{"id":65358,"name":"rhierbaps","description":"rhierbaps: R implementation of hierBAPS","url":"https://github.com/gtonkinhill/rhierbaps","last_synced_at":"2025-09-08T13:23:43.602Z","repository":{"id":54344543,"uuid":"111926448","full_name":"gtonkinhill/rhierbaps","owner":"gtonkinhill","description":"rhierbaps: R implementation of hierBAPS","archived":false,"fork":false,"pushed_at":"2021-05-02T06:15:41.000Z","size":1707,"stargazers_count":35,"open_issues_count":1,"forks_count":3,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-08-18T17:52:05.213Z","etag":null,"topics":["population-genetics","population-genomics","population-structure","r"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/gtonkinhill.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-11-24T14:22:47.000Z","updated_at":"2025-06-08T14:31:14.000Z","dependencies_parsed_at":"2022-08-13T12:40:42.422Z","dependency_job_id":null,"html_url":"https://github.com/gtonkinhill/rhierbaps","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/gtonkinhill/rhierbaps","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gtonkinhill","download_url":"https://codeload.github.com/gtonkinhill/rhierbaps/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274191017,"owners_count":25238279,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"gtonkinhill","name":"Gerry Tonkin-Hill","uuid":"10625107","kind":"user","description":"Postdoctoral Fellow at the University of Oslo | previously at the Sanger Institute | pathogen genomics, statistics, machine learning","email":"","website":"https://gtonkinhill.github.io","location":"Australia","twitter":"gerrythill","company":null,"icon_url":"https://avatars.githubusercontent.com/u/10625107?u=bcfa64a282ada1067f99dc79e24b92396f0db7d2\u0026v=4","repositories_count":14,"last_synced_at":"2023-03-05T21:13:10.939Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/gtonkinhill","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T22:58:45.390Z","updated_at":"2023-03-05T21:13:10.951Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gtonkinhill","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gtonkinhill/repositories"},"packages":[{"id":436806,"name":"rhierbaps","ecosystem":"cran","description":"Clustering Genetic Sequence Data Using the HierBAPS Algorithm","homepage":"https://github.com/gtonkinhill/rhierbaps","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/gtonkinhill/rhierbaps","keywords_array":[],"namespace":null,"versions_count":5,"first_release_published_at":"2018-07-20T20:00:00.000Z","latest_release_published_at":"2022-11-18T00:00:00.000Z","latest_release_number":"1.1.4","last_synced_at":"2025-08-18T17:34:27.267Z","created_at":"2022-04-06T23:32:30.348Z","updated_at":"2025-08-18T17:41:40.026Z","registry_url":"https://cran.r-project.org/package=rhierbaps","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/rhierbaps/rhierbaps.pdf","metadata":{},"repo_metadata":{"id":54344543,"uuid":"111926448","full_name":"gtonkinhill/rhierbaps","owner":"gtonkinhill","description":"rhierbaps: R implementation of hierBAPS","archived":false,"fork":false,"pushed_at":"2021-05-02T06:15:41.000Z","size":1707,"stargazers_count":35,"open_issues_count":1,"forks_count":3,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-07-18T01:15:23.288Z","etag":null,"topics":["population-genetics","population-genomics","population-structure","r"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/gtonkinhill.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-11-24T14:22:47.000Z","updated_at":"2025-06-08T14:31:14.000Z","dependencies_parsed_at":"2022-08-13T12:40:42.422Z","dependency_job_id":null,"html_url":"https://github.com/gtonkinhill/rhierbaps","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/gtonkinhill/rhierbaps","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gtonkinhill","download_url":"https://codeload.github.com/gtonkinhill/rhierbaps/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271033409,"owners_count":24688254,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-18T02:00:08.743Z","response_time":89,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"gtonkinhill","name":"Gerry Tonkin-Hill","uuid":"10625107","kind":"user","description":"Postdoctoral Fellow at the University of Oslo | previously at the Sanger Institute | pathogen genomics, statistics, machine learning","email":"","website":"https://gtonkinhill.github.io","location":"Australia","twitter":"gerrythill","company":null,"icon_url":"https://avatars.githubusercontent.com/u/10625107?u=bcfa64a282ada1067f99dc79e24b92396f0db7d2\u0026v=4","repositories_count":14,"last_synced_at":"2023-03-05T21:13:10.939Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/gtonkinhill","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T22:58:45.390Z","updated_at":"2023-03-05T21:13:10.951Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gtonkinhill","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gtonkinhill/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-18T17:41:40.025Z","dependent_packages_count":1,"downloads":323,"downloads_period":"last-month","dependent_repos_count":2,"rankings":{"downloads":37.600178094390024,"dependent_repos_count":19.265360641139804,"dependent_packages_count":18.14781834372217,"stargazers_count":9.54140694568121,"forks_count":14.210643509240702,"docker_downloads_count":null,"average":19.753081506834782},"purl":"pkg:cran/rhierbaps","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/rhierbaps","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/rhierbaps","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/rhierbaps/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/rhierbaps/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/rhierbaps/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/rhierbaps/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/rhierbaps/related_packages","maintainers":[{"uuid":"g.tonkinhill@gmail.com","login":null,"name":"Gerry Tonkin-Hill","email":"g.tonkinhill@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2022-11-14T17:23:30.458Z","updated_at":"2022-11-14T17:23:30.458Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/g.tonkinhill@gmail.com/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26181,"maintainers_count":14299,"namespaces_count":0,"keywords_count":8326,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-08T06:54:01.855Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"id":724582,"full_name":"gtonkinhill/rhierbaps","default_branch":"master","committers":[{"name":"Gerry Tonkin-Hill","email":"gqt20@cam.ac.uk","login":null,"count":42}],"total_commits":42,"total_committers":1,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":42.0,"dds":0.0,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T13:47:59.410Z","last_synced_commit":"8480ef5d27c4e32bb137132286e53df738075ce1","created_at":"2023-03-09T13:11:52.840Z","updated_at":"2023-10-25T13:47:59.411Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5483322,"commits_count":854270774,"contributors_count":31138750,"owners_count":908526,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"gtonkinhill/rhierbaps","html_url":"https://github.com/gtonkinhill/rhierbaps","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T23:56:44.091Z","updated_at":"2025-08-31T23:56:44.091Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/gtonkinhill%2Frhierbaps/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"Viloleal":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10166699,"issues_count":32013288,"pull_requests_count":100268859,"authors_count":10729412,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["population-genetics","population-genomics","population-structure","r"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-13T12:40:42.278Z","updated_at":"2022-08-13T12:40:42.278Z","repository_link":"https://github.com/gtonkinhill/rhierbaps/blob/master/DESCRIPTION","dependencies":[{"id":1439945399,"package_name":"ape","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1439945400,"package_name":"purrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1439945401,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1439945402,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1439945403,"package_name":"matrixStats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1439945404,"package_name":"patchwork","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":1439945405,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1439945406,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1439945407,"package_name":"markdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1439945408,"package_name":"ggtree","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1439945409,"package_name":"phytools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1439945410,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1439945411,"package_name":"formatR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":9.373479109353363,"created_at":"2025-09-08T11:18:37.589Z","updated_at":"2025-10-07T08:24:57.325Z","avatar_url":"https://github.com/gtonkinhill.png","language":"R","category":null,"sub_category":null,"monthly_downloads":323,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/65358","html_url":"https://science.ecosyste.ms/projects/65358"}