Z","updated_at":"2023-12-11T18:39:16.963Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/ci.yml","dependencies":[{"id":15032517362,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15032517363,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.972Z","updated_at":"2023-12-11T18:39:16.972Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":15032517364,"package_name":"actions/stale","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.978Z","updated_at":"2023-12-11T18:39:16.978Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":15032517365,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15032517366,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.984Z","updated_at":"2023-12-11T18:39:16.984Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/linting.yml","dependencies":[{"id":15032517367,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15032517368,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15032517369,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":15032517370,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":15032517371,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":15032517372,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":15032517373,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcments.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:16.997Z","updated_at":"2023-12-11T18:39:16.997Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/.github/workflows/release-announcments.yml","dependencies":[{"id":15032517376,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":15032517377,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":15032517378,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:17.004Z","updated_at":"2023-12-11T18:39:17.004Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:17.008Z","updated_at":"2023-12-11T18:39:17.008Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:17.012Z","updated_at":"2023-12-11T18:39:17.012Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-12-11T18:39:17.015Z","updated_at":"2023-12-11T18:39:17.015Z","repository_link":"https://github.com/pawelqs/ngs_flows/blob/master/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:50:20.300Z","updated_at":"2025-10-07T08:05:42.521Z","avatar_url":"https://github.com/pawelqs.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/6533","html_url":"https://science.ecosyste.ms/projects/6533","bibtex_url":"https://science.ecosyste.ms/projects/6533/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/6533/export.apalike"}